Wall clock time and date at job start Thu Apr 9 2020 11:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86800 * 120.00167 * 2 1 4 4 H 1.48504 * 109.47053 * 274.98743 * 3 2 1 5 5 H 1.48507 * 109.47150 * 34.98318 * 3 2 1 6 6 H 1.48500 * 109.47389 * 154.98187 * 3 2 1 7 7 C 1.40048 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00151 * 186.14448 * 7 2 1 9 9 C 1.46378 * 119.99607 * 6.15205 * 7 2 1 10 10 O 1.21687 * 120.00082 * 353.93784 * 9 7 2 11 11 N 1.34779 * 119.99483 * 173.93935 * 9 7 2 12 12 C 1.46505 * 119.99796 * 180.02562 * 11 9 7 13 13 H 1.09001 * 109.26346 * 34.99356 * 12 11 9 14 14 C 1.52872 * 109.26522 * 275.49649 * 12 11 9 15 15 C 1.53229 * 108.62928 * 184.84809 * 14 12 11 16 16 C 1.52870 * 108.56360 * 74.45991 * 15 14 12 17 17 C 1.52716 * 110.15445 * 305.48211 * 16 15 14 18 18 H 1.08994 * 114.91221 * 232.15863 * 17 16 15 19 19 C 1.53649 * 116.02964 * 90.20470 * 17 16 15 20 20 C 1.52061 * 120.51906 * 21.47502 * 17 16 15 21 21 H 1.09005 * 115.31226 * 211.01103 * 20 17 16 22 22 H 0.97001 * 119.99889 * 0.02562 * 1 2 3 23 23 H 0.96997 * 120.00166 * 359.97438 * 11 9 7 24 24 H 1.09006 * 109.61783 * 304.60841 * 14 12 11 25 25 H 1.08998 * 109.61900 * 65.14309 * 14 12 11 26 26 H 1.08992 * 109.62095 * 314.73640 * 15 14 12 27 27 H 1.09005 * 109.77532 * 194.27300 * 15 14 12 28 28 H 1.09006 * 109.35477 * 185.27338 * 16 15 14 29 29 H 1.09006 * 109.36025 * 65.69139 * 16 15 14 30 30 H 1.08993 * 117.53682 * 140.93557 * 19 17 16 31 31 H 1.09007 * 117.59470 * 355.66564 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4949 2.6200 0.8027 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 0.0005 8 1 3.0823 -1.2155 0.1007 9 6 1.2814 -2.4769 -0.1348 10 8 0.0645 -2.4827 -0.1367 11 7 1.9611 -3.6342 -0.2571 12 6 1.2350 -4.8994 -0.3931 13 1 0.3255 -4.7318 -0.9700 14 6 0.8627 -5.4191 0.9956 15 6 0.2131 -6.7985 0.8440 16 6 1.3054 -7.8181 0.5214 17 6 2.1005 -7.3680 -0.7023 18 1 2.1891 -8.1139 -1.4921 19 6 3.3319 -6.4928 -0.4218 20 6 2.1124 -5.9060 -1.1205 21 1 2.2164 -5.7283 -2.1909 22 1 -0.4850 0.8401 -0.0004 23 1 2.9311 -3.6295 -0.2559 24 1 1.7607 -5.5026 1.6079 25 1 0.1583 -4.7333 1.4663 26 1 -0.5149 -6.7731 0.0333 27 1 -0.2839 -7.0763 1.7736 28 1 0.8474 -8.7863 0.3185 29 1 1.9772 -7.9103 1.3749 30 1 4.2226 -6.6681 -1.0249 31 1 3.5139 -6.1934 0.6104 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575530431.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:57 Heat of formation + Delta-G solvation = -56.301570 kcal Electronic energy + Delta-G solvation = -13853.459404 eV Core-core repulsion = 11519.609354 eV Total energy + Delta-G solvation = -2333.850050 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.86851 -38.81019 -35.01682 -34.28972 -33.80328 -30.41004 -28.07903 -25.38752 -23.48157 -22.53467 -21.10215 -19.98478 -18.74951 -17.49839 -17.20224 -16.32448 -15.89798 -15.36676 -14.78340 -14.39029 -14.19901 -14.17415 -13.78480 -13.05991 -12.90438 -12.82671 -12.60371 -12.33294 -12.03766 -11.92809 -11.82983 -11.25609 -10.97932 -10.93660 -10.62483 -9.80089 -9.41136 -8.29657 -6.85385 1.38947 1.40544 1.56427 2.23836 2.47509 2.71439 3.29651 3.56547 3.75478 3.83809 4.03937 4.12247 4.21948 4.32630 4.49995 4.68971 4.72093 4.72524 4.95169 5.05785 5.13111 5.22532 5.31305 5.31698 5.35745 5.42574 5.48367 5.89443 6.25664 6.34151 6.86572 7.58898 8.50855 8.68207 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.062070 B = 0.007622 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.994312 B = 3672.923202 C = 3939.974991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.577 4.577 8 H 0.086 0.914 9 C 0.539 3.461 10 O -0.633 6.633 11 N -0.749 5.749 12 C 0.186 3.814 13 H 0.034 0.966 14 C -0.123 4.123 15 C -0.112 4.112 16 C -0.085 4.085 17 C -0.128 4.128 18 H 0.125 0.875 19 C -0.165 4.165 20 C -0.166 4.166 21 H 0.096 0.904 22 H 0.274 0.726 23 H 0.392 0.608 24 H 0.067 0.933 25 H 0.023 0.977 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.408 -12.341 -0.006 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.818 3.182 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.614 4.614 8 H 0.104 0.896 9 C 0.343 3.657 10 O -0.520 6.520 11 N -0.401 5.401 12 C 0.081 3.919 13 H 0.053 0.947 14 C -0.162 4.162 15 C -0.151 4.151 16 C -0.122 4.122 17 C -0.147 4.147 18 H 0.143 0.857 19 C -0.202 4.202 20 C -0.184 4.184 21 H 0.114 0.886 22 H 0.084 0.916 23 H 0.225 0.775 24 H 0.085 0.915 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.367 -12.275 -0.011 13.828 hybrid contribution 0.262 1.081 -0.096 1.117 sum 6.629 -11.194 -0.107 13.010 Atomic orbital electron populations 1.70203 1.09589 1.28896 1.36592 1.26997 0.95514 1.05009 0.91177 0.84996 0.78913 0.75086 0.79193 1.18752 1.19680 1.17122 1.21454 0.95169 0.90457 1.54291 0.89598 1.18604 0.86792 0.84298 0.76005 1.90540 1.16234 1.87620 1.57629 1.45902 1.09058 1.05373 1.79801 1.19794 0.93768 0.83365 0.94986 0.94747 1.21891 1.00061 0.97084 0.97134 1.21527 0.98285 0.93435 1.01810 1.21096 0.96451 0.98405 0.96216 1.22363 0.99916 0.91677 1.00702 0.85721 1.23159 0.92093 1.03306 1.01622 1.21866 1.02235 0.94983 0.99353 0.88628 0.91605 0.77453 0.91470 0.95786 0.92671 0.90763 0.89255 0.90724 0.87059 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.74 11.85 21.84 0.26 -51.48 16 2 C 0.03 1.59 5.49 85.30 0.47 2.06 16 3 Si 1.00 41.87 29.56 68.60 2.03 43.90 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 6 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 7 C -0.58 -33.76 9.53 24.83 0.24 -33.52 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.49 16 9 C 0.54 32.44 7.70 86.36 0.66 33.10 16 10 O -0.63 -43.87 14.70 -4.31 -0.06 -43.93 16 11 N -0.75 -35.30 5.05 -448.48 -2.27 -37.56 16 12 C 0.19 7.62 2.51 44.64 0.11 7.73 16 13 H 0.03 1.68 7.56 -2.39 -0.02 1.66 16 14 C -0.12 -4.59 5.25 30.63 0.16 -4.43 16 15 C -0.11 -3.16 5.93 30.63 0.18 -2.98 16 16 C -0.08 -1.78 5.83 30.46 0.18 -1.61 16 17 C -0.13 -2.86 6.19 -10.98 -0.07 -2.92 16 18 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 19 C -0.16 -3.84 9.66 30.58 0.30 -3.54 16 20 C -0.17 -4.98 5.45 -11.64 -0.06 -5.04 16 21 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 22 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 23 H 0.39 16.19 8.57 -92.71 -0.79 15.39 16 24 H 0.07 2.32 7.11 -2.38 -0.02 2.31 16 25 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.05 1.64 8.04 -2.39 -0.02 1.62 16 27 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.07 1.45 8.06 -2.38 -0.02 1.43 16 30 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.09 2.24 7.26 -2.38 -0.02 2.22 16 Total: -1.00 -76.22 257.63 2.45 -73.77 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.33 Total: 26.45 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 2.17 Total: -11.15 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -2.01 Total: -89.04 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -0.06 Total: -43.93 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -76.22 2.45 -73.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575530431.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.472 kcal (2) G-P(sol) polarization free energy of solvation -76.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds