Wall clock time and date at job start Thu Apr 9 2020 11:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36933 * 120.00275 * 2 1 4 4 H 1.08005 * 120.00472 * 203.04678 * 3 2 1 5 5 C 1.38819 * 120.00150 * 23.04600 * 3 2 1 6 6 N 1.31622 * 119.99532 * 12.93137 * 5 3 2 7 7 Si 1.86794 * 120.00412 * 192.92771 * 5 3 2 8 8 H 1.48502 * 109.47036 * 89.99884 * 7 5 3 9 9 H 1.48502 * 109.47411 * 210.00239 * 7 5 3 10 10 H 1.48507 * 109.47005 * 330.00115 * 7 5 3 11 11 C 1.46500 * 119.99789 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47243 * 90.00089 * 11 2 1 13 13 C 1.50698 * 109.47423 * 180.02562 * 12 11 2 14 14 C 1.29433 * 117.96401 * 94.73289 * 13 12 11 15 15 C 1.50064 * 124.07797 * 180.75222 * 14 13 12 16 16 C 1.53021 * 110.14886 * 342.87026 * 15 14 13 17 17 C 1.53392 * 108.43740 * 49.43193 * 16 15 14 18 18 C 1.50067 * 117.95853 * 274.99697 * 13 12 11 19 19 H 1.09001 * 109.47098 * 275.12659 * 1 2 3 20 20 H 1.09000 * 109.46985 * 35.11837 * 1 2 3 21 21 H 1.08990 * 109.47403 * 155.12126 * 1 2 3 22 22 H 0.97005 * 119.99664 * 180.02562 * 6 5 3 23 23 H 1.08998 * 109.47054 * 329.99625 * 11 2 1 24 24 H 1.09006 * 109.47030 * 209.99625 * 11 2 1 25 25 H 1.09005 * 109.47324 * 59.99435 * 12 11 2 26 26 H 1.08999 * 109.46854 * 300.00366 * 12 11 2 27 27 H 1.08002 * 117.96549 * 0.72899 * 14 13 12 28 28 H 1.09002 * 109.36100 * 222.66144 * 15 14 13 29 29 H 1.09002 * 109.35930 * 103.07828 * 15 14 13 30 30 H 1.09009 * 109.64045 * 289.75420 * 16 15 14 31 31 H 1.08998 * 109.64768 * 169.12199 * 16 15 14 32 32 H 1.09000 * 109.64619 * 172.88094 * 17 16 15 33 33 H 1.08999 * 109.64170 * 52.25584 * 17 16 15 34 34 H 1.08995 * 109.36517 * 282.79611 * 18 13 12 35 35 H 1.09001 * 109.35928 * 42.52071 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3160 4.0073 0.1457 8 1 1.7989 4.5534 -1.1348 9 1 1.9761 4.9363 1.2532 10 1 3.7910 3.8576 0.0602 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 6 3.2053 -3.0152 -1.4439 14 6 2.5216 -4.1101 -1.5389 15 6 3.1279 -5.4829 -1.5365 16 6 4.6265 -5.3978 -1.8339 17 6 5.2437 -4.3351 -0.9160 18 6 4.7007 -2.9650 -1.3282 19 1 -0.3633 0.0918 1.0236 20 1 -0.3633 0.8406 -0.5912 21 1 -0.3633 -0.9322 -0.4323 22 1 -0.0152 3.0663 1.4745 23 1 1.6084 -2.0286 0.5130 24 1 3.1499 -1.1386 0.5133 25 1 3.0415 -0.9499 -1.9568 26 1 1.5000 -1.8398 -1.9571 27 1 1.4480 -4.0310 -1.6249 28 1 2.6425 -6.0936 -2.2979 29 1 2.9790 -5.9419 -0.5591 30 1 4.7778 -5.1146 -2.8757 31 1 5.0936 -6.3637 -1.6421 32 1 6.3286 -4.3458 -1.0206 33 1 4.9704 -4.5413 0.1188 34 1 5.1283 -2.6814 -2.2898 35 1 4.9804 -2.2268 -0.5766 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049805461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:10 Heat of formation + Delta-G solvation = -4.554740 kcal Electronic energy + Delta-G solvation = -13825.029464 eV Core-core repulsion = 11629.256420 eV Total energy + Delta-G solvation = -2195.773044 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.69227 -37.55643 -34.46823 -32.66157 -31.56837 -29.15212 -27.91100 -25.37090 -23.97610 -22.76434 -21.71569 -18.74868 -18.35375 -17.04800 -16.38465 -15.70682 -15.30873 -15.26014 -14.70753 -14.56923 -14.43289 -13.51826 -13.40411 -13.32582 -12.94826 -12.81790 -12.70511 -12.61859 -12.37306 -12.12950 -11.90273 -11.65234 -11.53968 -11.19554 -10.96525 -10.65518 -9.62858 -8.75134 -7.83415 -5.33750 1.41462 1.45729 1.47098 1.55899 2.50311 3.29158 3.63615 3.85623 4.00274 4.11155 4.28153 4.48359 4.52970 4.59460 4.64882 4.76729 4.79890 4.81317 4.87117 5.01392 5.07855 5.11838 5.20891 5.22472 5.24906 5.41320 5.46457 5.51943 5.60232 5.66235 5.86138 6.26089 6.32216 7.13679 7.85602 8.30471 9.19629 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.052869 B = 0.006692 C = 0.006154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.484541 B = 4183.401741 C = 4549.031518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.623 5.623 3 C -0.264 4.264 4 H 0.069 0.931 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.971 3.029 8 H -0.285 1.285 9 H -0.293 1.293 10 H -0.267 1.267 11 C 0.161 3.839 12 C -0.094 4.094 13 C -0.119 4.119 14 C -0.168 4.168 15 C -0.085 4.085 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.085 4.085 19 H 0.005 0.995 20 H 0.014 0.986 21 H 0.028 0.972 22 H 0.249 0.751 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.570 -14.310 -5.775 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.346 5.346 3 C -0.394 4.394 4 H 0.087 0.913 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.799 3.201 8 H -0.212 1.212 9 H -0.219 1.219 10 H -0.192 1.192 11 C 0.036 3.964 12 C -0.134 4.134 13 C -0.120 4.120 14 C -0.187 4.187 15 C -0.122 4.122 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.122 4.122 19 H 0.023 0.977 20 H 0.033 0.967 21 H 0.046 0.954 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.467 -14.184 -5.689 17.009 hybrid contribution -0.212 1.383 0.047 1.400 sum 7.255 -12.801 -5.641 15.758 Atomic orbital electron populations 1.20520 0.82961 0.95730 0.97599 1.44215 1.02142 1.01897 1.86393 1.19532 0.98492 0.86848 1.34538 0.91283 1.25851 0.98710 1.02071 0.98436 1.70246 1.20950 1.27662 1.39972 0.85200 0.78458 0.79518 0.76893 1.21231 1.21930 1.19173 1.20778 0.95074 0.86351 0.94231 1.21193 0.98526 0.94847 0.98842 1.20900 0.96020 0.94266 1.00828 1.22039 0.99136 0.94755 1.02739 1.20441 0.95829 0.93588 1.02339 1.21606 0.94894 0.99353 0.99575 1.21602 1.00419 0.93746 0.99627 1.20416 0.91516 0.98613 1.01621 0.97665 0.96673 0.95357 0.94231 0.94160 0.94235 0.93302 0.93109 0.88857 0.90181 0.90612 0.91973 0.90021 0.90381 0.92177 0.90781 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.28 8.98 127.77 1.15 10.42 16 2 N -0.62 -33.18 2.92 -726.95 -2.12 -35.30 16 3 C -0.26 -15.13 9.65 84.04 0.81 -14.32 16 4 H 0.07 3.84 7.86 -2.91 -0.02 3.82 16 5 C -0.06 -3.25 5.10 84.86 0.43 -2.81 16 6 N -0.94 -57.66 10.71 21.65 0.23 -57.43 16 7 Si 0.97 46.23 29.57 68.60 2.03 48.26 16 8 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 9 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 11 C 0.16 7.02 5.63 86.38 0.49 7.51 16 12 C -0.09 -3.50 5.55 29.85 0.17 -3.34 16 13 C -0.12 -3.58 5.09 -15.09 -0.08 -3.65 16 14 C -0.17 -4.50 9.37 27.05 0.25 -4.24 16 15 C -0.09 -1.70 6.11 29.66 0.18 -1.52 16 16 C -0.12 -2.10 6.01 30.73 0.18 -1.91 16 17 C -0.12 -2.38 6.01 30.73 0.18 -2.19 16 18 C -0.08 -2.21 5.80 29.66 0.17 -2.03 16 19 H 0.01 0.29 7.34 -2.39 -0.02 0.27 16 20 H 0.01 0.82 7.34 -2.39 -0.02 0.81 16 21 H 0.03 1.26 8.03 -2.39 -0.02 1.25 16 22 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 23 H 0.04 1.68 8.07 -2.39 -0.02 1.66 16 24 H 0.04 1.74 8.01 -2.38 -0.02 1.72 16 25 H 0.05 1.94 8.12 -2.38 -0.02 1.92 16 26 H 0.05 1.92 7.80 -2.39 -0.02 1.90 16 27 H 0.09 2.58 7.74 -2.91 -0.02 2.56 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.13 8.13 -2.38 -0.02 1.11 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.72 8.11 -2.39 -0.02 1.70 16 Total: -1.00 -63.98 281.52 5.10 -58.88 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.02 Total: 3.68 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 3.94 Total: -18.09 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -1.89 Total: -92.73 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -63.98 5.10 -58.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049805461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.327 kcal (2) G-P(sol) polarization free energy of solvation -63.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds