Wall clock time and date at job start Thu Apr 9 2020 11:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00230 * 2 1 4 4 H 1.48500 * 109.46795 * 269.99926 * 3 2 1 5 5 H 1.48507 * 109.47005 * 29.99230 * 3 2 1 6 6 H 1.48491 * 109.47461 * 149.99375 * 3 2 1 7 7 C 1.37881 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99838 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99755 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47090 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47330 * 180.02562 * 10 9 7 12 12 C 1.46899 * 110.99957 * 179.97438 * 11 10 9 13 13 H 1.08999 * 112.88235 * 23.66053 * 12 11 10 14 14 C 1.53946 * 113.66571 * 252.18684 * 12 11 10 15 15 C 1.53958 * 87.29612 * 220.79744 * 14 12 11 16 16 C 1.52907 * 86.78205 * 24.73272 * 15 14 12 17 17 C 1.52909 * 121.13536 * 209.38733 * 16 15 14 18 18 C 1.53952 * 86.78252 * 209.38099 * 17 16 15 19 19 C 1.53064 * 121.17777 * 100.75092 * 16 15 14 20 20 H 0.96998 * 120.00164 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47326 * 60.00447 * 9 7 2 22 22 H 1.08997 * 109.47530 * 300.00514 * 9 7 2 23 23 H 1.08997 * 109.46916 * 59.99896 * 10 9 7 24 24 H 1.08997 * 109.47109 * 300.00472 * 10 9 7 25 25 H 1.00894 * 110.99678 * 56.04600 * 11 10 9 26 26 H 1.09000 * 113.57626 * 335.39952 * 14 12 11 27 27 H 1.08990 * 113.58169 * 106.11411 * 14 12 11 28 28 H 1.08994 * 113.65977 * 270.26062 * 15 14 12 29 29 H 1.08997 * 113.65995 * 139.20186 * 15 14 12 30 30 H 1.09000 * 113.66588 * 94.90895 * 17 16 15 31 31 H 1.09004 * 113.74458 * 323.86080 * 17 16 15 32 32 H 1.09002 * 113.58142 * 139.33437 * 18 17 16 33 33 H 1.09004 * 113.57653 * 270.05037 * 18 17 16 34 34 H 1.09006 * 113.66264 * 36.13819 * 19 16 15 35 35 H 1.09001 * 113.71778 * 265.03884 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 7 5.4905 -2.6366 0.0022 12 6 6.0169 -4.0080 0.0027 13 1 5.3104 -4.7334 -0.4008 14 6 6.6399 -4.4303 1.3456 15 6 7.7529 -5.1143 0.5310 16 6 7.4223 -4.1261 -0.5881 17 6 7.6341 -4.4952 -2.0568 18 6 7.8743 -2.9956 -2.3090 19 6 8.2846 -2.8847 -0.8293 20 1 -0.4850 0.8400 -0.0004 21 1 3.8744 -0.6801 0.8911 22 1 3.8752 -0.6804 -0.8887 23 1 3.6585 -3.1502 -0.8892 24 1 3.6577 -3.1506 0.8907 25 1 5.8514 -2.1108 0.7840 26 1 6.9918 -3.5913 1.9459 27 1 6.0225 -5.1265 1.9130 28 1 7.5347 -6.1516 0.2772 29 1 8.7490 -4.9803 0.9527 30 1 6.7394 -4.8829 -2.5439 31 1 8.5140 -5.1145 -2.2313 32 1 8.6899 -2.7954 -3.0039 33 1 6.9664 -2.4435 -2.5522 34 1 9.3481 -3.0504 -0.6566 35 1 7.9089 -1.9876 -0.3372 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388270125.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:17 Heat of formation + Delta-G solvation = 29.021197 kcal Electronic energy + Delta-G solvation = -13862.305762 eV Core-core repulsion = 11667.988680 eV Total energy + Delta-G solvation = -2194.317083 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35896 -35.65704 -34.00556 -32.36501 -29.43082 -25.64811 -24.91992 -24.38712 -22.72787 -20.84596 -20.36399 -17.75656 -16.77384 -15.60962 -15.24423 -15.22200 -14.34351 -14.00962 -13.30420 -12.78875 -12.67501 -12.37768 -12.21483 -12.05495 -11.82055 -11.30637 -11.13615 -11.02262 -10.73512 -10.41909 -10.12524 -9.96189 -9.78423 -9.63385 -9.47367 -9.20548 -8.52219 -7.81356 -6.03026 -4.01167 3.33866 3.40538 3.45425 4.44302 4.47518 4.60700 4.68004 4.82162 4.93412 5.05360 5.17977 5.31739 5.52187 5.65695 5.69186 5.78094 5.81932 5.87164 5.96378 6.06642 6.13883 6.18606 6.25370 6.34653 6.40505 6.65968 6.67809 6.80664 7.18906 7.41992 7.66444 7.79257 7.95661 8.55038 9.01324 9.59542 11.10409 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.045215 B = 0.006808 C = 0.006439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.109322 B = 4111.695925 C = 4347.691188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.680 5.680 12 C 0.093 3.907 13 H 0.094 0.906 14 C -0.167 4.167 15 C -0.129 4.129 16 C -0.095 4.095 17 C -0.129 4.129 18 C -0.131 4.131 19 C -0.110 4.110 20 H 0.263 0.737 21 H 0.012 0.988 22 H 0.020 0.980 23 H 0.063 0.937 24 H 0.021 0.979 25 H 0.336 0.664 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.748 -7.919 -0.388 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.308 5.308 12 C -0.018 4.018 13 H 0.112 0.888 14 C -0.207 4.207 15 C -0.166 4.166 16 C -0.096 4.096 17 C -0.166 4.166 18 C -0.169 4.169 19 C -0.147 4.147 20 H 0.073 0.927 21 H 0.031 0.969 22 H 0.038 0.962 23 H 0.081 0.919 24 H 0.039 0.961 25 H 0.155 0.845 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.608 -7.710 -1.076 18.342 hybrid contribution 0.103 0.566 0.938 1.100 sum 16.710 -7.144 -0.138 18.174 Atomic orbital electron populations 1.69915 1.06327 1.26894 1.51223 1.25013 0.94729 0.99215 0.94508 0.86728 0.80267 0.83423 0.78548 1.20267 1.21522 1.19004 1.21084 0.89464 0.94481 1.50900 0.91158 1.19543 0.96612 0.91987 0.96620 1.21974 0.84271 0.99875 0.99320 1.60461 1.09632 1.11597 1.49158 1.22688 0.93743 0.91252 0.94111 0.88812 1.23601 0.98582 1.00862 0.97616 1.22623 0.98510 0.98344 0.97162 1.22704 0.96810 0.96453 0.93608 1.22709 1.01060 0.96888 0.95973 1.22733 1.01575 0.96457 0.96097 1.22467 0.97641 0.97603 0.96995 0.92750 0.96947 0.96167 0.91892 0.96056 0.84542 0.90199 0.91795 0.90359 0.91661 0.91752 0.90804 0.92600 0.89268 0.91140 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.50 5.47 -3.82 -0.02 1.48 16 11 N -0.68 -11.37 5.73 -106.25 -0.61 -11.98 16 12 C 0.09 1.32 4.07 -67.26 -0.27 1.04 16 13 H 0.09 1.38 7.87 -51.93 -0.41 0.97 16 14 C -0.17 -2.04 7.70 -25.75 -0.20 -2.24 16 15 C -0.13 -1.40 7.84 -26.28 -0.21 -1.61 16 16 C -0.09 -1.16 1.09 -154.63 -0.17 -1.33 16 17 C -0.13 -1.52 7.84 -26.28 -0.21 -1.72 16 18 C -0.13 -1.63 8.08 -25.75 -0.21 -1.84 16 19 C -0.11 -1.33 7.54 -26.20 -0.20 -1.53 16 20 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 21 H 0.01 0.30 7.20 -51.93 -0.37 -0.08 16 22 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 23 H 0.06 1.31 8.13 -51.93 -0.42 0.89 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.34 5.42 8.09 -39.29 -0.32 5.10 16 26 H 0.08 0.97 7.82 -51.93 -0.41 0.56 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.00 7.49 -51.93 -0.39 0.61 16 LS Contribution 280.70 15.07 4.23 4.23 Total: -1.00 -29.95 280.70 -8.40 -38.35 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.10 Total: 1.05 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.03 Total: -21.66 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.17 Total: -39.46 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.95 -8.40 -38.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388270125.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.372 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds