Wall clock time and date at job start Thu Apr 9 2020 11:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99813 * 2 1 4 4 H 1.48497 * 109.46766 * 239.99736 * 3 2 1 5 5 H 1.48499 * 109.47443 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46821 * 119.99982 * 3 2 1 7 7 C 1.38812 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00064 * 202.55405 * 7 2 1 9 9 N 1.36936 * 119.99370 * 22.84038 * 7 2 1 10 10 C 1.46495 * 120.00777 * 33.48086 * 9 7 2 11 11 C 1.53002 * 109.47093 * 94.01656 * 10 9 7 12 12 C 1.52998 * 117.50128 * 243.74768 * 11 10 9 13 13 C 1.53004 * 117.49683 * 175.09030 * 11 10 9 14 14 C 1.46502 * 119.99247 * 213.47794 * 9 7 2 15 15 C 1.54262 * 110.03439 * 57.17135 * 14 9 7 16 16 C 1.54886 * 104.19640 * 217.10278 * 15 14 9 17 17 C 1.54891 * 102.74978 * 37.93958 * 16 15 14 18 18 C 1.53872 * 110.03575 * 299.99706 * 14 9 7 19 19 H 0.97009 * 120.00144 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47532 * 214.02069 * 10 9 7 21 21 H 1.08999 * 109.47238 * 334.02072 * 10 9 7 22 22 H 1.08995 * 115.54841 * 29.42522 * 11 10 9 23 23 H 1.09001 * 117.49723 * 0.02562 * 12 11 10 24 24 H 1.08999 * 117.50271 * 145.02189 * 12 11 10 25 25 H 1.08998 * 117.49780 * 214.98361 * 13 11 10 26 26 H 1.08997 * 117.49835 * 359.97438 * 13 11 10 27 27 H 1.09009 * 110.01609 * 178.60743 * 14 9 7 28 28 H 1.09006 * 110.48290 * 335.78001 * 15 14 9 29 29 H 1.08999 * 110.49211 * 98.41927 * 15 14 9 30 30 H 1.08998 * 110.75889 * 279.62672 * 16 15 14 31 31 H 1.09005 * 110.75633 * 156.25742 * 16 15 14 32 32 H 1.08998 * 110.48933 * 203.37798 * 17 16 15 33 33 H 1.08999 * 110.48803 * 80.73708 * 17 16 15 34 34 H 1.09000 * 110.03615 * 238.57021 * 18 14 9 35 35 H 1.09000 * 110.03346 * 0.02562 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0282 -1.2378 0.3593 9 7 1.4059 -2.3417 -0.4593 10 6 0.4375 -2.2660 -1.5559 11 6 1.1514 -2.5198 -2.8852 12 6 1.1794 -1.3767 -3.9016 13 6 0.2890 -2.5974 -4.1466 14 6 1.7280 -3.6366 0.1455 15 6 1.4439 -3.5973 1.6612 16 6 2.5821 -4.4438 2.2831 17 6 3.8055 -4.0641 1.4124 18 6 3.2295 -3.9335 -0.0128 19 1 -0.4851 0.8401 -0.0004 20 1 -0.3367 -3.0192 -1.4096 21 1 -0.0174 -1.2756 -1.5712 22 1 2.0260 -3.1682 -2.8327 23 1 0.6896 -0.4436 -3.6232 24 1 2.0722 -1.2731 -4.5182 25 1 0.5965 -3.2966 -4.9242 26 1 -0.7869 -2.4681 -4.0295 27 1 1.1400 -4.4247 -0.3250 28 1 1.4851 -2.5725 2.0305 29 1 0.4736 -4.0436 1.8792 30 1 2.3628 -5.5081 2.1979 31 1 2.7469 -4.1645 3.3238 32 1 4.5587 -4.8510 1.4488 33 1 4.2281 -3.1148 1.7416 34 1 3.3703 -4.8660 -0.5593 35 1 3.7188 -3.1139 -0.5392 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070715034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:25 Heat of formation + Delta-G solvation = 29.980072 kcal Electronic energy + Delta-G solvation = -14518.690682 eV Core-core repulsion = 12324.415179 eV Total energy + Delta-G solvation = -2194.275503 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -37.84931 -36.38628 -33.70235 -30.87362 -27.81095 -26.98746 -25.87383 -22.45140 -21.65183 -19.90497 -19.49607 -18.99212 -16.41279 -15.35276 -14.69962 -14.54102 -14.11489 -13.46401 -13.13736 -12.74487 -12.51155 -11.63900 -11.31367 -10.99565 -10.85077 -10.75149 -10.45896 -10.33877 -10.31941 -10.24297 -10.09002 -9.96757 -9.87513 -9.55924 -9.31817 -8.93551 -8.32098 -6.50997 -5.71806 -3.22958 3.40709 3.46684 3.49764 4.51762 4.65311 5.31181 5.35570 5.49178 5.51708 5.63208 5.72103 5.81805 6.00893 6.16931 6.21120 6.30708 6.36128 6.44186 6.48260 6.59670 6.63683 6.65167 6.77078 6.81060 6.89174 6.96503 7.01873 7.09046 7.29262 7.41977 7.82060 7.91405 8.59459 9.28000 9.93391 10.48988 11.29307 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.020499 B = 0.015074 C = 0.010294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.610658 B = 1857.056519 C = 2719.435548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.008 3.992 3 Si 0.891 3.109 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.241 4.241 8 H 0.061 0.939 9 N -0.576 5.576 10 C 0.168 3.832 11 C -0.145 4.145 12 C -0.179 4.179 13 C -0.199 4.199 14 C 0.170 3.830 15 C -0.131 4.131 16 C -0.124 4.124 17 C -0.118 4.118 18 C -0.135 4.135 19 H 0.253 0.747 20 H 0.024 0.976 21 H 0.104 0.896 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.772 -6.185 -1.734 6.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.191 4.191 3 Si 0.721 3.279 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.371 4.371 8 H 0.079 0.921 9 N -0.294 5.294 10 C 0.042 3.958 11 C -0.166 4.166 12 C -0.216 4.216 13 C -0.237 4.237 14 C 0.062 3.938 15 C -0.170 4.170 16 C -0.162 4.162 17 C -0.155 4.155 18 C -0.175 4.175 19 H 0.063 0.937 20 H 0.042 0.958 21 H 0.122 0.878 22 H 0.105 0.895 23 H 0.108 0.892 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.634 -6.031 -1.717 6.801 hybrid contribution 0.525 0.899 -0.135 1.049 sum 3.159 -5.132 -1.852 6.305 Atomic orbital electron populations 1.69980 1.05431 1.25523 1.52531 1.25004 0.94909 0.98373 1.00819 0.86548 0.79299 0.83858 0.78228 1.21024 1.21786 1.20900 1.18871 0.94639 0.85676 1.37893 0.92134 1.43941 1.49127 1.01699 1.34670 1.20672 0.89715 1.02873 0.82547 1.23385 1.00592 0.99919 0.92673 1.22829 1.00921 0.93699 1.04119 1.22872 0.97671 1.01821 1.01341 1.21035 0.92555 0.88432 0.91788 1.22789 0.95789 1.00872 0.97529 1.22439 0.96649 0.98879 0.98227 1.22255 0.96799 1.00110 0.96373 1.22638 0.98969 1.00060 0.95788 0.93703 0.95813 0.87817 0.89478 0.89220 0.90475 0.90379 0.89594 0.93414 0.89727 0.93662 0.92868 0.92895 0.93467 0.92045 0.93882 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 11.33 55.49 0.63 -24.64 16 2 C 0.01 0.22 4.92 -17.43 -0.09 0.13 16 3 Si 0.89 21.60 29.61 -169.99 -5.03 16.56 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.38 7.62 -15.06 -0.11 -6.49 16 8 H 0.06 1.62 7.30 -52.49 -0.38 1.24 16 9 N -0.58 -13.95 2.39 -164.40 -0.39 -14.35 16 10 C 0.17 3.96 5.50 -4.04 -0.02 3.94 16 11 C -0.15 -2.96 6.01 -90.62 -0.54 -3.51 16 12 C -0.18 -3.43 10.18 -26.70 -0.27 -3.70 16 13 C -0.20 -3.47 10.25 -26.69 -0.27 -3.74 16 14 C 0.17 3.56 3.43 -66.81 -0.23 3.33 16 15 C -0.13 -2.64 6.41 -25.08 -0.16 -2.80 16 16 C -0.12 -2.07 6.91 -24.74 -0.17 -2.24 16 17 C -0.12 -1.99 6.83 -25.07 -0.17 -2.16 16 18 C -0.13 -2.54 6.16 -25.61 -0.16 -2.69 16 19 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 20 H 0.02 0.55 8.01 -51.93 -0.42 0.13 16 21 H 0.10 2.75 5.05 -51.93 -0.26 2.49 16 22 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 23 H 0.09 1.84 8.03 -51.93 -0.42 1.42 16 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.05 0.97 7.87 -51.92 -0.41 0.56 16 28 H 0.08 1.99 7.00 -51.93 -0.36 1.63 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.48 7.09 -51.93 -0.37 1.11 16 LS Contribution 278.96 15.07 4.20 4.20 Total: -1.00 -27.16 278.96 -8.78 -35.94 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.98 Total: 2.22 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -2.20 Total: -19.94 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.23 Total: -38.98 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.16 -8.78 -35.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.918 kcal (2) G-P(sol) polarization free energy of solvation -27.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds