Wall clock time and date at job start Thu Apr 9 2020 11:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32990 * 119.99933 * 2 1 4 4 C 1.47101 * 119.99760 * 172.96265 * 3 2 1 5 5 O 1.21616 * 120.00178 * 354.03299 * 4 3 2 6 6 N 1.34779 * 120.00047 * 174.03262 * 4 3 2 7 7 C 1.46506 * 119.99896 * 179.97438 * 6 4 3 8 8 C 1.50696 * 109.47031 * 180.02562 * 7 6 4 9 9 H 1.08010 * 120.00013 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00127 * 180.02562 * 8 7 6 11 11 N 1.31507 * 119.99919 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99986 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.47048 * 60.00228 * 12 10 8 14 14 H 1.48498 * 109.47007 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47503 * 300.00105 * 12 10 8 16 16 C 1.50698 * 119.99822 * 180.02562 * 2 1 3 17 17 C 1.53002 * 117.49815 * 1.64079 * 16 2 1 18 18 C 1.52996 * 60.00113 * 252.51356 * 17 16 2 19 19 H 1.08995 * 109.47698 * 89.99559 * 1 2 3 20 20 H 1.08996 * 109.47109 * 210.00451 * 1 2 3 21 21 H 1.09006 * 109.46864 * 329.99912 * 1 2 3 22 22 H 1.07995 * 120.00228 * 352.95584 * 3 2 1 23 23 H 0.96998 * 119.99979 * 359.97438 * 6 4 3 24 24 H 1.08993 * 109.47006 * 300.00349 * 7 6 4 25 25 H 1.09003 * 109.46838 * 60.00143 * 7 6 4 26 26 H 0.97005 * 120.00032 * 180.02562 * 11 10 8 27 27 H 1.09002 * 115.55225 * 147.35113 * 16 2 1 28 28 H 1.09002 * 117.50101 * 0.02562 * 17 16 2 29 29 H 1.09003 * 117.49789 * 145.02034 * 17 16 2 30 30 H 1.09006 * 117.49777 * 252.51115 * 18 17 16 31 31 H 1.09001 * 117.51622 * 107.48228 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6346 1.1565 0.1561 5 8 4.2243 0.1196 0.3934 6 7 4.3214 2.3099 0.0360 7 6 5.7782 2.3147 0.1921 8 6 6.2979 3.7178 0.0127 9 1 5.6117 4.5253 -0.1962 10 6 7.6494 3.9707 0.1152 11 7 8.4849 2.9874 0.3690 12 14 8.2937 5.7098 -0.1078 13 1 7.6840 6.5985 0.9139 14 1 9.7704 5.7145 0.0492 15 1 7.9392 6.1990 -1.4643 16 6 2.2605 -1.3051 -0.0006 17 6 1.4388 -2.5952 -0.0400 18 6 2.1540 -2.1828 1.2481 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5139 22 1 1.6381 2.0835 -0.1147 23 1 3.8513 3.1369 -0.1536 24 1 6.0381 1.9559 1.1879 25 1 6.2260 1.6624 -0.5576 26 1 9.4358 3.1654 0.4416 27 1 3.2126 -1.2981 -0.5311 28 1 0.3532 -2.4999 -0.0660 29 1 1.8503 -3.4371 -0.5968 30 1 3.0360 -2.7535 1.5389 31 1 1.5392 -1.8161 2.0701 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379407011.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:05 Heat of formation + Delta-G solvation = -28.296819 kcal Electronic energy + Delta-G solvation = -13215.777468 eV Core-core repulsion = 10883.141795 eV Total energy + Delta-G solvation = -2332.635673 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.71338 -38.59796 -36.08023 -34.42113 -34.15202 -29.95522 -28.36231 -25.18266 -23.80537 -23.16939 -21.64867 -19.88523 -18.61388 -17.55963 -17.14543 -16.55316 -16.11751 -15.69251 -15.19000 -14.37099 -14.16119 -14.01382 -13.81701 -13.73116 -13.10162 -12.92940 -12.69357 -12.44697 -12.23538 -12.13486 -11.64939 -11.51786 -11.27318 -10.79917 -10.41301 -9.96377 -9.57473 -8.30266 -6.47497 0.44891 1.41835 1.46609 1.54862 2.33618 2.41172 2.71960 3.04187 3.08082 3.66527 3.95049 4.06886 4.22781 4.30222 4.48692 4.68817 4.75877 4.85553 4.97933 5.05205 5.15572 5.22541 5.25504 5.30647 5.46970 5.48700 5.68843 5.80590 5.85684 6.63702 6.98989 7.22380 7.55751 8.82036 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.067593 B = 0.005891 C = 0.005503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.144071 B = 4752.192183 C = 5087.012758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.001 3.999 3 C -0.238 4.238 4 C 0.518 3.482 5 O -0.595 6.595 6 N -0.709 5.709 7 C 0.268 3.732 8 C -0.559 4.559 9 H 0.083 0.917 10 C 0.003 3.997 11 N -0.932 5.932 12 Si 0.988 3.012 13 H -0.261 1.261 14 H -0.284 1.284 15 H -0.262 1.262 16 C -0.148 4.148 17 C -0.157 4.157 18 C -0.166 4.166 19 H 0.097 0.903 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.158 0.842 23 H 0.406 0.594 24 H -0.015 1.015 25 H -0.015 1.015 26 H 0.269 0.731 27 H 0.090 0.910 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.721 -3.769 -1.350 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.001 4.001 3 C -0.258 4.258 4 C 0.309 3.691 5 O -0.479 6.479 6 N -0.358 5.358 7 C 0.145 3.855 8 C -0.597 4.597 9 H 0.101 0.899 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.810 3.190 13 H -0.186 1.186 14 H -0.209 1.209 15 H -0.186 1.186 16 C -0.167 4.167 17 C -0.193 4.193 18 C -0.203 4.203 19 H 0.115 0.885 20 H 0.106 0.894 21 H 0.105 0.895 22 H 0.176 0.824 23 H 0.242 0.758 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.143 0.857 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.096 -4.508 -1.156 17.718 hybrid contribution 1.126 0.917 -0.055 1.453 sum -15.970 -3.591 -1.212 16.414 Atomic orbital electron populations 1.21074 0.87519 1.04625 1.04415 1.22164 0.97282 0.92015 0.88652 1.22486 0.90934 1.00652 1.11753 1.19487 0.89689 0.83093 0.76840 1.90679 1.72642 1.32944 1.51645 1.46152 1.08765 1.10266 1.70568 1.18492 0.76570 0.96731 0.93688 1.21606 0.93677 0.93523 1.50856 0.89898 1.26105 0.96846 1.02846 0.93841 1.70139 1.03883 1.34537 1.48522 0.85171 0.76865 0.77474 0.79472 1.18583 1.20929 1.18615 1.21367 1.00317 0.90264 1.04704 1.23231 1.00051 0.96557 0.99483 1.22825 1.02814 1.02591 0.92067 0.88510 0.89441 0.89462 0.82435 0.75825 0.99743 0.99749 0.92208 0.89199 0.85666 0.88232 0.90126 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.49 71.24 0.68 -1.15 16 2 C 0.00 0.02 5.80 -17.62 -0.10 -0.08 16 3 C -0.24 -7.28 9.62 23.43 0.23 -7.06 16 4 C 0.52 22.60 7.67 86.57 0.66 23.26 16 5 O -0.59 -30.75 13.31 -4.08 -0.05 -30.80 16 6 N -0.71 -32.37 5.54 -470.44 -2.61 -34.97 16 7 C 0.27 15.49 5.43 85.63 0.46 15.96 16 8 C -0.56 -31.57 9.28 25.60 0.24 -31.33 16 9 H 0.08 4.23 7.60 -2.91 -0.02 4.21 16 10 C 0.00 0.18 5.46 84.66 0.46 0.64 16 11 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 12 Si 0.99 43.17 29.54 68.60 2.03 45.20 16 13 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 14 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 16 C -0.15 -4.51 4.35 -11.54 -0.05 -4.56 16 17 C -0.16 -3.30 9.79 30.59 0.30 -3.00 16 18 C -0.17 -4.44 10.23 30.59 0.31 -4.13 16 19 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 20 H 0.09 1.08 6.37 -2.39 -0.02 1.06 16 21 H 0.09 1.09 8.07 -2.38 -0.02 1.07 16 22 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 23 H 0.41 15.49 8.30 -92.71 -0.77 14.72 16 24 H -0.02 -1.00 8.14 -2.39 -0.02 -1.01 16 25 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 26 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 27 H 0.09 3.57 6.24 -2.39 -0.01 3.56 16 28 H 0.13 1.85 6.31 -2.39 -0.02 1.83 16 29 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -73.77 268.23 3.19 -70.58 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.35 Total: 18.84 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 3.19 Total: -11.45 kcal Atomic # 7 Polarization: -90.05 SS G_CDS: -2.32 Total: -92.37 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.05 Total: -30.80 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -73.77 3.19 -70.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379407011.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.280 kcal (2) G-P(sol) polarization free energy of solvation -73.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds