Wall clock time and date at job start Thu Apr 9 2020 11:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86800 * 120.00167 * 2 1 4 4 H 1.48504 * 109.47053 * 274.98743 * 3 2 1 5 5 H 1.48507 * 109.47150 * 34.98318 * 3 2 1 6 6 H 1.48500 * 109.47389 * 154.98187 * 3 2 1 7 7 C 1.40048 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00151 * 186.14448 * 7 2 1 9 9 C 1.46378 * 119.99607 * 6.15205 * 7 2 1 10 10 O 1.21687 * 120.00082 * 353.93784 * 9 7 2 11 11 N 1.34779 * 119.99483 * 173.93935 * 9 7 2 12 12 C 1.46505 * 119.99796 * 180.02562 * 11 9 7 13 13 H 1.09001 * 109.26346 * 34.99356 * 12 11 9 14 14 C 1.52872 * 109.26522 * 275.49649 * 12 11 9 15 15 C 1.53229 * 108.62928 * 184.84809 * 14 12 11 16 16 C 1.52870 * 108.56360 * 74.45991 * 15 14 12 17 17 C 1.52716 * 110.15445 * 305.48211 * 16 15 14 18 18 H 1.08994 * 114.91221 * 232.15863 * 17 16 15 19 19 C 1.53649 * 116.02964 * 90.20470 * 17 16 15 20 20 C 1.52061 * 120.51906 * 21.47502 * 17 16 15 21 21 H 1.09005 * 115.31226 * 211.01103 * 20 17 16 22 22 H 0.97001 * 119.99889 * 0.02562 * 1 2 3 23 23 H 0.96997 * 120.00166 * 359.97438 * 11 9 7 24 24 H 1.09006 * 109.61783 * 304.60841 * 14 12 11 25 25 H 1.08998 * 109.61900 * 65.14309 * 14 12 11 26 26 H 1.08992 * 109.62095 * 314.73640 * 15 14 12 27 27 H 1.09005 * 109.77532 * 194.27300 * 15 14 12 28 28 H 1.09006 * 109.35477 * 185.27338 * 16 15 14 29 29 H 1.09006 * 109.36025 * 65.69139 * 16 15 14 30 30 H 1.08993 * 117.53682 * 140.93557 * 19 17 16 31 31 H 1.09007 * 117.59470 * 355.66564 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0823 -1.2155 0.1007 9 6 1.2814 -2.4769 -0.1348 10 8 0.0645 -2.4827 -0.1367 11 7 1.9611 -3.6342 -0.2571 12 6 1.2350 -4.8994 -0.3931 13 1 0.3255 -4.7318 -0.9700 14 6 0.8627 -5.4191 0.9956 15 6 0.2131 -6.7985 0.8440 16 6 1.3054 -7.8181 0.5214 17 6 2.1005 -7.3680 -0.7023 18 1 2.1891 -8.1139 -1.4921 19 6 3.3319 -6.4928 -0.4218 20 6 2.1124 -5.9060 -1.1205 21 1 2.2164 -5.7283 -2.1909 22 1 -0.4850 0.8401 -0.0004 23 1 2.9311 -3.6295 -0.2559 24 1 1.7607 -5.5026 1.6079 25 1 0.1583 -4.7333 1.4663 26 1 -0.5149 -6.7731 0.0333 27 1 -0.2839 -7.0763 1.7736 28 1 0.8474 -8.7863 0.3185 29 1 1.9772 -7.9103 1.3749 30 1 4.2226 -6.6681 -1.0249 31 1 3.5139 -6.1934 0.6104 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575530431.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:58 Heat of formation + Delta-G solvation = -33.367946 kcal Electronic energy + Delta-G solvation = -13852.464927 eV Core-core repulsion = 11519.609354 eV Total energy + Delta-G solvation = -2332.855573 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.49348 -36.78503 -33.12208 -32.55708 -32.11615 -28.76926 -26.05645 -23.97888 -22.21085 -21.06908 -19.34080 -18.37118 -16.95217 -16.02816 -15.26836 -14.68931 -14.04695 -13.95977 -13.35284 -13.05085 -12.58906 -12.27648 -12.17574 -11.49266 -11.19840 -11.14795 -10.98909 -10.71296 -10.43351 -10.39669 -10.18843 -9.97148 -9.74324 -9.45422 -8.81483 -7.54263 -7.41215 -6.15310 -4.59300 3.15923 3.22999 3.26587 3.89382 4.15761 4.61843 4.80077 4.86056 5.07970 5.22113 5.35372 5.49320 5.57894 5.68748 5.79206 5.92062 5.97713 6.04264 6.08167 6.17552 6.35340 6.38615 6.50596 6.63799 6.82460 6.93389 7.47445 8.00699 8.19385 8.39840 9.06703 9.61906 10.64532 10.84062 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.062070 B = 0.007622 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.994312 B = 3672.923202 C = 3939.974991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.581 6.581 11 N -0.760 5.760 12 C 0.187 3.813 13 H 0.077 0.923 14 C -0.129 4.129 15 C -0.117 4.117 16 C -0.087 4.087 17 C -0.147 4.147 18 H 0.098 0.902 19 C -0.180 4.180 20 C -0.140 4.140 21 H 0.096 0.904 22 H 0.267 0.733 23 H 0.379 0.621 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.088 0.912 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 -11.233 -0.040 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.464 6.464 11 N -0.414 5.414 12 C 0.081 3.919 13 H 0.095 0.905 14 C -0.168 4.168 15 C -0.155 4.155 16 C -0.125 4.125 17 C -0.165 4.165 18 H 0.116 0.884 19 C -0.217 4.217 20 C -0.159 4.159 21 H 0.114 0.886 22 H 0.078 0.922 23 H 0.210 0.790 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.962 -11.110 -0.043 11.795 hybrid contribution 1.028 0.797 -0.091 1.304 sum 4.990 -10.313 -0.134 11.458 Atomic orbital electron populations 1.70032 1.07046 1.27141 1.35532 1.25696 0.94574 1.00230 0.92640 0.86389 0.80253 0.81630 0.78636 1.19845 1.20491 1.18930 1.20905 0.94078 0.89705 1.53752 0.91499 1.18209 0.87153 0.82408 0.76240 1.90588 1.14078 1.86479 1.55291 1.46182 1.08493 1.05382 1.81327 1.19734 0.94598 0.83506 0.94075 0.90456 1.22002 1.00540 0.95713 0.98515 1.21550 0.97584 0.95186 1.01200 1.21049 0.97168 0.98246 0.95999 1.22177 1.00894 0.93357 1.00108 0.88403 1.23062 0.91887 1.04819 1.01930 1.22115 1.00238 0.93784 0.99739 0.88557 0.92200 0.78952 0.92544 0.91095 0.91770 0.92301 0.92120 0.91997 0.89362 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.33 11.85 55.55 0.66 -22.68 16 2 C 0.09 2.49 5.49 -17.37 -0.10 2.40 16 3 Si 0.91 20.40 29.56 -169.99 -5.03 15.37 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.55 -15.70 9.53 -35.63 -0.34 -16.04 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 9 C 0.56 15.99 7.70 -12.98 -0.10 15.89 16 10 O -0.58 -18.93 14.70 5.20 0.08 -18.86 16 11 N -0.76 -17.33 5.05 -55.74 -0.28 -17.61 16 12 C 0.19 3.69 2.51 -68.47 -0.17 3.51 16 13 H 0.08 1.75 7.56 -51.93 -0.39 1.36 16 14 C -0.13 -2.34 5.25 -26.68 -0.14 -2.48 16 15 C -0.12 -1.70 5.93 -26.68 -0.16 -1.86 16 16 C -0.09 -1.08 5.83 -26.94 -0.16 -1.23 16 17 C -0.15 -1.89 6.19 -90.91 -0.56 -2.45 16 18 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 19 C -0.18 -2.38 9.66 -26.75 -0.26 -2.64 16 20 C -0.14 -2.18 5.45 -91.93 -0.50 -2.68 16 21 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 22 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 23 H 0.38 7.77 8.57 -40.82 -0.35 7.42 16 24 H 0.06 0.98 7.11 -51.93 -0.37 0.61 16 25 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 26 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.31 7.26 -51.93 -0.38 0.93 16 LS Contribution 257.63 15.07 3.88 3.88 Total: -1.00 -33.05 257.63 -7.58 -40.63 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.41 Total: 6.84 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.48 Total: -7.58 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.38 Total: -40.29 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.08 Total: -18.86 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.05 -7.58 -40.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575530431.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.263 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds