Wall clock time and date at job start Thu Apr 9 2020 11:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47596 * 2 1 4 4 C 1.36932 * 120.00175 * 84.60140 * 3 2 1 5 5 H 1.07996 * 120.00534 * 169.34790 * 4 3 2 6 6 C 1.38810 * 119.99899 * 349.35038 * 4 3 2 7 7 N 1.31619 * 120.00189 * 0.49334 * 6 4 3 8 8 Si 1.86802 * 120.00119 * 180.49423 * 6 4 3 9 9 H 1.48495 * 109.47335 * 90.00158 * 8 6 4 10 10 H 1.48506 * 109.46969 * 209.99851 * 8 6 4 11 11 H 1.48501 * 109.47205 * 329.99689 * 8 6 4 12 12 C 1.46506 * 120.00104 * 264.60594 * 3 2 1 13 13 C 1.50697 * 109.46957 * 267.16870 * 12 3 2 14 14 C 1.35317 * 126.12671 * 92.96899 * 13 12 3 15 15 C 1.39870 * 107.92003 * 179.90090 * 14 13 12 16 16 N 1.30833 * 108.20218 * 0.37126 * 15 14 13 17 17 N 1.34949 * 126.12813 * 273.28296 * 13 12 3 18 18 C 1.46506 * 126.03548 * 359.94252 * 17 13 12 19 19 H 1.09002 * 109.47107 * 187.72965 * 1 2 3 20 20 H 1.08997 * 109.46679 * 307.73646 * 1 2 3 21 21 H 1.09003 * 109.46924 * 67.73070 * 1 2 3 22 22 H 1.09005 * 109.46711 * 239.99829 * 2 1 3 23 23 H 1.08999 * 109.46740 * 120.00671 * 2 1 3 24 24 H 0.96999 * 120.00741 * 180.02562 * 7 6 4 25 25 H 1.08996 * 109.46901 * 27.16725 * 12 3 2 26 26 H 1.08994 * 109.47092 * 147.16694 * 12 3 2 27 27 H 1.08007 * 126.03924 * 0.04290 * 14 13 12 28 28 H 1.08000 * 125.89953 * 180.14500 * 15 14 13 29 29 H 1.08995 * 109.46960 * 94.57426 * 18 17 13 30 30 H 1.08994 * 109.47080 * 214.57449 * 18 17 13 31 31 H 1.09003 * 109.46763 * 334.57110 * 18 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.1416 2.0638 1.1806 5 1 2.6585 3.0117 1.2049 6 6 1.6019 1.5375 2.3462 7 7 0.9804 0.3777 2.3185 8 14 1.7578 2.4754 3.9542 9 1 0.5899 3.3782 4.1159 10 1 1.8009 1.5144 5.0855 11 1 3.0065 3.2790 3.9395 12 6 2.3752 2.0320 -1.2631 13 6 3.8466 1.8425 -1.5279 14 6 4.4047 0.8463 -2.2539 15 6 5.7901 1.0387 -2.2549 16 7 6.0548 2.1073 -1.5481 17 7 4.8440 2.6325 -1.0784 18 6 4.6881 3.8285 -0.2467 19 1 -0.3633 -1.0183 0.1382 20 1 -0.3632 0.6290 0.8127 21 1 -0.3633 0.3895 -0.9510 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8899 24 1 0.6029 0.0100 3.1329 25 1 1.7997 1.5883 -2.0756 26 1 2.1517 3.0968 -1.1989 27 1 3.8740 0.0455 -2.7475 28 1 6.5163 0.4112 -2.7503 29 1 4.8073 3.5592 0.8027 30 1 5.4447 4.5633 -0.5215 31 1 3.6962 4.2526 -0.4027 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379398215.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:16 Heat of formation + Delta-G solvation = 95.037299 kcal Electronic energy + Delta-G solvation = -14188.816397 eV Core-core repulsion = 11893.821644 eV Total energy + Delta-G solvation = -2294.994753 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.93770 -37.90149 -34.17373 -33.49621 -31.78022 -30.44230 -27.61101 -27.11401 -25.05568 -22.44895 -21.83230 -20.56733 -18.55818 -17.54773 -17.08003 -16.13654 -15.47210 -15.32665 -15.21504 -14.50619 -14.03449 -13.73968 -13.50703 -13.31783 -13.20749 -13.03492 -12.73911 -12.40236 -12.29944 -11.87636 -11.58397 -11.47553 -11.40262 -10.33753 -10.09895 -9.31900 -8.80762 -7.64529 -5.16766 1.08874 1.48275 1.49691 1.55836 1.82505 2.05069 2.54532 3.37545 3.78863 3.83923 4.06919 4.34234 4.39116 4.47834 4.66203 4.77667 4.86953 4.94694 4.98083 5.18832 5.30384 5.40322 5.44001 5.60470 5.92243 5.94386 6.26128 6.27445 6.44770 6.92690 7.25424 7.91936 8.31118 9.25706 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031560 B = 0.012123 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.998493 B = 2309.082285 C = 2903.921857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.173 3.827 3 N -0.603 5.603 4 C -0.247 4.247 5 H 0.082 0.918 6 C -0.057 4.057 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.287 1.287 10 H -0.302 1.302 11 H -0.274 1.274 12 C 0.204 3.796 13 C 0.079 3.921 14 C -0.296 4.296 15 C 0.040 3.960 16 N -0.346 5.346 17 N -0.374 5.374 18 C 0.103 3.897 19 H 0.027 0.973 20 H 0.055 0.945 21 H 0.016 0.984 22 H 0.017 0.983 23 H 0.062 0.938 24 H 0.241 0.759 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.152 0.848 28 H 0.209 0.791 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.583 3.321 -7.167 8.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.049 3.951 3 N -0.325 5.325 4 C -0.377 4.377 5 H 0.099 0.901 6 C -0.251 4.251 7 N -0.573 5.573 8 Si 0.792 3.208 9 H -0.214 1.214 10 H -0.229 1.229 11 H -0.199 1.199 12 C 0.075 3.925 13 C -0.053 4.053 14 C -0.326 4.326 15 C -0.144 4.144 16 N -0.168 5.168 17 N -0.157 5.157 18 C -0.038 4.038 19 H 0.046 0.954 20 H 0.074 0.926 21 H 0.035 0.965 22 H 0.036 0.964 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.170 0.830 28 H 0.226 0.774 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.405 4.159 -6.469 8.863 hybrid contribution -0.625 -0.380 0.885 1.148 sum 3.781 3.780 -5.585 7.731 Atomic orbital electron populations 1.22131 0.98344 0.99068 0.98180 1.20787 0.92984 0.84017 0.97321 1.44328 1.74874 1.11735 1.01542 1.19652 1.28715 1.02857 0.86477 0.90052 1.25492 1.00306 0.98535 1.00739 1.70452 1.42081 1.18955 1.25768 0.85341 0.77744 0.77522 0.80231 1.21390 1.22903 1.19915 1.19546 0.85616 0.98087 0.89205 1.22899 0.94695 0.92711 0.95013 1.21455 0.94461 1.04259 1.12444 1.24241 0.96707 0.95483 0.97999 1.77128 1.05682 1.15053 1.18981 1.48601 1.03582 1.23039 1.40465 1.21925 1.04345 0.83940 0.93552 0.95408 0.92611 0.96530 0.96448 0.91969 0.94877 0.89632 0.91733 0.83006 0.77442 0.92031 0.88323 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 9.28 71.98 0.67 -4.71 16 2 C 0.17 8.25 5.68 86.38 0.49 8.74 16 3 N -0.60 -28.17 2.53 -706.36 -1.79 -29.96 16 4 C -0.25 -12.49 9.78 84.03 0.82 -11.66 16 5 H 0.08 3.86 6.22 -2.91 -0.02 3.84 16 6 C -0.06 -3.02 5.24 84.86 0.44 -2.57 16 7 N -0.92 -50.90 7.29 21.65 0.16 -50.74 16 8 Si 0.96 43.50 29.55 68.60 2.03 45.52 16 9 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 C 0.20 7.76 5.82 85.63 0.50 8.26 16 13 C 0.08 2.97 6.50 41.40 0.27 3.24 16 14 C -0.30 -10.33 10.72 21.99 0.24 -10.09 16 15 C 0.04 1.33 12.03 85.24 1.02 2.35 16 16 N -0.35 -12.99 12.58 -57.02 -0.72 -13.70 16 17 N -0.37 -14.01 4.01 -356.03 -1.43 -15.44 16 18 C 0.10 3.21 10.34 127.77 1.32 4.53 16 19 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 20 H 0.06 2.90 6.11 -2.39 -0.01 2.89 16 21 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 22 H 0.02 0.75 8.03 -2.38 -0.02 0.73 16 23 H 0.06 3.43 5.96 -2.39 -0.01 3.41 16 24 H 0.24 13.20 8.31 -92.71 -0.77 12.43 16 25 H 0.09 2.94 8.05 -2.39 -0.02 2.92 16 26 H 0.06 2.30 7.04 -2.39 -0.02 2.28 16 27 H 0.15 4.69 8.06 -2.91 -0.02 4.66 16 28 H 0.21 4.98 8.06 -2.91 -0.02 4.95 16 29 H 0.06 2.07 7.84 -2.39 -0.02 2.06 16 30 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.10 2.77 6.76 -2.39 -0.02 2.75 16 Total: -1.00 -60.81 257.53 5.14 -55.67 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 1.11 Total: 10.56 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 5.77 Total: -1.92 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -3.77 Total: -109.84 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -60.81 5.14 -55.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379398215.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.707 kcal (2) G-P(sol) polarization free energy of solvation -60.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds