Wall clock time and date at job start Thu Apr 9 2020 11:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86808 * 119.99820 * 2 1 4 4 H 1.48496 * 109.47161 * 274.98495 * 3 2 1 5 5 H 1.48501 * 109.46998 * 34.98714 * 3 2 1 6 6 H 1.48496 * 109.46843 * 154.98322 * 3 2 1 7 7 C 1.40045 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00499 * 186.14983 * 7 2 1 9 9 C 1.46383 * 119.99758 * 6.15163 * 7 2 1 10 10 O 1.21689 * 119.99724 * 353.94014 * 9 7 2 11 11 N 1.34769 * 119.99775 * 173.93980 * 9 7 2 12 12 C 1.46500 * 120.00043 * 180.02562 * 11 9 7 13 13 C 1.53950 * 113.58193 * 105.75114 * 12 11 9 14 14 C 1.53078 * 86.72210 * 89.97967 * 13 12 11 15 15 C 1.52905 * 121.17319 * 150.58778 * 14 13 12 16 16 C 1.53950 * 86.78330 * 100.75341 * 15 14 13 17 17 C 1.52903 * 121.06848 * 259.12365 * 14 13 12 18 18 C 1.52908 * 88.07127 * 24.83536 * 14 13 12 19 19 H 0.97000 * 119.99855 * 0.02562 * 1 2 3 20 20 H 0.97005 * 120.00487 * 359.97438 * 11 9 7 21 21 H 1.09004 * 112.82312 * 334.66678 * 12 11 9 22 22 H 1.08996 * 113.66552 * 204.42200 * 13 12 11 23 23 H 1.09002 * 113.66213 * 335.48539 * 13 12 11 24 24 H 1.09004 * 113.66093 * 215.22025 * 15 14 13 25 25 H 1.08994 * 113.66556 * 346.27771 * 15 14 13 26 26 H 1.09004 * 113.57752 * 270.12953 * 16 15 14 27 27 H 1.08996 * 113.65089 * 139.34425 * 16 15 14 28 28 H 1.09004 * 113.66184 * 13.62909 * 17 14 13 29 29 H 1.08998 * 113.66643 * 144.68522 * 17 14 13 30 30 H 1.09003 * 113.66689 * 220.70060 * 18 14 13 31 31 H 1.09000 * 113.66330 * 89.63629 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6200 0.8028 6 1 3.5869 1.4121 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2155 0.0996 9 6 1.2814 -2.4768 -0.1370 10 8 0.0646 -2.4826 -0.1390 11 7 1.9612 -3.6340 -0.2603 12 6 1.2351 -4.8990 -0.3974 13 6 1.2645 -5.4744 -1.8250 14 6 2.5400 -6.2107 -1.4076 15 6 2.9231 -7.5500 -2.0379 16 6 3.9089 -6.7567 -2.9149 17 6 3.9199 -5.6874 -1.8074 18 6 2.0521 -6.1286 0.0393 19 1 -0.4850 0.8401 -0.0004 20 1 2.9312 -3.6293 -0.2591 21 1 0.2362 -4.8624 0.0374 22 1 0.4289 -6.1383 -2.0465 23 1 1.4256 -4.7218 -2.5969 24 1 3.4092 -8.2366 -1.3448 25 1 2.1143 -8.0160 -2.6006 26 1 3.4756 -6.4088 -3.8526 27 1 4.8697 -7.2530 -3.0514 28 1 3.9074 -4.6653 -2.1861 29 1 4.6862 -5.8504 -1.0496 30 1 2.8414 -5.8977 0.7548 31 1 1.4381 -6.9765 0.3426 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575495901.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:56 Heat of formation + Delta-G solvation = -6.442766 kcal Electronic energy + Delta-G solvation = -13779.047956 eV Core-core repulsion = 11447.359946 eV Total energy + Delta-G solvation = -2331.688010 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.19901 -36.97079 -34.56943 -32.44849 -30.87241 -26.31770 -25.52167 -25.39479 -23.65250 -20.79256 -19.27747 -17.60298 -17.14947 -15.44783 -15.22544 -14.98006 -14.74833 -13.98751 -13.21184 -12.79727 -12.45533 -12.36703 -12.07400 -11.60066 -11.39545 -11.24156 -11.00254 -10.81574 -10.57711 -10.44499 -10.19303 -9.95290 -9.75032 -9.31934 -8.82620 -7.58186 -7.43824 -6.17296 -4.61534 3.15094 3.22172 3.25768 4.12056 4.58678 4.65115 4.67920 4.85233 4.93492 5.03461 5.24801 5.41881 5.64830 5.79274 5.84499 5.95176 5.97396 6.07865 6.11733 6.16346 6.29139 6.36993 6.48301 6.58464 6.76329 6.83562 7.45808 7.97840 8.18434 8.38208 9.04785 9.58916 10.62748 10.81838 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.052505 B = 0.007647 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.152827 B = 3660.456458 C = 3966.028471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.746 5.746 12 C 0.143 3.857 13 C -0.133 4.133 14 C -0.101 4.101 15 C -0.129 4.129 16 C -0.139 4.139 17 C -0.119 4.119 18 C -0.140 4.140 19 H 0.268 0.732 20 H 0.380 0.620 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.246 -10.424 -3.113 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.464 6.464 11 N -0.399 5.399 12 C 0.035 3.965 13 C -0.172 4.172 14 C -0.101 4.101 15 C -0.167 4.167 16 C -0.176 4.176 17 C -0.156 4.156 18 C -0.179 4.179 19 H 0.079 0.921 20 H 0.212 0.788 21 H 0.105 0.895 22 H 0.097 0.903 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.156 -10.297 -3.095 12.389 hybrid contribution 0.952 0.736 -0.071 1.205 sum 7.107 -9.561 -3.166 12.327 Atomic orbital electron populations 1.70030 1.07074 1.27207 1.35379 1.25698 0.94578 1.00257 0.92617 0.86378 0.80253 0.81576 0.78657 1.19827 1.20453 1.18900 1.20888 0.94075 0.89638 1.53779 0.91455 1.18237 0.87170 0.82409 0.76201 1.90590 1.14119 1.86339 1.55302 1.45862 1.08290 1.05089 1.80660 1.21338 0.96770 0.84371 0.94056 1.23234 0.95286 0.98909 0.99802 1.22464 0.95181 0.95937 0.96497 1.22755 0.98979 0.96228 0.98720 1.22783 0.99145 0.97974 0.97694 1.22654 0.95742 0.99225 0.98018 1.23199 1.00150 0.98838 0.95673 0.92148 0.78824 0.89537 0.90304 0.91278 0.90486 0.91838 0.90477 0.92032 0.90911 0.90211 0.91445 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.32 11.85 55.55 0.66 -22.67 16 2 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 3 Si 0.91 20.33 29.56 -169.99 -5.03 15.31 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.55 -15.65 9.54 -35.63 -0.34 -15.99 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.56 16.04 7.74 -12.99 -0.10 15.94 16 10 O -0.58 -19.07 14.66 5.20 0.08 -19.00 16 11 N -0.75 -16.98 5.25 -54.25 -0.28 -17.26 16 12 C 0.14 2.81 4.29 -66.95 -0.29 2.52 16 13 C -0.13 -2.27 7.65 -26.20 -0.20 -2.47 16 14 C -0.10 -1.44 1.03 -154.63 -0.16 -1.60 16 15 C -0.13 -1.53 7.84 -26.28 -0.21 -1.74 16 16 C -0.14 -1.62 8.08 -25.75 -0.21 -1.82 16 17 C -0.12 -1.59 7.21 -26.29 -0.19 -1.78 16 18 C -0.14 -2.13 7.58 -26.28 -0.20 -2.33 16 19 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 20 H 0.38 7.75 8.07 -40.82 -0.33 7.42 16 21 H 0.09 1.93 7.50 -51.93 -0.39 1.54 16 22 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 24 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 262.23 15.07 3.95 3.95 Total: -1.00 -33.19 262.23 -7.10 -40.29 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.49 Total: 6.25 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -1.99 Total: -6.87 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.37 Total: -39.93 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.08 Total: -19.00 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.19 -7.10 -40.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575495901.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.844 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds