Wall clock time and date at job start Thu Apr 9 2020 11:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32990 * 119.99933 * 2 1 4 4 C 1.47101 * 119.99760 * 172.96265 * 3 2 1 5 5 O 1.21616 * 120.00178 * 354.03299 * 4 3 2 6 6 N 1.34779 * 120.00047 * 174.03262 * 4 3 2 7 7 C 1.46506 * 119.99896 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.47031 * 180.02562 * 7 6 4 9 9 H 1.08010 * 120.00013 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00127 * 180.02562 * 8 7 6 11 11 N 1.31507 * 119.99919 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99986 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.47048 * 60.00228 * 12 10 8 14 14 H 1.48498 * 109.47007 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47503 * 300.00105 * 12 10 8 16 16 C 1.50698 * 119.99822 * 180.02562 * 2 1 3 17 17 C 1.53002 * 117.49815 * 1.64079 * 16 2 1 18 18 C 1.52996 * 60.00113 * 252.51356 * 17 16 2 19 19 H 1.08995 * 109.47698 * 89.99559 * 1 2 3 20 20 H 1.08996 * 109.47109 * 210.00451 * 1 2 3 21 21 H 1.09006 * 109.46864 * 329.99912 * 1 2 3 22 22 H 1.07995 * 120.00228 * 352.95584 * 3 2 1 23 23 H 0.96998 * 119.99979 * 359.97438 * 6 4 3 24 24 H 1.08993 * 109.47006 * 300.00349 * 7 6 4 25 25 H 1.09003 * 109.46838 * 60.00143 * 7 6 4 26 26 H 0.97005 * 120.00032 * 180.02562 * 11 10 8 27 27 H 1.09002 * 115.55225 * 147.35113 * 16 2 1 28 28 H 1.09002 * 117.50101 * 0.02562 * 17 16 2 29 29 H 1.09003 * 117.49789 * 145.02034 * 17 16 2 30 30 H 1.09006 * 117.49777 * 252.51115 * 18 17 16 31 31 H 1.09001 * 117.51622 * 107.48228 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6346 1.1565 0.1561 5 8 4.2243 0.1196 0.3934 6 7 4.3214 2.3099 0.0360 7 6 5.7782 2.3147 0.1921 8 6 6.2979 3.7178 0.0127 9 1 5.6117 4.5253 -0.1962 10 6 7.6494 3.9707 0.1152 11 7 8.4849 2.9874 0.3690 12 14 8.2937 5.7098 -0.1078 13 1 7.6840 6.5985 0.9139 14 1 9.7704 5.7145 0.0492 15 1 7.9392 6.1990 -1.4643 16 6 2.2605 -1.3051 -0.0006 17 6 1.4388 -2.5952 -0.0400 18 6 2.1540 -2.1828 1.2481 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 1.6381 2.0835 -0.1147 23 1 3.8513 3.1369 -0.1536 24 1 6.0381 1.9559 1.1879 25 1 6.2260 1.6624 -0.5576 26 1 9.4358 3.1654 0.4416 27 1 3.2126 -1.2981 -0.5311 28 1 0.3532 -2.4999 -0.0660 29 1 1.8503 -3.4371 -0.5968 30 1 3.0360 -2.7535 1.5389 31 1 1.5392 -1.8161 2.0701 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379407011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:05 Heat of formation + Delta-G solvation = -6.665932 kcal Electronic energy + Delta-G solvation = -13214.839482 eV Core-core repulsion = 10883.141795 eV Total energy + Delta-G solvation = -2331.697687 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.15887 -37.30002 -34.09899 -33.13868 -32.23278 -28.38102 -26.79439 -23.51778 -22.26070 -22.06430 -19.97287 -18.41716 -16.99002 -15.76406 -15.62755 -14.88247 -14.47470 -14.01606 -13.67363 -13.34379 -12.92501 -12.55984 -12.16268 -11.86543 -11.78433 -11.37947 -11.14936 -10.93619 -10.85597 -10.54693 -10.28097 -10.12492 -9.37321 -8.83290 -8.67764 -8.59028 -7.74872 -6.13788 -4.20487 1.70201 3.27137 3.31705 3.33401 3.95051 4.20219 4.22657 4.43821 4.74685 5.03144 5.19423 5.22201 5.28786 5.34635 5.54027 5.62009 5.71535 5.81533 5.87346 6.04510 6.27001 6.51543 6.58512 6.83722 7.37809 7.52734 7.56684 7.72967 8.01173 8.71560 8.83590 9.20581 9.46562 10.96500 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.067593 B = 0.005891 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.144071 B = 4752.192183 C = 5087.012758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.027 4.027 3 C -0.211 4.211 4 C 0.526 3.474 5 O -0.552 6.552 6 N -0.710 5.710 7 C 0.250 3.750 8 C -0.543 4.543 9 H 0.062 0.938 10 C 0.064 3.936 11 N -0.887 5.887 12 Si 0.904 3.096 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C -0.108 4.108 17 C -0.195 4.195 18 C -0.157 4.157 19 H 0.074 0.926 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.122 0.878 23 H 0.390 0.610 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.266 0.734 27 H 0.135 0.865 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.841 -4.956 -0.946 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.029 4.029 3 C -0.232 4.232 4 C 0.314 3.686 5 O -0.434 6.434 6 N -0.357 5.357 7 C 0.129 3.871 8 C -0.582 4.582 9 H 0.080 0.920 10 C -0.140 4.140 11 N -0.524 5.524 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.201 1.201 16 C -0.126 4.126 17 C -0.232 4.232 18 C -0.194 4.194 19 H 0.092 0.908 20 H 0.088 0.912 21 H 0.087 0.913 22 H 0.140 0.860 23 H 0.222 0.778 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.152 0.848 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.163 -5.705 -0.743 15.287 hybrid contribution 0.259 1.473 -0.184 1.507 sum -13.904 -4.232 -0.927 14.563 Atomic orbital electron populations 1.20948 0.91680 1.02814 1.02545 1.21670 0.94723 0.93510 0.92966 1.22600 0.94655 0.98150 1.07791 1.18509 0.87300 0.84373 0.78428 1.90691 1.71096 1.31601 1.49996 1.46401 1.10870 1.08730 1.69688 1.19075 0.73359 0.97250 0.97406 1.21213 0.92815 0.93265 1.50878 0.91984 1.24949 0.96628 0.97682 0.94745 1.69966 1.03388 1.31535 1.47508 0.86476 0.77786 0.83903 0.78742 1.20074 1.21069 1.20081 1.21438 1.00415 0.87566 1.03194 1.23119 0.98766 0.99115 1.02192 1.22760 1.02456 1.02903 0.91294 0.90764 0.91173 0.91297 0.85997 0.77773 0.95582 0.95590 0.92427 0.84765 0.88980 0.88942 0.88645 0.89336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.49 36.01 0.34 -0.89 16 2 C -0.03 -0.38 5.80 -101.17 -0.59 -0.97 16 3 C -0.21 -3.34 9.62 -37.81 -0.36 -3.71 16 4 C 0.53 11.03 7.67 -12.66 -0.10 10.94 16 5 O -0.55 -13.31 13.31 5.26 0.07 -13.24 16 6 N -0.71 -15.62 5.54 -62.67 -0.35 -15.97 16 7 C 0.25 6.80 5.43 -5.19 -0.03 6.77 16 8 C -0.54 -15.05 9.28 -34.44 -0.32 -15.37 16 9 H 0.06 1.60 7.60 -52.48 -0.40 1.21 16 10 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 12 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 16 C -0.11 -1.66 4.35 -91.77 -0.40 -2.06 16 17 C -0.20 -2.31 9.79 -26.73 -0.26 -2.57 16 18 C -0.16 -2.16 10.23 -26.73 -0.27 -2.43 16 19 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.07 0.63 6.37 -51.93 -0.33 0.30 16 21 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 22 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 23 H 0.39 7.41 8.30 -40.82 -0.34 7.07 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 27 H 0.13 2.49 6.24 -51.93 -0.32 2.17 16 28 H 0.09 0.91 6.31 -51.93 -0.33 0.59 16 29 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 268.23 15.07 4.04 4.04 Total: -1.00 -31.62 268.23 -6.84 -38.46 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.23 Total: 4.97 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -2.09 Total: -8.60 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.39 Total: -41.72 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.07 Total: -13.24 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.62 -6.84 -38.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379407011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.797 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds