Wall clock time and date at job start Thu Apr 9 2020 11:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36933 * 120.00275 * 2 1 4 4 H 1.08005 * 120.00472 * 203.04678 * 3 2 1 5 5 C 1.38819 * 120.00150 * 23.04600 * 3 2 1 6 6 N 1.31622 * 119.99532 * 12.93137 * 5 3 2 7 7 Si 1.86794 * 120.00412 * 192.92771 * 5 3 2 8 8 H 1.48502 * 109.47036 * 89.99884 * 7 5 3 9 9 H 1.48502 * 109.47411 * 210.00239 * 7 5 3 10 10 H 1.48507 * 109.47005 * 330.00115 * 7 5 3 11 11 C 1.46500 * 119.99789 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47243 * 90.00089 * 11 2 1 13 13 C 1.50698 * 109.47423 * 180.02562 * 12 11 2 14 14 C 1.29433 * 117.96401 * 94.73289 * 13 12 11 15 15 C 1.50064 * 124.07797 * 180.75222 * 14 13 12 16 16 C 1.53021 * 110.14886 * 342.87026 * 15 14 13 17 17 C 1.53392 * 108.43740 * 49.43193 * 16 15 14 18 18 C 1.50067 * 117.95853 * 274.99697 * 13 12 11 19 19 H 1.09001 * 109.47098 * 275.12659 * 1 2 3 20 20 H 1.09000 * 109.46985 * 35.11837 * 1 2 3 21 21 H 1.08990 * 109.47403 * 155.12126 * 1 2 3 22 22 H 0.97005 * 119.99664 * 180.02562 * 6 5 3 23 23 H 1.08998 * 109.47054 * 329.99625 * 11 2 1 24 24 H 1.09006 * 109.47030 * 209.99625 * 11 2 1 25 25 H 1.09005 * 109.47324 * 59.99435 * 12 11 2 26 26 H 1.08999 * 109.46854 * 300.00366 * 12 11 2 27 27 H 1.08002 * 117.96549 * 0.72899 * 14 13 12 28 28 H 1.09002 * 109.36100 * 222.66144 * 15 14 13 29 29 H 1.09002 * 109.35930 * 103.07828 * 15 14 13 30 30 H 1.09009 * 109.64045 * 289.75420 * 16 15 14 31 31 H 1.08998 * 109.64768 * 169.12199 * 16 15 14 32 32 H 1.09000 * 109.64619 * 172.88094 * 17 16 15 33 33 H 1.08999 * 109.64170 * 52.25584 * 17 16 15 34 34 H 1.08995 * 109.36517 * 282.79611 * 18 13 12 35 35 H 1.09001 * 109.35928 * 42.52071 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3160 4.0073 0.1457 8 1 1.7989 4.5534 -1.1348 9 1 1.9761 4.9363 1.2532 10 1 3.7910 3.8576 0.0602 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2053 -3.0152 -1.4439 14 6 2.5216 -4.1101 -1.5389 15 6 3.1279 -5.4829 -1.5365 16 6 4.6265 -5.3978 -1.8339 17 6 5.2437 -4.3351 -0.9160 18 6 4.7007 -2.9650 -1.3282 19 1 -0.3633 0.0918 1.0236 20 1 -0.3633 0.8406 -0.5912 21 1 -0.3633 -0.9322 -0.4323 22 1 -0.0152 3.0663 1.4745 23 1 1.6084 -2.0286 0.5130 24 1 3.1499 -1.1386 0.5133 25 1 3.0415 -0.9499 -1.9568 26 1 1.5000 -1.8398 -1.9571 27 1 1.4480 -4.0310 -1.6249 28 1 2.6425 -6.0936 -2.2979 29 1 2.9790 -5.9419 -0.5591 30 1 4.7778 -5.1146 -2.8757 31 1 5.0936 -6.3637 -1.6421 32 1 6.3286 -4.3458 -1.0206 33 1 4.9704 -4.5413 0.1188 34 1 5.1283 -2.6814 -2.2898 35 1 4.9804 -2.2268 -0.5766 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049805461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:10 Heat of formation + Delta-G solvation = 11.016069 kcal Electronic energy + Delta-G solvation = -13824.354263 eV Core-core repulsion = 11629.256420 eV Total energy + Delta-G solvation = -2195.097844 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.56112 -35.67515 -32.89862 -30.81631 -30.54924 -27.58002 -25.76857 -23.76386 -22.86556 -21.36656 -20.10806 -17.31633 -16.57306 -15.52843 -14.71801 -14.22982 -13.99005 -13.67568 -13.41222 -13.05606 -12.76142 -12.24533 -12.11252 -11.90921 -11.60559 -11.10390 -10.83200 -10.78760 -10.69682 -10.50020 -10.28790 -10.16492 -9.94342 -9.71206 -9.66943 -8.58500 -8.33027 -6.64790 -5.65750 -3.12375 2.61698 3.41685 3.47540 3.49091 4.55041 4.87340 4.90053 4.98746 5.41222 5.46067 5.50633 5.58274 5.67763 5.70199 5.81275 5.96150 5.97736 6.07221 6.10254 6.20253 6.32398 6.43338 6.45008 6.53002 6.80242 6.81852 6.99103 7.11397 7.43591 7.47146 7.79014 7.86176 8.47032 9.30735 9.94901 10.44547 11.38887 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.052869 B = 0.006692 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.484541 B = 4183.401741 C = 4549.031518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.604 5.604 3 C -0.252 4.252 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.161 3.839 12 C -0.111 4.111 13 C -0.100 4.100 14 C -0.182 4.182 15 C -0.083 4.083 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.085 4.085 19 H 0.030 0.970 20 H 0.039 0.961 21 H -0.004 1.004 22 H 0.251 0.749 23 H 0.034 0.966 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 -12.888 -5.012 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.327 5.327 3 C -0.382 4.382 4 H 0.085 0.915 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.033 3.967 12 C -0.151 4.151 13 C -0.100 4.100 14 C -0.200 4.200 15 C -0.120 4.120 16 C -0.157 4.157 17 C -0.157 4.157 18 C -0.122 4.122 19 H 0.048 0.952 20 H 0.058 0.942 21 H 0.015 0.985 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.063 0.937 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.168 -12.726 -4.911 14.970 hybrid contribution 0.215 1.034 -0.187 1.073 sum 6.383 -11.692 -5.098 14.263 Atomic orbital electron populations 1.20771 0.82813 0.95245 0.99363 1.43937 1.01834 1.00826 1.86094 1.19206 0.98220 0.85717 1.35055 0.91488 1.25029 0.97977 0.98503 0.98338 1.70079 1.19537 1.27051 1.38797 0.86258 0.78742 0.84224 0.77355 1.21558 1.21770 1.20505 1.20655 0.95849 0.87995 0.92162 1.21498 0.98596 0.93344 1.01645 1.21019 0.95060 0.95663 0.98288 1.21771 0.99302 0.93497 1.05477 1.20353 0.95064 0.95435 1.01196 1.21595 0.95674 0.98582 0.99835 1.21604 0.99348 0.95029 0.99696 1.20416 0.92749 0.97309 1.01706 0.95160 0.94233 0.98494 0.93838 0.94810 0.93686 0.91748 0.92450 0.88269 0.91865 0.91573 0.92025 0.92284 0.92108 0.91799 0.91259 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 8.98 59.85 0.54 4.74 16 2 N -0.60 -15.91 2.92 -181.12 -0.53 -16.44 16 3 C -0.25 -7.16 9.65 -15.06 -0.15 -7.31 16 4 H 0.07 1.85 7.86 -52.48 -0.41 1.44 16 5 C 0.00 -0.02 5.10 -17.43 -0.09 -0.10 16 6 N -0.91 -27.32 10.71 55.49 0.59 -26.73 16 7 Si 0.90 22.34 29.57 -169.99 -5.03 17.31 16 8 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.16 3.49 5.63 -4.04 -0.02 3.47 16 12 C -0.11 -2.07 5.55 -27.88 -0.15 -2.23 16 13 C -0.10 -1.55 5.09 -100.94 -0.51 -2.06 16 14 C -0.18 -2.62 9.37 -35.90 -0.34 -2.95 16 15 C -0.08 -0.97 6.11 -28.18 -0.17 -1.14 16 16 C -0.12 -1.28 6.01 -26.52 -0.16 -1.44 16 17 C -0.12 -1.37 6.01 -26.51 -0.16 -1.53 16 18 C -0.08 -1.16 5.80 -28.18 -0.16 -1.33 16 19 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 20 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 21 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 22 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 23 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 24 H 0.04 0.98 8.01 -51.93 -0.42 0.57 16 25 H 0.06 1.27 8.12 -51.93 -0.42 0.85 16 26 H 0.06 1.10 7.80 -51.93 -0.40 0.69 16 27 H 0.10 1.46 7.74 -52.49 -0.41 1.05 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.66 8.13 -51.92 -0.42 0.24 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.76 8.12 -51.93 -0.42 0.33 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 LS Contribution 281.52 15.07 4.24 4.24 Total: -1.00 -30.02 281.52 -8.27 -38.29 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -6.17 Total: -4.78 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -1.38 Total: -11.89 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.07 Total: -43.17 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.02 -8.27 -38.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049805461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.308 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds