Wall clock time and date at job start Thu Apr 9 2020 11:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00371 * 2 1 4 4 H 1.48498 * 109.47377 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47064 * 300.00223 * 3 2 1 6 6 H 1.48499 * 109.47185 * 59.99786 * 3 2 1 7 7 C 1.37880 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99713 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00166 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47311 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47201 * 180.02562 * 10 9 7 12 12 C 1.34777 * 120.00046 * 179.97438 * 11 10 9 13 13 O 1.21616 * 119.99956 * 0.02562 * 12 11 10 14 14 C 1.47100 * 120.00082 * 180.02562 * 12 11 10 15 15 C 1.32610 * 124.62105 * 180.02562 * 14 12 11 16 16 C 1.51119 * 110.75876 * 179.73707 * 15 14 12 17 17 C 1.54581 * 104.83726 * 16.84375 * 16 15 14 18 18 C 1.51116 * 124.61935 * 0.16857 * 14 12 11 19 19 H 0.96997 * 119.99703 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46735 * 60.00272 * 9 7 2 21 21 H 1.08998 * 109.47028 * 300.00760 * 9 7 2 22 22 H 1.09001 * 109.47175 * 60.00326 * 10 9 7 23 23 H 1.09000 * 109.47128 * 300.00609 * 10 9 7 24 24 H 0.96998 * 120.00201 * 0.02562 * 11 10 9 25 25 H 1.08002 * 124.62322 * 0.02562 * 15 14 12 26 26 H 1.09003 * 110.36233 * 135.68401 * 16 15 14 27 27 H 1.08999 * 110.36538 * 258.00007 * 16 15 14 28 28 H 1.09003 * 110.98246 * 93.07271 * 17 16 15 29 29 H 1.08999 * 110.97876 * 216.86735 * 17 16 15 30 30 H 1.08999 * 110.50363 * 44.70466 * 18 14 12 31 31 H 1.08999 * 110.26216 * 282.46911 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0981 -0.0018 13 8 3.4026 -6.0981 -0.0014 14 6 1.4510 -7.3720 -0.0030 15 6 2.0193 -8.5701 -0.0032 16 6 0.9722 -9.6597 0.0020 17 6 -0.3348 -8.9547 -0.4276 18 6 -0.0553 -7.4936 -0.0072 19 1 -0.4849 0.8400 -0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8718 -3.6045 0.8895 23 1 2.8719 -3.6044 -0.8905 24 1 0.5427 -4.9308 -0.0019 25 1 3.0853 -8.7436 -0.0021 26 1 1.2341 -10.4408 -0.7117 27 1 0.8659 -10.0789 1.0025 28 1 -0.4826 -9.0294 -1.5049 29 1 -1.1916 -9.3589 0.1115 30 1 -0.4922 -6.8016 -0.7272 31 1 -0.4522 -7.3032 0.9899 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393547230.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:42 Heat of formation + Delta-G solvation = -64.864022 kcal Electronic energy + Delta-G solvation = -13079.372957 eV Core-core repulsion = 10745.151611 eV Total energy + Delta-G solvation = -2334.221346 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.97658 -38.68487 -36.63338 -34.84806 -31.87969 -30.16314 -29.19948 -26.75210 -23.58164 -22.67280 -21.53488 -19.75811 -18.54746 -18.09482 -16.87314 -16.62760 -16.50225 -16.04958 -15.31302 -14.80324 -14.34701 -13.78455 -13.57610 -13.25046 -12.99108 -12.94415 -12.58320 -12.52261 -12.29490 -12.03847 -11.98093 -11.69358 -11.47021 -10.93796 -10.62770 -10.16962 -9.79994 -8.25811 -6.36612 0.38806 1.40546 1.41307 1.54786 2.26585 2.26977 2.46031 3.08938 3.55554 3.66933 4.11065 4.23504 4.32691 4.44100 4.44816 4.79690 4.82261 4.83625 4.92569 5.00095 5.19822 5.24588 5.36848 5.40482 5.48326 5.54093 5.55341 5.76279 6.13677 6.59958 6.76349 7.21436 7.32933 8.86467 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.070672 B = 0.005411 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.098909 B = 5173.556645 C = 5527.134455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.712 5.712 12 C 0.550 3.450 13 O -0.599 6.599 14 C -0.216 4.216 15 C -0.068 4.068 16 C -0.100 4.100 17 C -0.116 4.116 18 C -0.093 4.093 19 H 0.266 0.734 20 H 0.009 0.991 21 H 0.009 0.991 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.410 0.590 25 H 0.129 0.871 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 -17.419 -0.098 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.361 5.361 12 C 0.340 3.660 13 O -0.482 6.482 14 C -0.219 4.219 15 C -0.088 4.088 16 C -0.137 4.137 17 C -0.153 4.153 18 C -0.130 4.130 19 H 0.075 0.925 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.246 0.754 25 H 0.146 0.854 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.126 -17.267 -0.098 17.398 hybrid contribution 0.130 1.309 0.019 1.315 sum -1.996 -15.958 -0.079 16.083 Atomic orbital electron populations 1.70064 1.07561 1.28016 1.50950 1.25878 0.95810 1.03120 0.94280 0.85367 0.78901 0.78618 0.77980 1.19034 1.20105 1.20093 1.21486 0.93575 0.91898 1.51681 0.92357 1.19138 0.94181 0.91726 0.96407 1.21264 0.95165 0.82270 0.99808 1.46072 1.11053 1.05588 1.73402 1.18742 0.86837 0.84932 0.75456 1.90718 1.15598 1.88579 1.53336 1.21913 0.98175 0.91949 1.09888 1.24384 1.00573 0.94182 0.89686 1.21553 0.91993 0.96294 1.03832 1.22457 0.97954 0.92675 1.02264 1.21325 0.89388 0.99485 1.02791 0.92464 0.97247 0.97249 0.93538 0.93562 0.75400 0.85364 0.88351 0.87937 0.90344 0.88342 0.90792 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.72 13.29 21.45 0.28 -54.44 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.55 -31.24 9.11 25.60 0.23 -31.00 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.14 6.31 5.61 86.38 0.48 6.79 16 11 N -0.71 -26.97 5.55 -466.72 -2.59 -29.56 16 12 C 0.55 20.64 7.79 86.57 0.67 21.32 16 13 O -0.60 -27.17 16.77 -4.08 -0.07 -27.24 16 14 C -0.22 -5.91 6.10 -18.56 -0.11 -6.02 16 15 C -0.07 -1.54 10.43 24.66 0.26 -1.29 16 16 C -0.10 -1.37 6.80 30.52 0.21 -1.17 16 17 C -0.12 -1.57 7.16 31.67 0.23 -1.34 16 18 C -0.09 -1.84 6.01 30.52 0.18 -1.65 16 19 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 20 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 21 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 22 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.41 13.45 7.49 -92.71 -0.69 12.76 16 25 H 0.13 3.05 8.03 -2.91 -0.02 3.02 16 26 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.47 7.85 -2.39 -0.02 1.45 16 31 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -68.85 268.72 2.84 -66.01 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.42 Total: 11.28 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 2.77 Total: -12.11 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -2.30 Total: -84.00 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.07 Total: -27.24 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -68.85 2.84 -66.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393547230.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.150 kcal (2) G-P(sol) polarization free energy of solvation -68.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds