Wall clock time and date at job start Thu Apr 9 2020 11:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47596 * 2 1 4 4 C 1.36932 * 120.00175 * 84.60140 * 3 2 1 5 5 H 1.07996 * 120.00534 * 169.34790 * 4 3 2 6 6 C 1.38810 * 119.99899 * 349.35038 * 4 3 2 7 7 N 1.31619 * 120.00189 * 0.49334 * 6 4 3 8 8 Si 1.86802 * 120.00119 * 180.49423 * 6 4 3 9 9 H 1.48495 * 109.47335 * 90.00158 * 8 6 4 10 10 H 1.48506 * 109.46969 * 209.99851 * 8 6 4 11 11 H 1.48501 * 109.47205 * 329.99689 * 8 6 4 12 12 C 1.46506 * 120.00104 * 264.60594 * 3 2 1 13 13 C 1.50697 * 109.46957 * 267.16870 * 12 3 2 14 14 C 1.35317 * 126.12671 * 92.96899 * 13 12 3 15 15 C 1.39870 * 107.92003 * 179.90090 * 14 13 12 16 16 N 1.30833 * 108.20218 * 0.37126 * 15 14 13 17 17 N 1.34949 * 126.12813 * 273.28296 * 13 12 3 18 18 C 1.46506 * 126.03548 * 359.94252 * 17 13 12 19 19 H 1.09002 * 109.47107 * 187.72965 * 1 2 3 20 20 H 1.08997 * 109.46679 * 307.73646 * 1 2 3 21 21 H 1.09003 * 109.46924 * 67.73070 * 1 2 3 22 22 H 1.09005 * 109.46711 * 239.99829 * 2 1 3 23 23 H 1.08999 * 109.46740 * 120.00671 * 2 1 3 24 24 H 0.96999 * 120.00741 * 180.02562 * 7 6 4 25 25 H 1.08996 * 109.46901 * 27.16725 * 12 3 2 26 26 H 1.08994 * 109.47092 * 147.16694 * 12 3 2 27 27 H 1.08007 * 126.03924 * 0.04290 * 14 13 12 28 28 H 1.08000 * 125.89953 * 180.14500 * 15 14 13 29 29 H 1.08995 * 109.46960 * 94.57426 * 18 17 13 30 30 H 1.08994 * 109.47080 * 214.57449 * 18 17 13 31 31 H 1.09003 * 109.46763 * 334.57110 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.1416 2.0638 1.1806 5 1 2.6585 3.0117 1.2049 6 6 1.6019 1.5375 2.3462 7 7 0.9804 0.3777 2.3185 8 14 1.7578 2.4754 3.9542 9 1 0.5899 3.3782 4.1159 10 1 1.8009 1.5144 5.0855 11 1 3.0065 3.2790 3.9395 12 6 2.3752 2.0320 -1.2631 13 6 3.8466 1.8425 -1.5279 14 6 4.4047 0.8463 -2.2539 15 6 5.7901 1.0387 -2.2549 16 7 6.0548 2.1073 -1.5481 17 7 4.8440 2.6325 -1.0784 18 6 4.6881 3.8285 -0.2467 19 1 -0.3633 -1.0183 0.1382 20 1 -0.3632 0.6290 0.8127 21 1 -0.3633 0.3895 -0.9510 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 0.6029 0.0100 3.1329 25 1 1.7997 1.5883 -2.0756 26 1 2.1517 3.0968 -1.1989 27 1 3.8740 0.0455 -2.7475 28 1 6.5163 0.4112 -2.7503 29 1 4.8073 3.5592 0.8027 30 1 5.4447 4.5633 -0.5215 31 1 3.6962 4.2526 -0.4027 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379398215.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:16 Heat of formation + Delta-G solvation = 112.028558 kcal Electronic energy + Delta-G solvation = -14188.079601 eV Core-core repulsion = 11893.821644 eV Total energy + Delta-G solvation = -2294.257957 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.49747 -36.08090 -32.70940 -31.77410 -30.01281 -28.69992 -26.20329 -25.45192 -23.21882 -20.68438 -20.34192 -19.05443 -16.68474 -16.00465 -15.37745 -14.54987 -13.90172 -13.65128 -13.49575 -13.08586 -12.35566 -12.14758 -11.94946 -11.85577 -11.62544 -11.22903 -10.91415 -10.63269 -10.47125 -10.10243 -9.91697 -9.65332 -9.57439 -8.63525 -8.38982 -7.85613 -6.91794 -5.67403 -3.19873 2.56523 3.18151 3.33016 3.37717 3.40410 3.47557 4.43521 5.12557 5.30424 5.50744 5.60375 5.67080 5.69610 5.89212 5.97404 6.29988 6.38238 6.44585 6.65085 6.87804 7.03864 7.13716 7.28273 7.28509 7.56576 7.70236 7.90963 8.17401 8.35467 8.41067 9.21943 9.79736 10.22942 11.24420 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031560 B = 0.012123 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.998493 B = 2309.082285 C = 2903.921857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.169 3.831 3 N -0.590 5.590 4 C -0.247 4.247 5 H 0.072 0.928 6 C -0.005 4.005 7 N -0.903 5.903 8 Si 0.908 3.092 9 H -0.288 1.288 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.202 3.798 13 C 0.097 3.903 14 C -0.290 4.290 15 C 0.038 3.962 16 N -0.323 5.323 17 N -0.363 5.363 18 C 0.107 3.893 19 H 0.021 0.979 20 H 0.085 0.915 21 H -0.002 1.002 22 H 0.000 1.000 23 H 0.098 0.902 24 H 0.250 0.750 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.136 0.864 28 H 0.172 0.828 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 2.801 -6.110 7.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 N -0.311 5.311 4 C -0.376 4.376 5 H 0.090 0.910 6 C -0.201 4.201 7 N -0.551 5.551 8 Si 0.739 3.261 9 H -0.215 1.215 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.072 3.928 13 C -0.035 4.035 14 C -0.320 4.320 15 C -0.147 4.147 16 N -0.145 5.145 17 N -0.145 5.145 18 C -0.034 4.034 19 H 0.040 0.960 20 H 0.104 0.896 21 H 0.017 0.983 22 H 0.019 0.981 23 H 0.115 0.885 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.154 0.846 28 H 0.189 0.811 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.809 3.611 -5.388 7.522 hybrid contribution -0.498 -0.212 0.645 0.842 sum 3.311 3.399 -4.744 6.709 Atomic orbital electron populations 1.22349 0.98938 0.99275 0.98571 1.20989 0.92547 0.83681 0.98295 1.44196 1.74505 1.11785 1.00603 1.19316 1.29775 1.02696 0.85766 0.90991 1.24851 0.99536 0.97577 0.98178 1.70250 1.40994 1.17882 1.25976 0.86192 0.77639 0.78803 0.83496 1.21497 1.21654 1.20812 1.19439 0.85289 0.97663 0.90445 1.22948 0.94798 0.91802 0.93911 1.21116 0.93794 1.04314 1.12815 1.23618 0.96209 0.95944 0.98934 1.77157 1.05235 1.14024 1.18097 1.48339 1.03702 1.22342 1.40146 1.21778 1.02813 0.84167 0.94671 0.96003 0.89623 0.98282 0.98128 0.88459 0.93896 0.91283 0.92754 0.84577 0.81062 0.90605 0.90745 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.28 37.16 0.34 -2.72 16 2 C 0.17 4.08 5.68 -4.04 -0.02 4.06 16 3 N -0.59 -14.11 2.53 -174.62 -0.44 -14.55 16 4 C -0.25 -6.31 9.78 -15.06 -0.15 -6.46 16 5 H 0.07 1.75 6.22 -52.49 -0.33 1.42 16 6 C -0.01 -0.14 5.24 -17.43 -0.09 -0.23 16 7 N -0.90 -24.56 7.29 55.49 0.40 -24.16 16 8 Si 0.91 21.11 29.55 -169.99 -5.02 16.08 16 9 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.20 4.04 5.82 -5.19 -0.03 4.01 16 13 C 0.10 1.94 6.50 -82.26 -0.53 1.40 16 14 C -0.29 -5.43 10.72 -40.01 -0.43 -5.86 16 15 C 0.04 0.68 12.03 -17.37 -0.21 0.47 16 16 N -0.32 -6.39 12.58 30.62 0.39 -6.01 16 17 N -0.36 -7.12 4.01 -63.88 -0.26 -7.38 16 18 C 0.11 1.76 10.34 59.85 0.62 2.38 16 19 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 20 H 0.09 2.23 6.11 -51.93 -0.32 1.92 16 21 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 22 H 0.00 0.01 8.03 -51.93 -0.42 -0.41 16 23 H 0.10 2.66 5.96 -51.93 -0.31 2.35 16 24 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 25 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 26 H 0.05 1.03 7.04 -51.93 -0.37 0.66 16 27 H 0.14 2.30 8.06 -52.48 -0.42 1.88 16 28 H 0.17 2.36 8.06 -52.49 -0.42 1.94 16 29 H 0.08 1.32 7.84 -51.93 -0.41 0.91 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.32 6.76 -51.93 -0.35 0.97 16 LS Contribution 257.53 15.07 3.88 3.88 Total: -1.00 -29.17 257.53 -5.71 -34.88 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.16 Total: 0.20 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -0.50 Total: -2.95 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.09 Total: -52.10 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.17 -5.71 -34.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379398215.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.908 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds