Wall clock time and date at job start Thu Apr 9 2020 11:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00086 * 2 1 4 4 C 1.53001 * 109.46673 * 125.00397 * 3 2 1 5 5 N 1.46498 * 109.47012 * 179.97438 * 4 3 2 6 6 C 1.36933 * 120.00240 * 270.00255 * 5 4 3 7 7 H 1.07997 * 120.00637 * 142.01152 * 6 5 4 8 8 C 1.38820 * 119.99728 * 322.00793 * 6 5 4 9 9 N 1.31617 * 120.00002 * 156.08926 * 8 6 5 10 10 Si 1.86802 * 120.00010 * 336.09427 * 8 6 5 11 11 H 1.48501 * 109.47223 * 95.28632 * 10 8 6 12 12 H 1.48493 * 109.47135 * 215.29045 * 10 8 6 13 13 H 1.48501 * 109.46763 * 335.28879 * 10 8 6 14 14 C 1.46503 * 120.00018 * 89.99453 * 5 4 3 15 15 C 1.54266 * 110.03536 * 242.58109 * 14 5 4 16 16 C 1.54962 * 104.16081 * 217.13886 * 15 14 5 17 17 C 1.54889 * 102.77997 * 37.88795 * 16 15 14 18 18 C 1.53879 * 110.03019 * 125.36281 * 14 5 4 19 19 H 1.08003 * 119.99927 * 359.97438 * 1 2 3 20 20 H 1.08000 * 120.00218 * 179.97438 * 1 2 3 21 21 H 1.08002 * 119.99683 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.47050 * 5.00138 * 3 2 1 23 23 H 1.08999 * 109.46913 * 245.00061 * 3 2 1 24 24 H 1.08992 * 109.47630 * 59.99876 * 4 3 2 25 25 H 1.08999 * 109.47176 * 299.99502 * 4 3 2 26 26 H 0.96997 * 119.99896 * 180.02562 * 9 8 6 27 27 H 1.08997 * 110.01769 * 3.97470 * 14 5 4 28 28 H 1.08997 * 110.48506 * 335.78795 * 15 14 5 29 29 H 1.08999 * 110.48569 * 98.42558 * 15 14 5 30 30 H 1.09001 * 110.72050 * 279.57458 * 16 15 14 31 31 H 1.09003 * 110.92406 * 156.29988 * 16 15 14 32 32 H 1.08997 * 110.48998 * 203.40959 * 17 16 15 33 33 H 1.08999 * 110.59970 * 80.81665 * 17 16 15 34 34 H 1.08996 * 110.03206 * 238.57339 * 18 14 5 35 35 H 1.09004 * 110.03234 * 0.02562 * 18 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3329 1.1816 5 7 3.7681 2.6014 1.1813 6 6 4.9517 2.7080 0.5011 7 1 5.1906 3.6190 -0.0275 8 6 5.8446 1.6452 0.4909 9 7 6.7178 1.5285 -0.4870 10 14 5.8069 0.3804 1.8651 11 1 4.9795 -0.7799 1.4474 12 1 7.1896 -0.0765 2.1554 13 1 5.2213 0.9923 3.0849 14 6 3.2347 3.7558 1.9087 15 6 2.9293 4.9048 0.9257 16 6 3.3185 6.1854 1.7067 17 6 4.5864 5.7437 2.4790 18 6 4.2876 4.2889 2.8963 19 1 -0.5400 0.9353 0.0004 20 1 -0.5400 -0.9353 -0.0004 21 1 1.8500 -0.9354 -0.0004 22 1 1.3586 2.1317 0.0896 23 1 2.6213 1.4026 -0.9314 24 1 3.7400 0.5064 1.0920 25 1 2.4774 1.2355 2.1130 26 1 7.3415 0.7857 -0.4943 27 1 2.3291 3.4728 2.4452 28 1 3.5361 4.8080 0.0254 29 1 1.8692 4.9187 0.6726 30 1 2.5255 6.4717 2.3976 31 1 3.5476 7.0034 1.0237 32 1 4.7349 6.3699 3.3586 33 1 5.4626 5.7826 1.8318 34 1 3.8926 4.2653 3.9119 35 1 5.1955 3.6889 2.8340 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070715021.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:20 Heat of formation + Delta-G solvation = 25.864330 kcal Electronic energy + Delta-G solvation = -14408.088015 eV Core-core repulsion = 12213.634041 eV Total energy + Delta-G solvation = -2194.453975 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -37.95842 -35.45632 -33.48163 -31.38507 -28.53676 -27.89417 -26.59318 -23.70512 -21.60139 -20.02611 -19.29754 -18.89720 -16.36970 -15.43454 -15.26077 -14.76270 -14.25889 -13.52345 -13.27310 -12.75832 -12.45008 -12.26078 -12.16996 -11.53838 -11.00583 -10.83829 -10.68913 -10.59825 -10.43603 -10.35721 -10.23800 -9.96665 -9.74827 -9.59188 -9.40425 -8.90278 -8.43334 -6.72426 -5.97361 -3.36028 2.68011 3.33130 3.48832 3.54850 4.55607 4.94213 5.27871 5.36129 5.40531 5.48222 5.61794 5.72605 5.94814 6.07544 6.18822 6.22210 6.24786 6.29130 6.40759 6.43117 6.47139 6.55662 6.59214 6.74419 6.77053 6.89215 6.99251 7.10290 7.14967 7.22369 7.26981 8.11228 8.45665 9.06605 9.76980 10.19429 11.18441 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.019996 B = 0.015177 C = 0.010128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.942741 B = 1844.502216 C = 2764.082298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.133 4.133 3 C -0.113 4.113 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.257 4.257 7 H 0.079 0.921 8 C 0.037 3.963 9 N -0.899 5.899 10 Si 0.870 3.130 11 H -0.287 1.287 12 H -0.303 1.303 13 H -0.269 1.269 14 C 0.172 3.828 15 C -0.134 4.134 16 C -0.123 4.123 17 C -0.117 4.117 18 C -0.134 4.134 19 H 0.091 0.909 20 H 0.088 0.912 21 H 0.102 0.898 22 H 0.057 0.943 23 H 0.079 0.921 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.262 0.738 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.604 2.698 4.313 9.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.152 4.152 3 C -0.152 4.152 4 C 0.017 3.983 5 N -0.321 5.321 6 C -0.385 4.385 7 H 0.097 0.903 8 C -0.163 4.163 9 N -0.540 5.540 10 Si 0.700 3.300 11 H -0.215 1.215 12 H -0.231 1.231 13 H -0.193 1.193 14 C 0.065 3.935 15 C -0.174 4.174 16 C -0.161 4.161 17 C -0.155 4.155 18 C -0.173 4.173 19 H 0.110 0.890 20 H 0.106 0.894 21 H 0.120 0.880 22 H 0.075 0.925 23 H 0.098 0.902 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.437 2.612 4.256 9.804 hybrid contribution 0.086 -0.902 0.688 1.138 sum -8.350 1.710 4.944 9.854 Atomic orbital electron populations 1.23672 0.95929 1.00941 1.05217 1.23200 0.95915 0.99475 0.96583 1.21395 0.98364 0.93113 1.02342 1.21135 0.93036 0.89680 0.94426 1.44326 1.22442 1.07427 1.57951 1.18616 0.93006 1.02739 1.24149 0.90317 1.25475 0.95877 0.98037 0.96931 1.69890 1.22641 1.31554 1.29916 0.87036 0.75656 0.81731 0.85587 1.21483 1.23119 1.19337 1.21050 0.93919 0.87799 0.90714 1.22839 0.99631 0.94563 1.00320 1.22434 0.97473 0.97627 0.98518 1.22242 0.97980 0.96392 0.98857 1.22543 1.01529 0.95843 0.97361 0.89026 0.89385 0.88010 0.92471 0.90216 0.92824 0.94549 0.92824 0.93191 0.90358 0.93451 0.92731 0.92723 0.93321 0.91616 0.93856 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.19 14.32 29.01 0.42 -2.77 16 2 C -0.13 -2.23 9.52 -36.02 -0.34 -2.57 16 3 C -0.11 -2.17 5.98 -27.88 -0.17 -2.33 16 4 C 0.14 3.09 4.50 -4.04 -0.02 3.07 16 5 N -0.60 -13.86 2.02 -164.39 -0.33 -14.19 16 6 C -0.26 -6.89 8.19 -15.06 -0.12 -7.01 16 7 H 0.08 2.30 7.09 -52.49 -0.37 1.93 16 8 C 0.04 1.05 5.27 -17.43 -0.09 0.96 16 9 N -0.90 -27.05 13.97 55.49 0.78 -26.28 16 10 Si 0.87 22.04 25.19 -169.99 -4.28 17.76 16 11 H -0.29 -7.10 6.65 56.52 0.38 -6.73 16 12 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.17 3.41 3.42 -66.81 -0.23 3.19 16 15 C -0.13 -2.44 6.43 -25.03 -0.16 -2.60 16 16 C -0.12 -1.92 6.91 -24.70 -0.17 -2.09 16 17 C -0.12 -1.98 6.83 -25.07 -0.17 -2.15 16 18 C -0.13 -2.56 6.25 -25.61 -0.16 -2.72 16 19 H 0.09 1.26 7.84 -52.48 -0.41 0.85 16 20 H 0.09 1.11 8.06 -52.49 -0.42 0.68 16 21 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 22 H 0.06 1.04 7.79 -51.93 -0.40 0.64 16 23 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 24 H 0.05 1.27 3.44 -51.93 -0.18 1.09 16 25 H 0.04 0.73 7.91 -51.93 -0.41 0.32 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.05 0.93 7.81 -51.93 -0.41 0.52 16 28 H 0.08 1.63 6.65 -51.93 -0.35 1.29 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.80 7.16 -51.93 -0.37 1.42 16 LS Contribution 276.77 15.07 4.17 4.17 Total: -1.00 -28.35 276.77 -6.75 -35.10 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.87 Total: 0.46 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -1.22 Total: -17.03 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.44 Total: -40.47 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.28 Total: 17.76 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.35 -6.75 -35.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715021.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.969 kcal (2) G-P(sol) polarization free energy of solvation -28.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds