Wall clock time and date at job start Thu Apr 9 2020 11:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48498 * 109.46744 * 269.99599 * 3 2 1 5 5 H 1.48500 * 109.47304 * 29.99187 * 3 2 1 6 6 H 1.48498 * 109.47341 * 149.99790 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47254 * 179.97438 * 11 10 9 13 13 C 1.50649 * 111.00464 * 278.09464 * 12 11 10 14 14 C 1.57337 * 100.34425 * 298.23936 * 13 12 11 15 15 C 1.54842 * 103.38655 * 326.41259 * 14 13 12 16 16 C 1.50649 * 111.00189 * 169.99885 * 12 11 10 17 17 C 1.55840 * 101.02974 * 170.24176 * 16 12 11 18 18 C 1.54840 * 103.51982 * 327.00554 * 17 16 12 19 19 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 21 21 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 22 22 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 23 23 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 24 24 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 25 25 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 26 26 H 1.09002 * 115.87804 * 63.33800 * 13 12 11 27 27 H 1.09000 * 110.33274 * 208.11464 * 14 13 12 28 28 H 1.08997 * 111.15629 * 85.10534 * 14 13 12 29 29 H 1.08997 * 110.60974 * 241.89497 * 15 14 13 30 30 H 1.09002 * 110.74149 * 118.97835 * 15 14 13 31 31 H 1.09009 * 115.88101 * 295.93775 * 16 12 11 32 32 H 1.08995 * 110.61646 * 85.51511 * 17 16 12 33 33 H 1.09005 * 110.61464 * 208.50340 * 17 16 12 34 34 H 1.08994 * 110.61537 * 241.49324 * 18 17 16 35 35 H 1.09000 * 110.74204 * 118.57246 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4350 -6.1036 0.0006 13 6 2.9354 -6.3855 -1.3922 14 6 1.5867 -6.7719 -2.1042 15 6 0.7799 -7.4763 -0.9858 16 6 1.7333 -7.4140 0.2454 17 6 2.8789 -8.4266 -0.0562 18 6 3.6964 -7.7272 -1.1698 19 1 -0.4850 0.8400 -0.0004 20 1 0.6248 -2.5571 -0.8896 21 1 0.6242 -2.5567 0.8903 22 1 2.8720 -3.6043 0.8905 23 1 2.8720 -3.6042 -0.8894 24 1 0.8534 -5.0451 -0.8886 25 1 0.8541 -5.0445 0.8914 26 1 3.5028 -5.5839 -1.8651 27 1 1.7772 -7.4576 -2.9298 28 1 1.0599 -5.8853 -2.4570 29 1 0.5707 -8.5110 -1.2572 30 1 -0.1465 -6.9395 -0.7815 31 1 1.2534 -7.5223 1.2182 32 1 3.4942 -8.5849 0.8295 33 1 2.4712 -9.3715 -0.4155 34 1 3.6938 -8.3253 -2.0809 35 1 4.7176 -7.5388 -0.8386 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388297749.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:19 Heat of formation + Delta-G solvation = 2.837803 kcal Electronic energy + Delta-G solvation = -13997.740402 eV Core-core repulsion = 11802.287922 eV Total energy + Delta-G solvation = -2195.452480 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.50934 -34.37595 -32.37993 -30.49200 -29.56666 -29.19982 -25.96327 -22.88073 -22.10178 -20.43078 -19.62537 -18.97683 -16.41739 -15.91059 -15.57855 -14.92367 -14.40547 -13.88696 -12.93463 -12.74223 -12.33510 -12.07418 -11.82559 -11.71265 -11.38111 -11.33312 -11.10290 -10.87509 -10.71061 -10.68395 -10.47137 -10.31828 -9.92287 -9.55011 -9.25153 -9.00406 -8.29952 -8.21862 -5.95384 -3.97096 3.35002 3.40891 3.45138 4.07062 4.50270 4.64476 4.77251 4.99152 5.16478 5.29958 5.37259 5.40358 5.41567 5.47717 5.56263 5.78908 5.85032 5.92567 5.95509 6.01327 6.08605 6.28560 6.31152 6.41217 6.44937 6.70916 6.86670 7.02582 7.26111 7.46161 7.74373 7.90077 8.05858 8.49810 9.10312 9.66640 11.16166 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.063587 B = 0.006104 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.235508 B = 4585.993887 C = 4724.954664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.099 4.099 11 C 0.034 3.966 12 N -0.494 5.494 13 C 0.046 3.954 14 C -0.153 4.153 15 C -0.150 4.150 16 C 0.040 3.960 17 C -0.112 4.112 18 C -0.113 4.113 19 H 0.259 0.741 20 H 0.012 0.988 21 H 0.014 0.986 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.112 0.888 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 -16.071 -2.463 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.137 4.137 11 C -0.094 4.094 12 N -0.217 5.217 13 C -0.063 4.063 14 C -0.192 4.192 15 C -0.189 4.189 16 C -0.068 4.068 17 C -0.150 4.150 18 C -0.151 4.151 19 H 0.069 0.931 20 H 0.031 0.969 21 H 0.033 0.967 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.130 0.870 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.856 -15.769 -2.004 16.357 hybrid contribution -0.401 0.853 -0.647 1.143 sum 3.455 -14.916 -2.652 15.539 Atomic orbital electron populations 1.69971 1.06059 1.26485 1.51216 1.25031 0.94840 0.99228 0.95446 0.86601 0.79892 0.83514 0.78052 1.20720 1.21252 1.19854 1.21273 0.93060 0.91090 1.50097 0.92706 1.19075 0.94069 0.91490 0.96953 1.21536 0.98959 0.92666 1.00540 1.22533 0.94515 0.91723 1.00655 1.67667 1.30041 1.02018 1.21927 1.24701 0.95167 0.96697 0.89734 1.23500 0.97285 1.00373 0.98065 1.23229 0.99084 1.00513 0.96103 1.24435 0.93669 0.91217 0.97510 1.22553 0.96800 0.96892 0.98797 1.22544 0.99110 0.95334 0.98096 0.93091 0.96932 0.96718 0.92907 0.93794 0.93903 0.91757 0.86996 0.91675 0.90996 0.91663 0.91521 0.87464 0.91396 0.91872 0.91847 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.10 -2.17 5.35 -26.74 -0.14 -2.31 16 11 C 0.03 0.62 4.32 -3.83 -0.02 0.60 16 12 N -0.49 -7.85 5.54 -204.66 -1.13 -8.99 16 13 C 0.05 0.64 4.77 -61.72 -0.29 0.34 16 14 C -0.15 -1.99 5.69 -23.40 -0.13 -2.12 16 15 C -0.15 -1.85 5.65 -24.24 -0.14 -1.99 16 16 C 0.04 0.52 4.89 -62.57 -0.31 0.22 16 17 C -0.11 -1.25 6.45 -24.24 -0.16 -1.40 16 18 C -0.11 -1.30 6.46 -24.24 -0.16 -1.45 16 19 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 20 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 21 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 23 H 0.04 0.95 7.66 -51.93 -0.40 0.55 16 24 H 0.04 0.78 5.02 -51.93 -0.26 0.52 16 25 H 0.06 1.19 8.09 -51.93 -0.42 0.77 16 26 H 0.11 1.63 7.78 -51.93 -0.40 1.22 16 27 H 0.06 0.73 7.89 -51.93 -0.41 0.32 16 28 H 0.07 1.03 6.91 -51.93 -0.36 0.67 16 29 H 0.06 0.69 7.85 -51.93 -0.41 0.29 16 30 H 0.07 0.87 7.63 -51.93 -0.40 0.47 16 31 H 0.11 1.33 8.14 -51.92 -0.42 0.90 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 34 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 272.29 15.07 4.10 4.10 Total: -1.00 -30.55 272.29 -9.16 -39.71 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -5.95 Total: -3.51 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -1.89 Total: -21.58 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.40 Total: -35.83 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.55 -9.16 -39.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388297749.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.545 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds