Wall clock time and date at job start Thu Apr 9 2020 11:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50711 * 119.99939 * 2 1 4 4 C 1.53002 * 109.46980 * 124.99895 * 3 2 1 5 5 C 1.50699 * 109.46755 * 180.02562 * 4 3 2 6 6 O 1.21289 * 120.00254 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99608 * 179.97438 * 5 4 3 8 8 C 1.37097 * 120.00053 * 179.97438 * 7 5 4 9 9 H 1.08000 * 120.00393 * 224.29294 * 8 7 5 10 10 C 1.38952 * 119.99950 * 44.28576 * 8 7 5 11 11 N 1.31413 * 119.99710 * 18.21827 * 10 8 7 12 12 Si 1.86799 * 120.00260 * 198.22016 * 10 8 7 13 13 H 1.48498 * 109.46991 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47309 * 120.00075 * 12 10 8 15 15 H 1.48501 * 109.46749 * 240.00209 * 12 10 8 16 16 C 1.46503 * 120.00101 * 0.02562 * 7 5 4 17 17 C 1.53004 * 117.49694 * 183.22513 * 16 7 5 18 18 C 1.52998 * 117.49727 * 114.60208 * 16 7 5 19 19 H 1.07993 * 120.00376 * 0.02562 * 1 2 3 20 20 H 1.08006 * 119.99943 * 179.97438 * 1 2 3 21 21 H 1.08003 * 120.00364 * 179.97438 * 2 1 3 22 22 H 1.08993 * 109.46709 * 4.99639 * 3 2 1 23 23 H 1.08998 * 109.46755 * 244.99819 * 3 2 1 24 24 H 1.09000 * 109.46857 * 300.00401 * 4 3 2 25 25 H 1.09001 * 109.47031 * 60.00165 * 4 3 2 26 26 H 0.97001 * 120.00005 * 174.92946 * 11 10 8 27 27 H 1.09000 * 115.54764 * 328.92624 * 16 7 5 28 28 H 1.08995 * 117.49957 * 359.97438 * 17 16 7 29 29 H 1.08997 * 117.50055 * 145.02261 * 17 16 7 30 30 H 1.09010 * 117.49523 * 214.97334 * 18 16 7 31 31 H 1.08995 * 117.50657 * 359.97307 * 18 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.7880 2.6385 1.1820 6 8 3.5695 3.4650 0.3215 7 7 4.7043 2.8876 2.1385 8 6 5.3897 4.0750 2.1386 9 1 6.4555 4.0832 2.3128 10 6 4.7132 5.2678 1.9142 11 7 3.4079 5.3196 2.0569 12 14 5.6591 6.7975 1.4098 13 1 7.1064 6.4772 1.3195 14 1 5.1721 7.2673 0.0879 15 1 5.4510 7.8642 2.4218 16 6 4.9686 1.8892 3.1775 17 6 5.9644 2.2614 4.2779 18 6 6.3566 1.2461 3.2025 19 1 -0.5400 0.9352 -0.0004 20 1 -0.5400 -0.9354 -0.0004 21 1 1.8500 -0.9353 0.0004 22 1 1.3585 2.1316 0.0895 23 1 2.6213 1.4026 -0.9314 24 1 2.4772 1.2356 2.1130 25 1 3.7399 0.5066 1.0921 26 1 2.9441 6.1674 1.9726 27 1 4.1196 1.2652 3.4566 28 1 6.4232 3.2488 4.2285 29 1 5.7707 1.8822 5.2813 30 1 6.4209 0.1990 3.4985 31 1 7.0731 1.5655 2.4457 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393713639.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:45 Heat of formation + Delta-G solvation = 13.966265 kcal Electronic energy + Delta-G solvation = -13879.336853 eV Core-core repulsion = 11548.533845 eV Total energy + Delta-G solvation = -2330.803008 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.57042 -36.22500 -34.77596 -32.73024 -30.98485 -29.78684 -25.44087 -23.15374 -21.65836 -21.04926 -19.50547 -18.92062 -16.29396 -15.99246 -15.07439 -14.74361 -14.30238 -13.97145 -13.49265 -13.13661 -12.47016 -12.33071 -11.68409 -11.37499 -11.09002 -10.87437 -10.83547 -10.59489 -10.57330 -10.29558 -10.09212 -9.92674 -9.69964 -9.05738 -8.65852 -7.92304 -6.96626 -6.06561 -3.81641 2.54898 3.31646 3.41291 3.43378 4.19528 4.31799 4.82271 4.88895 5.22813 5.34136 5.46772 5.62350 5.77172 5.77779 5.86474 5.90995 6.07866 6.21751 6.24392 6.29566 6.51936 6.59727 6.73923 6.81589 6.93891 6.96556 7.11319 7.66448 8.32891 9.12611 9.23031 9.72985 10.37371 11.02840 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027193 B = 0.011306 C = 0.008544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.431508 B = 2475.878650 C = 3276.547523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C -0.077 4.077 4 C -0.127 4.127 5 C 0.483 3.517 6 O -0.535 6.535 7 N -0.432 5.432 8 C -0.349 4.349 9 H 0.076 0.924 10 C 0.073 3.927 11 N -0.835 5.835 12 Si 0.911 3.089 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.286 1.286 16 C 0.077 3.923 17 C -0.175 4.175 18 C -0.209 4.209 19 H 0.095 0.905 20 H 0.091 0.909 21 H 0.104 0.896 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.263 0.737 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 -8.860 1.284 8.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.160 4.160 3 C -0.115 4.115 4 C -0.168 4.168 5 C 0.270 3.730 6 O -0.413 6.413 7 N -0.153 5.153 8 C -0.475 4.475 9 H 0.094 0.906 10 C -0.138 4.138 11 N -0.468 5.468 12 Si 0.739 3.261 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.212 1.212 16 C -0.029 4.029 17 C -0.213 4.213 18 C -0.248 4.248 19 H 0.114 0.886 20 H 0.109 0.891 21 H 0.122 0.878 22 H 0.091 0.909 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.743 -8.295 0.747 8.361 hybrid contribution 0.364 0.665 0.019 0.758 sum -0.379 -7.630 0.765 7.678 Atomic orbital electron populations 1.23788 0.96057 1.01370 1.03306 1.23130 0.96040 0.98815 0.98057 1.20479 0.98060 0.94244 0.98702 1.21539 0.98204 0.98022 0.99011 1.19869 0.82947 0.87612 0.82535 1.90515 1.65152 1.47758 1.37859 1.42818 1.37584 1.14088 1.20820 1.18877 0.91541 0.82630 1.54496 0.90626 1.25246 0.94996 0.98618 0.94893 1.69837 1.08008 1.25874 1.43100 0.86167 0.79780 0.81708 0.78479 1.19621 1.20686 1.21230 1.21683 0.91462 0.95683 0.94092 1.23057 1.04443 1.00672 0.93111 1.23311 1.01433 0.97017 1.03020 0.88648 0.89090 0.87835 0.90916 0.90717 0.90904 0.90893 0.92741 0.88031 0.87546 0.89860 0.89865 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.79 14.32 29.02 0.42 -2.37 16 2 C -0.14 -2.07 9.52 -36.02 -0.34 -2.41 16 3 C -0.08 -1.41 4.95 -27.88 -0.14 -1.55 16 4 C -0.13 -2.49 4.30 -27.88 -0.12 -2.61 16 5 C 0.48 12.44 6.97 -10.99 -0.08 12.36 16 6 O -0.53 -15.97 13.74 5.55 0.08 -15.90 16 7 N -0.43 -11.02 2.83 -107.73 -0.31 -11.32 16 8 C -0.35 -9.69 7.92 -14.93 -0.12 -9.81 16 9 H 0.08 2.04 7.26 -52.49 -0.38 1.66 16 10 C 0.07 2.08 4.38 -17.47 -0.08 2.01 16 11 N -0.83 -25.18 11.74 55.50 0.65 -24.52 16 12 Si 0.91 22.28 29.59 -169.99 -5.03 17.25 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C 0.08 1.57 5.87 -67.93 -0.40 1.17 16 17 C -0.18 -3.22 9.80 -26.73 -0.26 -3.48 16 18 C -0.21 -3.62 10.36 -26.73 -0.28 -3.90 16 19 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 20 H 0.09 1.01 8.06 -52.48 -0.42 0.59 16 21 H 0.10 1.31 8.06 -52.48 -0.42 0.89 16 22 H 0.07 1.47 7.75 -51.93 -0.40 1.07 16 23 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 24 H 0.07 1.36 7.56 -51.93 -0.39 0.97 16 25 H 0.07 1.26 8.11 -51.93 -0.42 0.83 16 26 H 0.26 7.56 8.32 -40.82 -0.34 7.22 16 27 H 0.10 1.85 6.96 -51.93 -0.36 1.49 16 28 H 0.11 2.16 6.72 -51.93 -0.35 1.82 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 31 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 LS Contribution 266.77 15.07 4.02 4.02 Total: -1.00 -32.40 266.77 -6.37 -38.77 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -4.39 Total: 2.28 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -1.39 Total: -10.59 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.35 Total: -35.85 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.08 Total: -15.90 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.40 -6.37 -38.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393713639.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.741 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds