Wall clock time and date at job start Thu Apr 9 2020 11:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86808 * 119.99820 * 2 1 4 4 H 1.48496 * 109.47161 * 274.98495 * 3 2 1 5 5 H 1.48501 * 109.46998 * 34.98714 * 3 2 1 6 6 H 1.48496 * 109.46843 * 154.98322 * 3 2 1 7 7 C 1.40045 * 120.00344 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00499 * 186.14983 * 7 2 1 9 9 C 1.46383 * 119.99758 * 6.15163 * 7 2 1 10 10 O 1.21689 * 119.99724 * 353.94014 * 9 7 2 11 11 N 1.34769 * 119.99775 * 173.93980 * 9 7 2 12 12 C 1.46500 * 120.00043 * 180.02562 * 11 9 7 13 13 C 1.53950 * 113.58193 * 105.75114 * 12 11 9 14 14 C 1.53078 * 86.72210 * 89.97967 * 13 12 11 15 15 C 1.52905 * 121.17319 * 150.58778 * 14 13 12 16 16 C 1.53950 * 86.78330 * 100.75341 * 15 14 13 17 17 C 1.52903 * 121.06848 * 259.12365 * 14 13 12 18 18 C 1.52908 * 88.07127 * 24.83536 * 14 13 12 19 19 H 0.97000 * 119.99855 * 0.02562 * 1 2 3 20 20 H 0.97005 * 120.00487 * 359.97438 * 11 9 7 21 21 H 1.09004 * 112.82312 * 334.66678 * 12 11 9 22 22 H 1.08996 * 113.66552 * 204.42200 * 13 12 11 23 23 H 1.09002 * 113.66213 * 335.48539 * 13 12 11 24 24 H 1.09004 * 113.66093 * 215.22025 * 15 14 13 25 25 H 1.08994 * 113.66556 * 346.27771 * 15 14 13 26 26 H 1.09004 * 113.57752 * 270.12953 * 16 15 14 27 27 H 1.08996 * 113.65089 * 139.34425 * 16 15 14 28 28 H 1.09004 * 113.66184 * 13.62909 * 17 14 13 29 29 H 1.08998 * 113.66643 * 144.68522 * 17 14 13 30 30 H 1.09003 * 113.66689 * 220.70060 * 18 14 13 31 31 H 1.09000 * 113.66330 * 89.63629 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6200 0.8028 6 1 3.5869 1.4121 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2155 0.0996 9 6 1.2814 -2.4768 -0.1370 10 8 0.0646 -2.4826 -0.1390 11 7 1.9612 -3.6340 -0.2603 12 6 1.2351 -4.8990 -0.3974 13 6 1.2645 -5.4744 -1.8250 14 6 2.5400 -6.2107 -1.4076 15 6 2.9231 -7.5500 -2.0379 16 6 3.9089 -6.7567 -2.9149 17 6 3.9199 -5.6874 -1.8074 18 6 2.0521 -6.1286 0.0393 19 1 -0.4850 0.8401 -0.0004 20 1 2.9312 -3.6293 -0.2591 21 1 0.2362 -4.8624 0.0374 22 1 0.4289 -6.1383 -2.0465 23 1 1.4256 -4.7218 -2.5969 24 1 3.4092 -8.2366 -1.3448 25 1 2.1143 -8.0160 -2.6006 26 1 3.4756 -6.4088 -3.8526 27 1 4.8697 -7.2530 -3.0514 28 1 3.9074 -4.6653 -2.1861 29 1 4.6862 -5.8504 -1.0496 30 1 2.8414 -5.8977 0.7548 31 1 1.4381 -6.9765 0.3426 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575495901.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:56 Heat of formation + Delta-G solvation = -29.277568 kcal Electronic energy + Delta-G solvation = -13780.038147 eV Core-core repulsion = 11447.359946 eV Total energy + Delta-G solvation = -2332.678201 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.48854 -38.98163 -36.08271 -34.61101 -32.76491 -28.43940 -26.73555 -26.53121 -24.97035 -22.49708 -20.97315 -19.24667 -18.76503 -17.52729 -16.53783 -16.35439 -16.16369 -15.68980 -14.89181 -14.62890 -14.28159 -13.58778 -13.34401 -13.09725 -12.99147 -12.82449 -12.66300 -12.61125 -12.07334 -11.94590 -11.84577 -11.03051 -10.99150 -10.94373 -10.58127 -9.86771 -9.40032 -8.31103 -6.86751 1.38991 1.40458 1.56513 2.23837 2.45738 3.06914 3.50643 3.59231 3.64259 3.77177 3.95462 4.01597 4.15350 4.61900 4.70273 4.79679 4.85139 4.91576 4.94398 5.04469 5.09803 5.14577 5.14741 5.30539 5.33873 5.58356 5.63519 5.88353 6.24304 6.36747 6.85511 7.56578 8.49346 8.66827 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.052505 B = 0.007647 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.152827 B = 3660.456458 C = 3966.028471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.538 3.462 10 O -0.634 6.634 11 N -0.732 5.732 12 C 0.115 3.885 13 C -0.131 4.131 14 C -0.097 4.097 15 C -0.117 4.117 16 C -0.132 4.132 17 C -0.125 4.125 18 C -0.120 4.120 19 H 0.275 0.725 20 H 0.393 0.607 21 H 0.049 0.951 22 H 0.093 0.907 23 H 0.043 0.957 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.680 -11.214 -3.305 15.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.171 1.171 7 C -0.612 4.612 8 H 0.105 0.895 9 C 0.343 3.657 10 O -0.521 6.521 11 N -0.385 5.385 12 C 0.009 3.991 13 C -0.170 4.170 14 C -0.097 4.097 15 C -0.154 4.154 16 C -0.170 4.170 17 C -0.162 4.162 18 C -0.158 4.158 19 H 0.085 0.915 20 H 0.227 0.773 21 H 0.068 0.932 22 H 0.112 0.888 23 H 0.062 0.938 24 H 0.116 0.884 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.637 -11.147 -3.293 14.481 hybrid contribution 0.154 0.921 -0.008 0.934 sum 8.790 -10.226 -3.301 13.883 Atomic orbital electron populations 1.70198 1.09617 1.28970 1.36467 1.26999 0.95508 1.05020 0.91142 0.84995 0.78951 0.75059 0.79199 1.18785 1.19618 1.17052 1.21434 0.95174 0.90352 1.54264 0.89527 1.18638 0.86799 0.84326 0.75971 1.90540 1.16299 1.87496 1.57801 1.45479 1.08799 1.04938 1.79296 1.21642 0.95812 0.84874 0.96811 1.23178 0.98004 0.98815 0.96970 1.22394 0.94191 0.97917 0.95230 1.22744 0.99116 0.94892 0.98613 1.22758 1.00267 0.97100 0.96833 1.22760 0.95497 0.98682 0.99304 1.23121 0.99482 0.96509 0.96679 0.91542 0.77311 0.93229 0.88849 0.93778 0.88374 0.91136 0.91042 0.89835 0.93062 0.88519 0.90731 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.55 11.85 21.83 0.26 -51.29 16 2 C 0.03 1.61 5.49 85.30 0.47 2.08 16 3 Si 1.00 41.63 29.56 68.60 2.03 43.66 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 7 C -0.58 -33.50 9.54 24.83 0.24 -33.26 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.54 32.33 7.74 86.36 0.67 32.99 16 10 O -0.63 -43.95 14.66 -4.31 -0.06 -44.02 16 11 N -0.73 -34.27 5.25 -443.79 -2.33 -36.60 16 12 C 0.12 4.67 4.29 45.63 0.20 4.86 16 13 C -0.13 -4.47 7.65 30.94 0.24 -4.24 16 14 C -0.10 -2.58 1.03 -52.26 -0.05 -2.63 16 15 C -0.12 -2.32 7.84 30.88 0.24 -2.08 16 16 C -0.13 -2.67 8.08 31.23 0.25 -2.41 16 17 C -0.13 -3.07 7.21 30.88 0.22 -2.85 16 18 C -0.12 -3.44 7.58 30.89 0.23 -3.20 16 19 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 20 H 0.39 16.12 8.07 -92.70 -0.75 15.37 16 21 H 0.05 2.34 7.50 -2.38 -0.02 2.33 16 22 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 23 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.47 8.13 -2.38 -0.02 1.45 16 29 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -75.39 262.23 2.97 -72.42 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.37 Total: 26.57 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 2.70 Total: -10.74 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -2.07 Total: -87.89 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.06 Total: -44.02 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -75.39 2.97 -72.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575495901.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.147 kcal (2) G-P(sol) polarization free energy of solvation -75.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds