Wall clock time and date at job start Thu Apr 9 2020 11:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86809 * 120.00052 * 2 1 4 4 H 1.48494 * 109.46968 * 270.00349 * 3 2 1 5 5 H 1.48498 * 109.46738 * 30.00187 * 3 2 1 6 6 H 1.48500 * 109.46999 * 150.00108 * 3 2 1 7 7 C 1.37879 * 120.00303 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00073 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47092 * 180.02562 * 9 7 2 11 11 N 1.46904 * 109.46950 * 180.02562 * 10 9 7 12 12 C 1.46899 * 111.00029 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 10 14 14 H 1.09001 * 109.64066 * 304.58309 * 13 12 11 15 15 C 1.53028 * 109.64215 * 64.99841 * 13 12 11 16 16 C 1.50066 * 110.14701 * 169.12104 * 15 13 12 17 17 C 1.29446 * 124.07580 * 342.87303 * 16 15 13 18 18 C 1.50061 * 124.07653 * 0.48449 * 17 16 15 19 19 C 1.53033 * 110.14028 * 342.83823 * 18 17 16 20 20 H 0.96998 * 120.00316 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.46937 * 59.99856 * 9 7 2 22 22 H 1.09004 * 109.47318 * 300.00373 * 9 7 2 23 23 H 1.08995 * 109.47319 * 60.00217 * 10 9 7 24 24 H 1.09003 * 109.47435 * 299.99542 * 10 9 7 25 25 H 1.00908 * 110.99583 * 303.94989 * 11 10 9 26 26 H 1.09002 * 109.47043 * 299.99792 * 12 11 10 27 27 H 1.09001 * 109.47354 * 59.99854 * 12 11 10 28 28 H 1.09003 * 109.35602 * 289.33078 * 15 13 12 29 29 H 1.08991 * 109.35830 * 49.05321 * 15 13 12 30 30 H 1.08005 * 117.96182 * 162.88847 * 16 15 13 31 31 H 1.08008 * 117.95906 * 180.46787 * 17 16 15 32 32 H 1.09002 * 109.35853 * 103.05606 * 18 17 16 33 33 H 1.08999 * 109.36312 * 222.78205 * 18 17 16 34 34 H 1.08996 * 109.65975 * 289.77469 * 19 18 17 35 35 H 1.09003 * 109.63667 * 169.13497 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0758 -0.0006 13 6 1.6354 -7.3800 -0.0006 14 1 0.9468 -7.3874 0.8444 15 6 0.8477 -7.5002 -1.3070 16 6 0.2732 -8.8803 -1.4390 17 6 0.6751 -9.9019 -0.7532 18 6 1.7647 -9.8468 0.2772 19 6 2.5942 -8.5732 0.0994 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8720 -3.6043 0.8894 24 1 2.8720 -3.6043 -0.8906 25 1 0.8742 -4.9845 0.7801 26 1 3.0640 -6.0348 -0.8901 27 1 3.0628 -6.0349 0.8899 28 1 0.0384 -6.7701 -1.3094 29 1 1.5122 -7.3057 -2.1488 30 1 -0.5252 -9.0305 -2.1507 31 1 0.1963 -10.8530 -0.9336 32 1 1.3211 -9.8533 1.2728 33 1 2.4127 -10.7160 0.1647 34 1 3.1858 -8.6453 -0.8133 35 1 3.2534 -8.4425 0.9576 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045630666.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:08 Heat of formation + Delta-G solvation = -33.678890 kcal Electronic energy + Delta-G solvation = -13338.592190 eV Core-core repulsion = 11141.556228 eV Total energy + Delta-G solvation = -2197.035962 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.76575 -37.22640 -35.09183 -32.94097 -31.61209 -30.45396 -26.85309 -25.04214 -23.65287 -22.49940 -21.66386 -18.76926 -18.48475 -17.05940 -16.53660 -16.38513 -15.59380 -15.39848 -14.67926 -14.49020 -14.36086 -13.83992 -13.67367 -13.18356 -13.17361 -13.00091 -12.77399 -12.51698 -12.42368 -11.93094 -11.59879 -11.54261 -11.35875 -11.08135 -10.90141 -10.56644 -9.80673 -9.24456 -8.20507 -6.32331 1.40429 1.42308 1.47149 1.53272 2.40639 3.12893 3.35095 3.80505 3.88576 4.05648 4.34819 4.40103 4.50768 4.56784 4.57907 4.64020 4.74842 4.86207 4.87424 4.94828 5.06615 5.07419 5.15988 5.27326 5.37134 5.45296 5.53065 5.67272 5.78686 5.84023 6.13761 6.14941 6.29434 6.55789 6.85052 7.37124 8.91765 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.080235 B = 0.004759 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.889304 B = 5881.601090 C = 6090.069028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.031 3.969 10 C 0.084 3.916 11 N -0.695 5.695 12 C 0.065 3.935 13 C -0.078 4.078 14 H 0.066 0.934 15 C -0.077 4.077 16 C -0.166 4.166 17 C -0.162 4.162 18 C -0.089 4.089 19 C -0.112 4.112 20 H 0.264 0.736 21 H -0.006 1.006 22 H -0.009 1.009 23 H 0.017 0.983 24 H 0.056 0.944 25 H 0.337 0.663 26 H 0.066 0.934 27 H 0.030 0.970 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 -18.412 0.291 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.045 4.045 11 N -0.326 5.326 12 C -0.064 4.064 13 C -0.097 4.097 14 H 0.084 0.916 15 C -0.114 4.114 16 C -0.184 4.184 17 C -0.180 4.180 18 C -0.126 4.126 19 C -0.150 4.150 20 H 0.073 0.927 21 H 0.012 0.988 22 H 0.009 0.991 23 H 0.036 0.964 24 H 0.075 0.925 25 H 0.154 0.846 26 H 0.084 0.916 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.041 -18.318 -0.398 18.763 hybrid contribution 0.241 1.125 0.751 1.374 sum 4.281 -17.193 0.352 17.721 Atomic orbital electron populations 1.70105 1.07871 1.27839 1.51401 1.25986 0.95767 1.03416 0.94550 0.85406 0.78623 0.78215 0.78540 1.19726 1.20626 1.18680 1.21627 0.93541 0.92303 1.51011 0.92168 1.18926 0.94323 0.92357 0.95014 1.21767 0.95560 0.88581 0.98586 1.60502 1.20356 1.01791 1.49963 1.22056 0.94243 0.89877 1.00204 1.21153 0.97092 0.93363 0.98066 0.91560 1.20327 0.99342 0.94522 0.97228 1.22231 1.00564 0.94888 1.00745 1.22243 0.99052 0.98524 0.98214 1.20477 0.95925 0.98094 0.98103 1.21624 0.97366 0.93630 1.02381 0.92712 0.98785 0.99066 0.96438 0.92543 0.84565 0.91583 0.95197 0.91964 0.91699 0.87747 0.86836 0.90504 0.89568 0.91707 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 2 C 0.00 0.04 5.46 84.66 0.46 0.51 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.55 -31.82 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.71 5.23 29.85 0.16 1.87 16 10 C 0.08 3.64 5.62 86.30 0.49 4.12 16 11 N -0.70 -25.22 6.17 -513.89 -3.17 -28.39 16 12 C 0.07 1.86 5.08 86.30 0.44 2.30 16 13 C -0.08 -1.87 2.39 -10.65 -0.03 -1.89 16 14 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 15 C -0.08 -1.96 5.21 29.66 0.15 -1.80 16 16 C -0.17 -3.61 9.80 27.03 0.27 -3.35 16 17 C -0.16 -3.02 9.80 27.03 0.27 -2.75 16 18 C -0.09 -1.47 6.12 29.66 0.18 -1.28 16 19 C -0.11 -2.12 5.31 30.74 0.16 -1.96 16 20 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 21 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 22 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 23 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.34 11.96 8.73 -89.69 -0.78 11.18 16 26 H 0.07 1.90 8.11 -2.39 -0.02 1.88 16 27 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16 29 H 0.06 1.70 8.08 -2.39 -0.02 1.68 16 30 H 0.10 2.10 8.06 -2.91 -0.02 2.07 16 31 H 0.11 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -63.74 285.97 2.17 -61.57 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.25 Total: 13.35 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 2.78 Total: -35.83 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -2.88 Total: -85.82 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.74 2.17 -61.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045630666.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.895 kcal (2) G-P(sol) polarization free energy of solvation -63.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds