Wall clock time and date at job start Thu Apr 9 2020 11:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50699 * 119.99721 * 2 1 4 4 C 1.33124 * 119.99590 * 179.97438 * 2 1 3 5 5 C 1.46954 * 119.99596 * 178.78836 * 4 2 1 6 6 O 1.21660 * 119.99822 * 4.36449 * 5 4 2 7 7 N 1.34774 * 120.00354 * 184.36819 * 5 4 2 8 8 C 1.36814 * 120.00523 * 180.02562 * 7 5 4 9 9 H 1.07991 * 120.00085 * 223.01381 * 8 7 5 10 10 C 1.39077 * 119.99778 * 43.01738 * 8 7 5 11 11 N 1.31347 * 120.00063 * 19.35130 * 10 8 7 12 12 Si 1.86803 * 119.99859 * 199.35954 * 10 8 7 13 13 H 1.48493 * 109.47302 * 59.99434 * 12 10 8 14 14 H 1.48504 * 109.46994 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46752 * 299.99293 * 12 10 8 16 16 C 1.46504 * 119.99572 * 359.97438 * 7 5 4 17 17 C 1.53003 * 117.49854 * 186.62238 * 16 7 5 18 18 C 1.53002 * 117.49316 * 117.96461 * 16 7 5 19 19 H 1.08998 * 109.47005 * 269.99846 * 1 2 3 20 20 H 1.09002 * 109.47005 * 30.00081 * 1 2 3 21 21 H 1.09003 * 109.47021 * 149.99885 * 1 2 3 22 22 H 1.09004 * 109.46791 * 240.43595 * 3 2 1 23 23 H 1.08991 * 109.47104 * 0.43842 * 3 2 1 24 24 H 1.09001 * 109.46769 * 120.43903 * 3 2 1 25 25 H 1.07999 * 120.00311 * 358.52017 * 4 2 1 26 26 H 0.96997 * 120.00208 * 184.95919 * 11 10 8 27 27 H 1.08994 * 115.55274 * 332.29899 * 16 7 5 28 28 H 1.09001 * 117.49919 * 0.02562 * 17 16 7 29 29 H 1.08994 * 117.49820 * 145.02613 * 17 16 7 30 30 H 1.09010 * 117.49773 * 214.97751 * 18 16 7 31 31 H 1.08995 * 117.50081 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1529 0.0005 5 6 3.6419 -1.1531 -0.0264 6 8 4.2514 -0.1018 0.0311 7 7 4.3142 -2.3178 -0.1148 8 6 5.6821 -2.3180 -0.1393 9 1 6.2097 -2.9588 -0.8302 10 6 6.3932 -1.4931 0.7256 11 7 5.8114 -1.0105 1.7997 12 14 8.1758 -1.0713 0.3596 13 1 8.2613 -0.3768 -0.9501 14 1 8.7036 -0.1837 1.4268 15 1 8.9798 -2.3190 0.3117 16 6 3.5802 -3.5838 -0.1835 17 6 4.3955 -4.8772 -0.1261 18 6 3.7546 -4.4339 -1.4436 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8900 -0.5139 22 1 2.8813 1.3662 -0.8939 23 1 1.5522 2.1335 0.0079 24 1 2.8930 1.3594 0.8860 25 1 1.6329 -2.0881 0.0251 26 1 6.2831 -0.3785 2.3644 27 1 2.5998 -3.5853 0.2929 28 1 5.4781 -4.7862 -0.0367 29 1 3.9514 -5.7297 0.3878 30 1 2.8890 -4.9951 -1.7959 31 1 4.4150 -4.0511 -2.2216 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379402844.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:21 Heat of formation + Delta-G solvation = 16.799605 kcal Electronic energy + Delta-G solvation = -14094.126201 eV Core-core repulsion = 11763.446056 eV Total energy + Delta-G solvation = -2330.680145 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.62076 -36.37876 -34.51165 -32.58631 -30.89102 -27.52529 -27.04829 -24.59715 -21.67904 -21.24171 -20.10362 -17.55074 -16.29559 -15.96003 -14.74956 -14.20052 -13.97949 -13.66172 -13.20861 -13.06907 -12.61547 -12.08731 -11.74836 -11.62655 -11.13938 -11.01326 -10.89307 -10.75974 -10.62244 -10.56073 -10.16245 -9.92938 -9.65690 -8.63996 -8.20757 -7.77491 -6.96166 -6.04233 -3.80219 2.40825 3.34784 3.40915 3.44779 4.33934 4.51995 4.93685 5.00724 5.37385 5.45280 5.49341 5.62355 5.83173 5.85179 5.89578 5.96324 6.17856 6.26020 6.27947 6.31302 6.52498 6.64233 6.80023 6.90815 6.97674 7.28874 7.39471 7.66042 8.33583 9.12723 9.26405 9.73243 10.40247 11.01571 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.013666 C = 0.009614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.554557 B = 2048.406635 C = 2911.810143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.098 4.098 4 C -0.195 4.195 5 C 0.506 3.494 6 O -0.531 6.531 7 N -0.423 5.423 8 C -0.343 4.343 9 H 0.076 0.924 10 C 0.073 3.927 11 N -0.827 5.827 12 Si 0.907 3.093 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.278 1.278 16 C 0.077 3.923 17 C -0.177 4.177 18 C -0.207 4.207 19 H 0.065 0.935 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.033 0.967 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.264 0.736 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 -2.451 -2.854 8.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.154 4.154 4 C -0.217 4.217 5 C 0.297 3.703 6 O -0.411 6.411 7 N -0.143 5.143 8 C -0.470 4.470 9 H 0.094 0.906 10 C -0.137 4.137 11 N -0.461 5.461 12 Si 0.734 3.266 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.204 1.204 16 C -0.029 4.029 17 C -0.215 4.215 18 C -0.247 4.247 19 H 0.084 0.916 20 H 0.080 0.920 21 H 0.079 0.921 22 H 0.092 0.908 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.125 0.875 26 H 0.074 0.926 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.159 -1.831 -2.600 7.834 hybrid contribution 0.764 -0.031 -0.046 0.766 sum -6.395 -1.862 -2.646 7.167 Atomic orbital electron populations 1.20854 0.92558 1.01928 1.01704 1.22234 0.94651 0.95831 0.96679 1.20819 0.98156 0.91997 1.04462 1.22825 0.95834 0.97250 1.05756 1.17930 0.86119 0.84199 0.82063 1.90590 1.69619 1.30252 1.50672 1.42685 1.04996 1.01181 1.65437 1.18802 0.79959 1.29322 1.18944 0.90632 1.25175 0.98588 0.97205 0.92758 1.69861 1.38834 1.26796 1.10579 0.86368 0.83682 0.78244 0.78294 1.20059 1.21243 1.20412 1.21719 0.96534 0.85196 0.99488 1.23092 1.01332 0.97233 0.99849 1.23304 1.03008 1.05590 0.92754 0.91605 0.92044 0.92119 0.90838 0.94840 0.90051 0.87490 0.92571 0.87828 0.87565 0.89887 0.89885 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.98 36.01 0.36 -1.21 16 2 C -0.09 -1.72 6.12 -101.13 -0.62 -2.34 16 3 C -0.10 -1.93 8.33 36.01 0.30 -1.63 16 4 C -0.20 -4.13 8.92 -37.83 -0.34 -4.47 16 5 C 0.51 13.34 6.88 -12.73 -0.09 13.25 16 6 O -0.53 -15.58 10.76 5.22 0.06 -15.53 16 7 N -0.42 -10.99 2.84 -109.11 -0.31 -11.30 16 8 C -0.34 -9.59 7.85 -15.02 -0.12 -9.70 16 9 H 0.08 2.04 7.35 -52.49 -0.39 1.65 16 10 C 0.07 2.10 4.34 -17.45 -0.08 2.03 16 11 N -0.83 -24.92 11.70 55.50 0.65 -24.27 16 12 Si 0.91 22.24 29.60 -169.99 -5.03 17.21 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.08 1.61 5.89 -67.93 -0.40 1.21 16 17 C -0.18 -3.32 9.80 -26.69 -0.26 -3.58 16 18 C -0.21 -3.70 10.31 -26.69 -0.28 -3.97 16 19 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 20 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 21 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 22 H 0.07 1.57 7.30 -51.93 -0.38 1.19 16 23 H 0.03 0.53 7.94 -51.93 -0.41 0.12 16 24 H 0.08 1.84 7.15 -51.93 -0.37 1.47 16 25 H 0.11 1.97 6.20 -52.49 -0.33 1.65 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.10 1.95 6.36 -51.93 -0.33 1.62 16 28 H 0.11 2.20 6.80 -51.93 -0.35 1.85 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 30 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 31 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 LS Contribution 260.74 15.07 3.93 3.93 Total: -1.00 -32.10 260.74 -6.44 -38.54 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.22 Total: 1.84 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -1.51 Total: -10.42 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.34 Total: -35.57 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: 0.06 Total: -15.53 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.10 -6.44 -38.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402844.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.342 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds