Wall clock time and date at job start Thu Apr 9 2020 11:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00371 * 2 1 4 4 H 1.48498 * 109.47377 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47064 * 300.00223 * 3 2 1 6 6 H 1.48499 * 109.47185 * 59.99786 * 3 2 1 7 7 C 1.37880 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99713 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47311 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47201 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00046 * 179.97438 * 11 10 9 13 13 O 1.21616 * 119.99956 * 0.02562 * 12 11 10 14 14 C 1.47100 * 120.00082 * 180.02562 * 12 11 10 15 15 C 1.32610 * 124.62105 * 180.02562 * 14 12 11 16 16 C 1.51119 * 110.75876 * 179.73707 * 15 14 12 17 17 C 1.54581 * 104.83726 * 16.84375 * 16 15 14 18 18 C 1.51116 * 124.61935 * 0.16857 * 14 12 11 19 19 H 0.96997 * 119.99703 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46735 * 60.00272 * 9 7 2 21 21 H 1.08998 * 109.47028 * 300.00760 * 9 7 2 22 22 H 1.09001 * 109.47175 * 60.00326 * 10 9 7 23 23 H 1.09000 * 109.47128 * 300.00609 * 10 9 7 24 24 H 0.96998 * 120.00201 * 0.02562 * 11 10 9 25 25 H 1.08002 * 124.62322 * 0.02562 * 15 14 12 26 26 H 1.09003 * 110.36233 * 135.68401 * 16 15 14 27 27 H 1.08999 * 110.36538 * 258.00007 * 16 15 14 28 28 H 1.09003 * 110.98246 * 93.07271 * 17 16 15 29 29 H 1.08999 * 110.97876 * 216.86735 * 17 16 15 30 30 H 1.08999 * 110.50363 * 44.70466 * 18 14 12 31 31 H 1.08999 * 110.26216 * 282.46911 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0981 -0.0018 13 8 3.4026 -6.0981 -0.0014 14 6 1.4510 -7.3720 -0.0030 15 6 2.0193 -8.5701 -0.0032 16 6 0.9722 -9.6597 0.0020 17 6 -0.3348 -8.9547 -0.4276 18 6 -0.0553 -7.4936 -0.0072 19 1 -0.4849 0.8400 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8718 -3.6045 0.8895 23 1 2.8719 -3.6044 -0.8905 24 1 0.5427 -4.9308 -0.0019 25 1 3.0853 -8.7436 -0.0021 26 1 1.2341 -10.4408 -0.7117 27 1 0.8659 -10.0789 1.0025 28 1 -0.4826 -9.0294 -1.5049 29 1 -1.1916 -9.3589 0.1115 30 1 -0.4922 -6.8016 -0.7272 31 1 -0.4522 -7.3032 0.9899 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393547230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:42 Heat of formation + Delta-G solvation = -43.969174 kcal Electronic energy + Delta-G solvation = -13078.466889 eV Core-core repulsion = 10745.151611 eV Total energy + Delta-G solvation = -2333.315277 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.64387 -37.60048 -34.83769 -32.83286 -30.17267 -29.06504 -28.22244 -24.82890 -22.04156 -21.14688 -20.48989 -18.42879 -17.02184 -16.39279 -15.75606 -15.10551 -14.66032 -14.53117 -13.85861 -13.07616 -12.82882 -12.68114 -12.31138 -12.01070 -11.70275 -11.35808 -11.30157 -11.15236 -11.04376 -10.61830 -10.33150 -9.80706 -9.46904 -9.18701 -8.96354 -8.51474 -8.31918 -6.09011 -4.11663 1.51738 3.28874 3.36338 3.41535 3.63235 3.76927 4.41795 4.45285 4.56154 4.85789 5.09906 5.23537 5.28198 5.53277 5.57893 5.70503 5.71025 5.83854 6.03913 6.24490 6.36392 6.45958 6.56138 6.75235 6.94622 7.52989 7.62408 7.89597 8.06262 8.28876 8.68824 8.94642 9.53215 11.02744 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.070672 B = 0.005411 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.098909 B = 5173.556645 C = 5527.134455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.716 5.716 12 C 0.554 3.446 13 O -0.554 6.554 14 C -0.184 4.184 15 C -0.089 4.089 16 C -0.105 4.105 17 C -0.123 4.123 18 C -0.094 4.094 19 H 0.261 0.739 20 H 0.023 0.977 21 H 0.022 0.978 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.398 0.602 25 H 0.136 0.864 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 -16.259 -0.117 16.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.002 4.002 11 N -0.365 5.365 12 C 0.341 3.659 13 O -0.435 6.435 14 C -0.187 4.187 15 C -0.109 4.109 16 C -0.142 4.142 17 C -0.160 4.160 18 C -0.131 4.131 19 H 0.071 0.929 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.232 0.768 25 H 0.154 0.846 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.584 -16.087 -0.117 16.165 hybrid contribution -0.053 1.029 0.022 1.031 sum -1.637 -15.058 -0.095 15.147 Atomic orbital electron populations 1.69967 1.06101 1.26754 1.50526 1.24998 0.94891 0.99423 0.94988 0.86454 0.80180 0.83312 0.77609 1.19570 1.20932 1.20929 1.21098 0.93302 0.90372 1.51165 0.92175 1.19334 0.94221 0.91153 0.97863 1.21742 0.96088 0.81504 1.00847 1.46252 1.10544 1.06487 1.73167 1.18017 0.87109 0.83783 0.76999 1.90754 1.13581 1.87883 1.51234 1.22001 0.96318 0.93878 1.06473 1.23969 0.99857 0.93503 0.93558 1.21453 0.93418 0.97204 1.02091 1.22425 0.97298 0.94741 1.01566 1.21277 0.91972 0.97553 1.02342 0.92907 0.95912 0.95919 0.92491 0.92497 0.76819 0.84632 0.90513 0.89917 0.90873 0.90631 0.90529 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.66 5.61 -4.04 -0.02 2.63 16 11 N -0.72 -13.28 5.55 -61.49 -0.34 -13.62 16 12 C 0.55 10.23 7.79 -12.67 -0.10 10.13 16 13 O -0.55 -12.24 16.77 5.26 0.09 -12.15 16 14 C -0.18 -2.59 6.10 -102.73 -0.63 -3.21 16 15 C -0.09 -1.09 10.43 -36.00 -0.38 -1.46 16 16 C -0.10 -0.91 6.80 -26.85 -0.18 -1.09 16 17 C -0.12 -1.05 7.16 -25.07 -0.18 -1.23 16 18 C -0.09 -1.02 6.01 -26.85 -0.16 -1.18 16 19 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 20 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 23 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.40 6.44 7.49 -40.82 -0.31 6.13 16 25 H 0.14 1.68 8.03 -52.49 -0.42 1.26 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 268.72 15.07 4.05 4.05 Total: -1.00 -31.84 268.72 -7.17 -39.01 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -4.48 Total: 0.41 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.20 Total: -8.63 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.40 Total: -39.17 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.84 -7.17 -39.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393547230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.963 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds