Wall clock time and date at job start Thu Apr 9 2020 11:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.50699 * 119.99721 * 2 1 4 4 C 1.33124 * 119.99590 * 179.97438 * 2 1 3 5 5 C 1.46954 * 119.99596 * 178.78836 * 4 2 1 6 6 O 1.21660 * 119.99822 * 4.36449 * 5 4 2 7 7 N 1.34774 * 120.00354 * 184.36819 * 5 4 2 8 8 C 1.36814 * 120.00523 * 180.02562 * 7 5 4 9 9 H 1.07991 * 120.00085 * 223.01381 * 8 7 5 10 10 C 1.39077 * 119.99778 * 43.01738 * 8 7 5 11 11 N 1.31347 * 120.00063 * 19.35130 * 10 8 7 12 12 Si 1.86803 * 119.99859 * 199.35954 * 10 8 7 13 13 H 1.48493 * 109.47302 * 59.99434 * 12 10 8 14 14 H 1.48504 * 109.46994 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46752 * 299.99293 * 12 10 8 16 16 C 1.46504 * 119.99572 * 359.97438 * 7 5 4 17 17 C 1.53003 * 117.49854 * 186.62238 * 16 7 5 18 18 C 1.53002 * 117.49316 * 117.96461 * 16 7 5 19 19 H 1.08998 * 109.47005 * 269.99846 * 1 2 3 20 20 H 1.09002 * 109.47005 * 30.00081 * 1 2 3 21 21 H 1.09003 * 109.47021 * 149.99885 * 1 2 3 22 22 H 1.09004 * 109.46791 * 240.43595 * 3 2 1 23 23 H 1.08991 * 109.47104 * 0.43842 * 3 2 1 24 24 H 1.09001 * 109.46769 * 120.43903 * 3 2 1 25 25 H 1.07999 * 120.00311 * 358.52017 * 4 2 1 26 26 H 0.96997 * 120.00208 * 184.95919 * 11 10 8 27 27 H 1.08994 * 115.55274 * 332.29899 * 16 7 5 28 28 H 1.09001 * 117.49919 * 0.02562 * 17 16 7 29 29 H 1.08994 * 117.49820 * 145.02613 * 17 16 7 30 30 H 1.09010 * 117.49773 * 214.97751 * 18 16 7 31 31 H 1.08995 * 117.50081 * 359.97438 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1726 -1.1529 0.0005 5 6 3.6419 -1.1531 -0.0264 6 8 4.2514 -0.1018 0.0311 7 7 4.3142 -2.3178 -0.1148 8 6 5.6821 -2.3180 -0.1393 9 1 6.2097 -2.9588 -0.8302 10 6 6.3932 -1.4931 0.7256 11 7 5.8114 -1.0105 1.7997 12 14 8.1758 -1.0713 0.3596 13 1 8.2613 -0.3768 -0.9501 14 1 8.7036 -0.1837 1.4268 15 1 8.9798 -2.3190 0.3117 16 6 3.5802 -3.5838 -0.1835 17 6 4.3955 -4.8772 -0.1261 18 6 3.7546 -4.4339 -1.4436 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 0.8900 -0.5139 21 1 -0.3633 -0.8900 -0.5139 22 1 2.8813 1.3662 -0.8939 23 1 1.5522 2.1335 0.0079 24 1 2.8930 1.3594 0.8860 25 1 1.6329 -2.0881 0.0251 26 1 6.2831 -0.3785 2.3644 27 1 2.5998 -3.5853 0.2929 28 1 5.4781 -4.7862 -0.0367 29 1 3.9514 -5.7297 0.3878 30 1 2.8890 -4.9951 -1.7959 31 1 4.4150 -4.0511 -2.2216 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379402844.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:21 Heat of formation + Delta-G solvation = -3.299421 kcal Electronic energy + Delta-G solvation = -14094.997760 eV Core-core repulsion = 11763.446056 eV Total energy + Delta-G solvation = -2331.551704 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45684 -38.04300 -36.12912 -34.56329 -32.85576 -29.14183 -28.48682 -26.53685 -23.20906 -22.88621 -21.91025 -19.28823 -18.09099 -17.74210 -16.78871 -15.93622 -15.61987 -15.29424 -14.84029 -14.62777 -14.23880 -13.73298 -13.32844 -13.20675 -12.85292 -12.80230 -12.65586 -12.43267 -12.23961 -12.20270 -12.04802 -11.66388 -11.17672 -10.68436 -9.79746 -9.72455 -8.95548 -8.16183 -5.96099 0.81062 1.35485 1.43003 1.47135 2.34436 2.82657 3.09682 3.20148 3.52179 4.01233 4.05269 4.17294 4.29909 4.42739 4.51040 4.76890 4.79267 4.88689 4.89705 5.00968 5.05168 5.13488 5.27829 5.31243 5.46064 5.48261 5.71620 5.90397 6.23254 7.05308 7.27609 7.74009 8.42854 8.87906 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.026003 B = 0.013666 C = 0.009614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.554557 B = 2048.406635 C = 2911.810143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.069 4.069 3 C -0.096 4.096 4 C -0.226 4.226 5 C 0.487 3.513 6 O -0.580 6.580 7 N -0.443 5.443 8 C -0.353 4.353 9 H 0.075 0.925 10 C 0.022 3.978 11 N -0.867 5.867 12 Si 0.965 3.035 13 H -0.282 1.282 14 H -0.287 1.287 15 H -0.257 1.257 16 C 0.044 3.956 17 C -0.173 4.173 18 C -0.180 4.180 19 H 0.084 0.916 20 H 0.083 0.917 21 H 0.081 0.919 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.043 0.957 25 H 0.137 0.863 26 H 0.258 0.742 27 H 0.127 0.873 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.677 -3.542 -3.572 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.071 4.071 3 C -0.153 4.153 4 C -0.247 4.247 5 C 0.280 3.720 6 O -0.463 6.463 7 N -0.163 5.163 8 C -0.481 4.481 9 H 0.093 0.907 10 C -0.184 4.184 11 N -0.502 5.502 12 Si 0.790 3.210 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.181 1.181 16 C -0.061 4.061 17 C -0.211 4.211 18 C -0.218 4.218 19 H 0.102 0.898 20 H 0.102 0.898 21 H 0.100 0.900 22 H 0.067 0.933 23 H 0.093 0.907 24 H 0.062 0.938 25 H 0.155 0.845 26 H 0.067 0.933 27 H 0.144 0.856 28 H 0.097 0.903 29 H 0.136 0.864 30 H 0.144 0.856 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.298 -2.976 -3.334 10.316 hybrid contribution 1.342 0.324 0.115 1.386 sum -7.956 -2.651 -3.219 8.983 Atomic orbital electron populations 1.20938 0.87959 1.04141 1.03456 1.22764 0.97650 0.94227 0.92451 1.20729 0.98427 0.94615 1.01500 1.22743 0.92900 0.99605 1.09423 1.18892 0.88475 0.83758 0.80896 1.90549 1.71198 1.31837 1.52741 1.42922 1.04737 1.03160 1.65438 1.19032 0.81626 1.29059 1.18371 0.90709 1.26001 1.02380 0.97364 0.92674 1.69973 1.40388 1.28031 1.11823 0.85463 0.79594 0.78595 0.77370 1.20828 1.21282 1.18136 1.22043 0.97473 0.83814 1.02742 1.23138 0.99799 0.97178 1.00984 1.23313 1.03609 1.03659 0.91243 0.89751 0.89776 0.90050 0.93300 0.90747 0.93801 0.84529 0.93318 0.85605 0.90321 0.86372 0.85629 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.50 9.98 71.24 0.71 -1.79 16 2 C -0.07 -2.44 6.12 -17.60 -0.11 -2.55 16 3 C -0.10 -3.78 8.33 71.24 0.59 -3.18 16 4 C -0.23 -9.34 8.92 23.41 0.21 -9.13 16 5 C 0.49 26.30 6.88 86.53 0.60 26.90 16 6 O -0.58 -35.61 10.76 -4.22 -0.05 -35.66 16 7 N -0.44 -23.38 2.84 -617.35 -1.76 -25.14 16 8 C -0.35 -20.27 7.85 84.12 0.66 -19.61 16 9 H 0.08 4.15 7.35 -2.92 -0.02 4.13 16 10 C 0.02 1.30 4.34 84.97 0.37 1.67 16 11 N -0.87 -54.43 11.70 21.69 0.25 -54.18 16 12 Si 0.96 47.09 29.60 68.60 2.03 49.12 16 13 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 14 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 15 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 16 C 0.04 1.79 5.89 44.99 0.27 2.06 16 17 C -0.17 -6.19 9.80 30.62 0.30 -5.89 16 18 C -0.18 -5.95 10.31 30.62 0.32 -5.63 16 19 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 20 H 0.08 1.61 8.05 -2.39 -0.02 1.59 16 21 H 0.08 1.60 8.07 -2.39 -0.02 1.58 16 22 H 0.05 2.15 7.30 -2.38 -0.02 2.13 16 23 H 0.07 2.24 7.94 -2.39 -0.02 2.22 16 24 H 0.04 2.06 7.15 -2.39 -0.02 2.04 16 25 H 0.14 4.69 6.20 -2.91 -0.02 4.67 16 26 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 27 H 0.13 4.44 6.36 -2.39 -0.02 4.42 16 28 H 0.08 3.25 6.80 -2.39 -0.02 3.24 16 29 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 30 H 0.13 3.12 8.14 -2.38 -0.02 3.10 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -73.97 260.74 5.50 -68.47 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.11 Total: 14.54 kcal Atomic # 6 Polarization: -21.08 SS G_CDS: 3.91 Total: -17.16 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.50 Total: -79.31 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.05 Total: -35.66 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -73.97 5.50 -68.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379402844.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.169 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds