Wall clock time and date at job start Thu Apr 9 2020 11:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99832 * 2 1 4 4 H 1.48504 * 109.47006 * 269.99875 * 3 2 1 5 5 H 1.48504 * 109.47123 * 29.99749 * 3 2 1 6 6 H 1.48498 * 109.47293 * 149.99706 * 3 2 1 7 7 C 1.37875 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99852 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00363 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46976 * 180.02562 * 9 7 2 11 11 C 1.34784 * 119.99430 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99987 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.99822 * 179.97438 * 11 10 9 14 14 C 1.52995 * 109.47526 * 180.02562 * 13 11 10 15 15 H 1.09005 * 110.34285 * 307.29383 * 14 13 11 16 16 C 1.51100 * 110.38835 * 69.69591 * 14 13 11 17 17 C 1.30724 * 111.14096 * 135.34907 * 16 14 13 18 18 C 1.51106 * 110.98690 * 359.84700 * 17 16 14 19 19 C 1.54630 * 110.39121 * 185.00436 * 14 13 11 20 20 H 0.96998 * 120.00125 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.47034 * 59.99805 * 9 7 2 22 22 H 1.09005 * 109.46757 * 300.00186 * 9 7 2 23 23 H 0.96990 * 120.00406 * 359.97438 * 10 9 7 24 24 H 1.09004 * 109.47061 * 60.00515 * 13 11 10 25 25 H 1.09002 * 109.47721 * 300.00949 * 13 11 10 26 26 H 1.08003 * 124.44615 * 315.27786 * 16 14 13 27 27 H 1.08003 * 124.56566 * 179.97438 * 17 16 14 28 28 H 1.09002 * 110.38747 * 224.83749 * 18 17 16 29 29 H 1.09000 * 110.38500 * 102.57217 * 18 17 16 30 30 H 1.09003 * 111.03946 * 98.52311 * 19 14 13 31 31 H 1.09001 * 111.07005 * 334.60155 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3250 -2.8214 0.0009 12 8 6.1131 -1.8995 0.0014 13 6 5.8274 -4.2421 0.0014 14 6 7.3574 -4.2422 0.0019 15 1 7.7366 -3.6231 -0.8112 16 6 7.8834 -3.7504 1.3302 17 6 8.8605 -4.5055 1.7591 18 6 9.1438 -5.6277 0.7876 19 6 7.8962 -5.6861 -0.1241 20 1 -0.4850 0.8400 -0.0004 21 1 3.8745 -0.6799 0.8911 22 1 3.8752 -0.6803 -0.8889 23 1 3.3696 -3.3124 0.0010 24 1 5.4641 -4.7563 -0.8884 25 1 5.4641 -4.7558 0.8915 26 1 7.5029 -2.8873 1.8563 27 1 9.3937 -4.3502 2.6854 28 1 9.2684 -6.5698 1.3216 29 1 10.0339 -5.4049 0.1993 30 1 8.1741 -5.9116 -1.1537 31 1 7.1713 -6.4089 0.2505 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388248199.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:12 Heat of formation + Delta-G solvation = -57.577356 kcal Electronic energy + Delta-G solvation = -13268.569435 eV Core-core repulsion = 10934.664063 eV Total energy + Delta-G solvation = -2333.905372 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.85966 -39.09654 -36.13080 -34.41148 -32.56679 -29.99383 -29.67127 -26.38423 -23.88874 -21.60123 -21.20990 -19.69823 -19.02184 -17.66885 -17.14329 -16.75387 -16.33435 -16.01313 -15.54738 -14.73637 -14.48178 -14.26147 -13.50355 -13.14178 -12.87298 -12.72711 -12.70485 -12.63676 -12.04259 -11.97048 -11.94581 -11.67695 -11.64220 -10.93497 -10.70464 -9.90654 -9.75294 -8.41727 -6.48626 1.30650 1.32866 1.40403 1.45582 1.78939 2.26360 2.53787 2.93597 3.70706 3.77386 4.03351 4.10372 4.39761 4.56914 4.61726 4.70735 4.78719 4.81018 5.00064 5.02265 5.04194 5.14680 5.25309 5.33855 5.46003 5.54998 5.71570 6.01063 6.08430 6.52656 6.87968 7.14814 7.45749 8.73112 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.070582 B = 0.006031 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.607582 B = 4641.436478 C = 4874.592306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.231 3.769 10 N -0.710 5.710 11 C 0.495 3.505 12 O -0.596 6.596 13 C -0.121 4.121 14 C -0.055 4.055 15 H 0.067 0.933 16 C -0.172 4.172 17 C -0.172 4.172 18 C -0.098 4.098 19 C -0.114 4.114 20 H 0.273 0.727 21 H 0.009 0.991 22 H 0.009 0.991 23 H 0.409 0.591 24 H 0.120 0.880 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.131 0.869 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.267 -12.377 0.744 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.107 3.893 10 N -0.360 5.360 11 C 0.283 3.717 12 O -0.478 6.478 13 C -0.160 4.160 14 C -0.074 4.074 15 H 0.086 0.914 16 C -0.190 4.190 17 C -0.190 4.190 18 C -0.134 4.134 19 C -0.151 4.151 20 H 0.082 0.918 21 H 0.027 0.973 22 H 0.027 0.973 23 H 0.244 0.756 24 H 0.138 0.862 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.149 0.851 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.630 -11.615 0.737 19.488 hybrid contribution -0.519 1.060 0.123 1.186 sum 15.111 -10.556 0.859 18.453 Atomic orbital electron populations 1.69977 1.07648 1.28630 1.50705 1.25594 0.95536 1.02634 0.93568 0.85859 0.79143 0.79413 0.79464 1.18928 1.19657 1.18797 1.21311 0.89983 0.94620 1.52610 0.92206 1.19060 0.93354 0.81505 0.95372 1.46114 1.07107 1.09470 1.73282 1.21608 0.81771 0.93204 0.75080 1.90621 1.56268 1.48491 1.52420 1.21758 0.96752 0.91250 1.06285 1.20831 0.92969 0.97600 0.96011 0.91450 1.23310 0.99188 0.99201 0.97280 1.23589 0.97822 0.97677 0.99867 1.21390 0.98462 0.97616 0.95979 1.22575 0.97401 0.94110 1.01029 0.91809 0.97332 0.97313 0.75581 0.86183 0.87083 0.88824 0.85071 0.89426 0.90219 0.89401 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.96 21.45 0.30 -55.74 16 2 C 0.03 1.55 5.47 84.65 0.46 2.01 16 3 Si 0.94 44.79 27.47 68.60 1.88 46.67 16 4 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -12.60 6.54 99.48 0.65 -11.95 16 7 C -0.55 -30.69 9.83 25.60 0.25 -30.44 16 8 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 9 C 0.23 11.61 4.50 85.63 0.38 12.00 16 10 N -0.71 -28.81 5.55 -466.78 -2.59 -31.40 16 11 C 0.50 18.54 7.63 87.65 0.67 19.21 16 12 O -0.60 -27.24 14.92 -3.04 -0.05 -27.28 16 13 C -0.12 -3.01 5.09 29.84 0.15 -2.85 16 14 C -0.06 -1.37 2.52 -10.86 -0.03 -1.39 16 15 H 0.07 1.94 7.90 -2.38 -0.02 1.92 16 16 C -0.17 -4.70 9.27 26.06 0.24 -4.46 16 17 C -0.17 -3.67 10.79 26.06 0.28 -3.39 16 18 C -0.10 -1.58 6.80 30.53 0.21 -1.37 16 19 C -0.11 -1.87 6.71 31.71 0.21 -1.66 16 20 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 21 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 22 H 0.01 0.47 7.57 -2.38 -0.02 0.45 16 23 H 0.41 14.37 8.32 -92.72 -0.77 13.59 16 24 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 25 H 0.11 2.35 8.13 -2.39 -0.02 2.33 16 26 H 0.09 3.11 7.58 -2.91 -0.02 3.08 16 27 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.20 7.91 -2.39 -0.02 1.18 16 Total: -1.00 -68.78 262.65 2.67 -66.11 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.28 Total: 13.98 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 2.84 Total: -12.35 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -2.29 Total: -87.13 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -68.78 2.67 -66.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388248199.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.531 kcal (2) G-P(sol) polarization free energy of solvation -68.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds