Wall clock time and date at job start Thu Apr 9 2020 11:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48494 * 109.46968 * 270.00349 * 3 2 1 5 5 H 1.48498 * 109.46738 * 30.00187 * 3 2 1 6 6 H 1.48500 * 109.46999 * 150.00108 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.64066 * 304.58309 * 13 12 11 15 15 C 1.53028 * 109.64215 * 64.99841 * 13 12 11 16 16 C 1.50066 * 110.14701 * 169.12104 * 15 13 12 17 17 C 1.29446 * 124.07580 * 342.87303 * 16 15 13 18 18 C 1.50061 * 124.07653 * 0.48449 * 17 16 15 19 19 C 1.53033 * 110.14028 * 342.83823 * 18 17 16 20 20 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 22 22 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 23 23 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 24 24 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 25 25 H 1.00908 * 110.99583 * 303.94989 * 11 10 9 26 26 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 27 27 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 28 28 H 1.09003 * 109.35602 * 289.33078 * 15 13 12 29 29 H 1.08991 * 109.35830 * 49.05321 * 15 13 12 30 30 H 1.08005 * 117.96182 * 162.88847 * 16 15 13 31 31 H 1.08008 * 117.95906 * 180.46787 * 17 16 15 32 32 H 1.09002 * 109.35853 * 103.05606 * 18 17 16 33 33 H 1.08999 * 109.36312 * 222.78205 * 18 17 16 34 34 H 1.08996 * 109.65975 * 289.77469 * 19 18 17 35 35 H 1.09003 * 109.63667 * 169.13497 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6354 -7.3800 -0.0006 14 1 0.9468 -7.3874 0.8444 15 6 0.8477 -7.5002 -1.3070 16 6 0.2732 -8.8803 -1.4390 17 6 0.6751 -9.9019 -0.7532 18 6 1.7647 -9.8468 0.2772 19 6 2.5942 -8.5732 0.0994 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8906 25 1 0.8742 -4.9845 0.7801 26 1 3.0640 -6.0348 -0.8901 27 1 3.0628 -6.0349 0.8899 28 1 0.0384 -6.7701 -1.3094 29 1 1.5122 -7.3057 -2.1488 30 1 -0.5252 -9.0305 -2.1507 31 1 0.1963 -10.8530 -0.9336 32 1 1.3211 -9.8533 1.2728 33 1 2.4127 -10.7160 0.1647 34 1 3.1858 -8.6453 -0.8133 35 1 3.2534 -8.4425 0.9576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045630666.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:08 Heat of formation + Delta-G solvation = -15.960856 kcal Electronic energy + Delta-G solvation = -13337.823879 eV Core-core repulsion = 11141.556228 eV Total energy + Delta-G solvation = -2196.267651 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.78437 -35.71660 -33.11777 -31.51513 -30.70306 -28.75060 -25.22067 -23.56614 -22.58310 -20.94052 -20.26193 -17.85227 -16.28346 -16.04065 -15.05773 -14.55660 -14.30160 -14.24296 -13.44868 -12.99616 -12.97726 -12.61832 -12.27342 -12.07550 -11.78622 -11.59885 -11.02519 -10.89875 -10.64066 -10.53865 -10.30753 -10.15393 -9.89498 -9.31167 -9.11494 -8.95027 -8.33273 -7.75096 -5.97824 -4.00324 2.31650 3.33506 3.39416 3.42693 4.44497 4.62494 4.75462 4.80945 5.08962 5.30128 5.37049 5.38091 5.41796 5.56422 5.62330 5.82473 5.86591 5.92635 5.98193 6.06330 6.18312 6.35819 6.38969 6.45859 6.52369 6.69082 7.00192 7.01596 7.52848 7.76227 7.86156 8.00447 8.11663 8.46294 9.07067 9.63379 11.13663 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.080235 B = 0.004759 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.889304 B = 5881.601090 C = 6090.069028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.691 5.691 12 C 0.063 3.937 13 C -0.084 4.084 14 H 0.069 0.931 15 C -0.079 4.079 16 C -0.146 4.146 17 C -0.171 4.171 18 C -0.087 4.087 19 C -0.115 4.115 20 H 0.260 0.740 21 H 0.025 0.975 22 H 0.013 0.987 23 H 0.014 0.986 24 H 0.057 0.943 25 H 0.335 0.665 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 -17.542 -0.083 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.321 5.321 12 C -0.067 4.067 13 C -0.102 4.102 14 H 0.087 0.913 15 C -0.116 4.116 16 C -0.164 4.164 17 C -0.190 4.190 18 C -0.124 4.124 19 C -0.154 4.154 20 H 0.070 0.930 21 H 0.043 0.957 22 H 0.031 0.969 23 H 0.032 0.968 24 H 0.075 0.925 25 H 0.152 0.848 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.697 -17.423 -0.772 17.648 hybrid contribution 0.692 0.917 0.864 1.438 sum 3.388 -16.506 0.093 16.850 Atomic orbital electron populations 1.69969 1.06039 1.26565 1.50719 1.25000 0.94831 0.99196 0.95316 0.86592 0.79799 0.83474 0.78115 1.20627 1.21221 1.19933 1.21192 0.92981 0.91073 1.50805 0.92795 1.19069 0.94037 0.90462 0.97680 1.22147 0.96947 0.88627 0.98519 1.60592 1.19797 1.02098 1.49608 1.21989 0.94486 0.90286 0.99934 1.21210 0.96963 0.93672 0.98405 0.91280 1.20416 1.00089 0.93865 0.97254 1.22257 0.99464 0.95418 0.99247 1.21977 0.99537 0.98250 0.99192 1.20405 0.95982 0.98008 0.98050 1.21641 0.97630 0.94226 1.01854 0.93005 0.95659 0.96851 0.96809 0.92465 0.84833 0.91513 0.96015 0.89756 0.90974 0.88315 0.88562 0.91230 0.91538 0.91771 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.66 5.23 -27.89 -0.15 0.52 16 10 C 0.07 1.42 5.62 -3.82 -0.02 1.39 16 11 N -0.69 -12.44 6.17 -113.78 -0.70 -13.15 16 12 C 0.06 0.92 5.08 -3.83 -0.02 0.90 16 13 C -0.08 -1.05 2.39 -90.40 -0.22 -1.26 16 14 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 15 C -0.08 -1.01 5.21 -28.17 -0.15 -1.16 16 16 C -0.15 -1.66 9.80 -35.90 -0.35 -2.01 16 17 C -0.17 -1.79 9.80 -35.90 -0.35 -2.15 16 18 C -0.09 -0.85 6.12 -28.17 -0.17 -1.02 16 19 C -0.12 -1.23 5.31 -26.51 -0.14 -1.37 16 20 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 21 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.33 5.86 8.73 -39.29 -0.34 5.52 16 26 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 1.19 8.05 -51.93 -0.42 0.78 16 29 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.10 1.03 8.06 -52.48 -0.42 0.60 16 31 H 0.10 0.88 8.06 -52.48 -0.42 0.45 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 285.97 15.07 4.31 4.31 Total: -1.00 -29.82 285.97 -8.87 -38.68 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.22 Total: -0.27 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -1.98 Total: -19.92 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.03 Total: -39.64 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.82 -8.87 -38.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045630666.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.724 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds