Wall clock time and date at job start Thu Apr 9 2020 11:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99962 * 2 1 4 4 H 1.48501 * 109.47042 * 269.99835 * 3 2 1 5 5 H 1.48501 * 109.47088 * 30.00257 * 3 2 1 6 6 H 1.48507 * 109.46833 * 149.99876 * 3 2 1 7 7 C 1.37882 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00125 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99943 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99904 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00289 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.99803 * 179.97438 * 11 10 9 14 14 C 1.53002 * 109.47301 * 179.97438 * 13 11 10 15 15 H 1.09003 * 110.43530 * 52.64794 * 14 13 11 16 16 C 1.51102 * 110.38979 * 290.30642 * 14 13 11 17 17 C 1.30526 * 111.10814 * 224.75168 * 16 14 13 18 18 C 1.51103 * 111.10016 * 359.97438 * 17 16 14 19 19 C 1.54632 * 110.39075 * 174.99956 * 14 13 11 20 20 H 0.96993 * 120.00524 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47384 * 59.99694 * 9 7 2 22 22 H 1.09004 * 109.46886 * 300.00058 * 9 7 2 23 23 H 0.96997 * 119.99511 * 359.97438 * 10 9 7 24 24 H 1.09001 * 109.47499 * 60.00199 * 13 11 10 25 25 H 1.08996 * 109.47477 * 299.99615 * 13 11 10 26 26 H 1.07999 * 124.44781 * 44.72146 * 16 14 13 27 27 H 1.07990 * 124.45277 * 179.97438 * 17 16 14 28 28 H 1.09002 * 110.39081 * 257.62940 * 18 17 16 29 29 H 1.09004 * 110.48226 * 135.29835 * 18 17 16 30 30 H 1.08995 * 111.03420 * 25.41008 * 19 14 13 31 31 H 1.08998 * 111.03825 * 261.47955 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0015 11 6 1.7538 -4.8834 -0.0019 12 8 0.5615 -5.1050 -0.0019 13 6 2.7331 -6.0288 -0.0022 14 6 1.9682 -7.3539 -0.0020 15 1 1.2409 -7.3736 -0.8137 16 6 1.2797 -7.5641 1.3266 17 6 1.4472 -8.7857 1.7547 18 6 2.2747 -9.5941 0.7827 19 6 2.9493 -8.5423 -0.1286 20 1 -0.4850 0.8399 -0.0004 21 1 0.6247 -2.5564 -0.8919 22 1 0.6240 -2.5575 0.8880 23 1 3.1567 -3.4354 -0.0010 24 1 3.3598 -5.9714 0.8878 25 1 3.3597 -5.9709 -0.8921 26 1 0.7226 -6.8032 1.8531 27 1 1.0469 -9.1684 2.6818 28 1 1.6348 -10.2521 0.1947 29 1 3.0287 -10.1746 1.3144 30 1 3.9374 -8.2756 0.2460 31 1 3.0053 -8.8954 -1.1583 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388248197.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:11 Heat of formation + Delta-G solvation = -39.650957 kcal Electronic energy + Delta-G solvation = -13217.193105 eV Core-core repulsion = 10884.065080 eV Total energy + Delta-G solvation = -2333.128025 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.40502 -37.80378 -34.13310 -32.33045 -31.25502 -28.85046 -27.42286 -25.05050 -22.38478 -20.41438 -19.65727 -18.52431 -16.99502 -16.03004 -15.47138 -15.29970 -14.83997 -14.46490 -14.00385 -12.89223 -12.74588 -12.03024 -11.92482 -11.74543 -11.69975 -11.54715 -11.20528 -11.07563 -10.88716 -10.86819 -10.57794 -10.29565 -9.38121 -8.94334 -8.75996 -8.71646 -7.83761 -6.15616 -4.22487 2.45257 3.24690 3.30724 3.33253 3.45416 4.13847 4.38773 4.70633 4.76698 5.00438 5.20380 5.31270 5.43697 5.55500 5.65155 5.72761 5.78811 5.84672 5.96333 6.05314 6.29683 6.39798 6.73256 7.05921 7.33627 7.48731 7.54106 7.69033 7.98952 8.67486 8.80572 9.16168 9.44524 10.94679 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.084137 B = 0.005469 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 332.709724 B = 5118.871826 C = 5279.201802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.716 5.716 11 C 0.496 3.504 12 O -0.556 6.556 13 C -0.134 4.134 14 C -0.054 4.054 15 H 0.090 0.910 16 C -0.129 4.129 17 C -0.195 4.195 18 C -0.096 4.096 19 C -0.123 4.123 20 H 0.266 0.734 21 H 0.026 0.974 22 H 0.026 0.974 23 H 0.390 0.610 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.126 0.874 27 H 0.119 0.881 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.409 -14.178 0.843 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.364 5.364 11 C 0.281 3.719 12 O -0.435 6.435 13 C -0.174 4.174 14 C -0.073 4.073 15 H 0.108 0.892 16 C -0.147 4.147 17 C -0.213 4.213 18 C -0.133 4.133 19 C -0.160 4.160 20 H 0.075 0.925 21 H 0.044 0.956 22 H 0.044 0.956 23 H 0.222 0.778 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.144 0.856 27 H 0.137 0.863 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.380 -14.176 0.839 15.568 hybrid contribution 0.788 1.143 0.057 1.389 sum 7.168 -13.033 0.896 14.901 Atomic orbital electron populations 1.69975 1.06123 1.27277 1.48990 1.24958 0.94906 0.99455 0.94716 0.86417 0.79626 0.82663 0.78217 1.20460 1.21002 1.19747 1.21244 0.93259 0.90528 1.53107 0.91927 1.19083 0.88382 0.82104 0.97632 1.46494 1.11017 1.06330 1.72537 1.20534 0.89635 0.84422 0.77320 1.90646 1.17000 1.84951 1.50932 1.21716 0.98467 0.93531 1.03683 1.20817 0.96310 0.92807 0.97354 0.89185 1.23378 0.98153 0.97196 0.95971 1.23181 1.02327 0.96058 0.99694 1.21302 0.98045 0.97695 0.96283 1.22570 0.98566 0.95124 0.99776 0.92465 0.95639 0.95646 0.77782 0.89425 0.89371 0.85620 0.86295 0.91188 0.91694 0.91018 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.89 9.28 -34.44 -0.32 -15.21 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 10 N -0.72 -15.24 5.55 -61.47 -0.34 -15.58 16 11 C 0.50 9.90 7.63 -10.99 -0.08 9.82 16 12 O -0.56 -13.30 14.92 5.56 0.08 -13.22 16 13 C -0.13 -1.90 5.09 -27.88 -0.14 -2.04 16 14 C -0.05 -0.75 2.52 -90.72 -0.23 -0.98 16 15 H 0.09 1.39 7.90 -51.93 -0.41 0.98 16 16 C -0.13 -1.89 9.26 -35.70 -0.33 -2.22 16 17 C -0.19 -2.39 10.78 -35.70 -0.38 -2.78 16 18 C -0.10 -1.00 6.81 -26.82 -0.18 -1.18 16 19 C -0.12 -1.30 6.71 -25.01 -0.17 -1.46 16 20 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 21 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 23 H 0.39 7.10 8.32 -40.82 -0.34 6.76 16 24 H 0.09 1.11 8.13 -51.93 -0.42 0.68 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.13 2.10 7.58 -52.49 -0.40 1.70 16 27 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.69 7.91 -51.93 -0.41 0.27 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 266.24 15.07 4.01 4.01 Total: -1.00 -31.60 266.24 -6.97 -38.57 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.47 Total: 3.62 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.96 Total: -7.72 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.40 Total: -41.20 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.60 -6.97 -38.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388248197.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.082 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds