Wall clock time and date at job start Thu Apr 9 2020 11:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99813 * 2 1 4 4 H 1.48497 * 109.46766 * 239.99736 * 3 2 1 5 5 H 1.48499 * 109.47443 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46821 * 119.99982 * 3 2 1 7 7 C 1.38812 * 119.99927 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00064 * 202.55405 * 7 2 1 9 9 N 1.36936 * 119.99370 * 22.84038 * 7 2 1 10 10 C 1.46495 * 120.00777 * 33.48086 * 9 7 2 11 11 C 1.53002 * 109.47093 * 94.01656 * 10 9 7 12 12 C 1.52998 * 117.50128 * 243.74768 * 11 10 9 13 13 C 1.53004 * 117.49683 * 175.09030 * 11 10 9 14 14 C 1.46502 * 119.99247 * 213.47794 * 9 7 2 15 15 C 1.54262 * 110.03439 * 57.17135 * 14 9 7 16 16 C 1.54886 * 104.19640 * 217.10278 * 15 14 9 17 17 C 1.54891 * 102.74978 * 37.93958 * 16 15 14 18 18 C 1.53872 * 110.03575 * 299.99706 * 14 9 7 19 19 H 0.97009 * 120.00144 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.47532 * 214.02069 * 10 9 7 21 21 H 1.08999 * 109.47238 * 334.02072 * 10 9 7 22 22 H 1.08995 * 115.54841 * 29.42522 * 11 10 9 23 23 H 1.09001 * 117.49723 * 0.02562 * 12 11 10 24 24 H 1.08999 * 117.50271 * 145.02189 * 12 11 10 25 25 H 1.08998 * 117.49780 * 214.98361 * 13 11 10 26 26 H 1.08997 * 117.49835 * 359.97438 * 13 11 10 27 27 H 1.09009 * 110.01609 * 178.60743 * 14 9 7 28 28 H 1.09006 * 110.48290 * 335.78001 * 15 14 9 29 29 H 1.08999 * 110.49211 * 98.41927 * 15 14 9 30 30 H 1.08998 * 110.75889 * 279.62672 * 16 15 14 31 31 H 1.09005 * 110.75633 * 156.25742 * 16 15 14 32 32 H 1.08998 * 110.48933 * 203.37798 * 17 16 15 33 33 H 1.08999 * 110.48803 * 80.73708 * 17 16 15 34 34 H 1.09000 * 110.03615 * 238.57021 * 18 14 9 35 35 H 1.09000 * 110.03346 * 0.02562 * 18 14 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0282 -1.2378 0.3593 9 7 1.4059 -2.3417 -0.4593 10 6 0.4375 -2.2660 -1.5559 11 6 1.1514 -2.5198 -2.8852 12 6 1.1794 -1.3767 -3.9016 13 6 0.2890 -2.5974 -4.1466 14 6 1.7280 -3.6366 0.1455 15 6 1.4439 -3.5973 1.6612 16 6 2.5821 -4.4438 2.2831 17 6 3.8055 -4.0641 1.4124 18 6 3.2295 -3.9335 -0.0128 19 1 -0.4851 0.8401 -0.0004 20 1 -0.3367 -3.0192 -1.4096 21 1 -0.0174 -1.2756 -1.5712 22 1 2.0260 -3.1682 -2.8327 23 1 0.6896 -0.4436 -3.6232 24 1 2.0722 -1.2731 -4.5182 25 1 0.5965 -3.2966 -4.9242 26 1 -0.7869 -2.4681 -4.0295 27 1 1.1400 -4.4247 -0.3250 28 1 1.4851 -2.5725 2.0305 29 1 0.4736 -4.0436 1.8792 30 1 2.3628 -5.5081 2.1979 31 1 2.7469 -4.1645 3.3238 32 1 4.5587 -4.8510 1.4488 33 1 4.2281 -3.1148 1.7416 34 1 3.3703 -4.8660 -0.5593 35 1 3.7188 -3.1139 -0.5392 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070715034.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:25 Heat of formation + Delta-G solvation = 17.133568 kcal Electronic energy + Delta-G solvation = -14519.247748 eV Core-core repulsion = 12324.415179 eV Total energy + Delta-G solvation = -2194.832569 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.50396 -37.93125 -35.51171 -32.81065 -29.32740 -28.60407 -27.82527 -24.29091 -23.11772 -21.38217 -21.11996 -20.73116 -18.28868 -17.09842 -16.48789 -16.03589 -15.91610 -15.12831 -14.73489 -14.53549 -14.03557 -13.40554 -13.09884 -12.86709 -12.66911 -12.32902 -12.22497 -11.99663 -11.92313 -11.80944 -11.72684 -11.68966 -11.33597 -11.20248 -10.96159 -10.66249 -10.27259 -8.48686 -7.75740 -5.29784 1.44818 1.48090 1.53422 2.54228 3.08401 3.30926 3.66589 4.00757 4.01374 4.13172 4.24151 4.28609 4.45770 4.71107 4.78793 4.81731 4.87432 4.95554 4.97083 4.99471 5.08081 5.17462 5.22917 5.27642 5.33256 5.35182 5.39773 5.55667 5.69382 5.71455 5.79380 5.94264 6.54882 7.25426 7.99436 8.48726 9.21466 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.020499 B = 0.015074 C = 0.010294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.610658 B = 1857.056519 C = 2719.435548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.040 4.040 3 Si 0.943 3.057 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.233 4.233 8 H 0.054 0.946 9 N -0.589 5.589 10 C 0.170 3.830 11 C -0.162 4.162 12 C -0.185 4.185 13 C -0.167 4.167 14 C 0.160 3.840 15 C -0.131 4.131 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.128 4.128 19 H 0.247 0.753 20 H 0.019 0.981 21 H 0.073 0.927 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.067 0.933 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 -7.811 -2.276 9.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.236 4.236 3 Si 0.772 3.228 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.364 4.364 8 H 0.072 0.928 9 N -0.309 5.309 10 C 0.044 3.956 11 C -0.182 4.182 12 C -0.222 4.222 13 C -0.204 4.204 14 C 0.053 3.947 15 C -0.170 4.170 16 C -0.150 4.150 17 C -0.152 4.152 18 C -0.167 4.167 19 H 0.057 0.943 20 H 0.037 0.963 21 H 0.090 0.910 22 H 0.106 0.894 23 H 0.087 0.913 24 H 0.113 0.887 25 H 0.128 0.872 26 H 0.107 0.893 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.796 -7.676 -2.259 8.856 hybrid contribution 0.145 1.338 0.036 1.346 sum 3.941 -6.338 -2.223 7.788 Atomic orbital electron populations 1.70106 1.06529 1.25514 1.54479 1.25565 0.95488 1.00797 1.01737 0.85711 0.78102 0.80797 0.78175 1.20896 1.22220 1.20401 1.18968 0.94274 0.86683 1.36484 0.92836 1.44130 1.49014 1.02320 1.35389 1.20511 0.89915 1.00912 0.84269 1.23088 1.01552 1.01429 0.92160 1.22839 1.02230 0.93154 1.04001 1.22950 0.97395 1.00512 0.99579 1.21283 0.94318 0.87082 0.92012 1.22698 0.97611 0.99294 0.97386 1.22394 0.94544 0.99573 0.98473 1.22241 0.97534 1.00539 0.94846 1.22515 0.96791 1.00206 0.97173 0.94342 0.96250 0.90965 0.89366 0.91346 0.88689 0.87216 0.89293 0.92704 0.93813 0.93596 0.90236 0.91753 0.90212 0.93607 0.91453 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.96 11.33 21.65 0.25 -53.71 16 2 C -0.04 -2.22 4.92 84.86 0.42 -1.80 16 3 Si 0.94 45.28 29.61 68.60 2.03 47.31 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.23 -12.60 7.62 84.03 0.64 -11.96 16 8 H 0.05 2.92 7.30 -2.91 -0.02 2.90 16 9 N -0.59 -28.93 2.39 -674.03 -1.61 -30.55 16 10 C 0.17 8.13 5.50 86.38 0.47 8.61 16 11 C -0.16 -6.48 6.01 -10.79 -0.06 -6.54 16 12 C -0.19 -6.92 10.18 30.62 0.31 -6.61 16 13 C -0.17 -5.41 10.25 30.62 0.31 -5.10 16 14 C 0.16 6.60 3.43 45.71 0.16 6.75 16 15 C -0.13 -5.22 6.41 31.67 0.20 -5.02 16 16 C -0.11 -3.44 6.91 31.88 0.22 -3.22 16 17 C -0.11 -3.56 6.83 31.67 0.22 -3.34 16 18 C -0.13 -4.56 6.16 31.32 0.19 -4.37 16 19 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 20 H 0.02 0.90 8.01 -2.39 -0.02 0.89 16 21 H 0.07 3.96 5.05 -2.39 -0.01 3.95 16 22 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 23 H 0.07 2.84 8.03 -2.39 -0.02 2.82 16 24 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 25 H 0.11 2.91 8.14 -2.39 -0.02 2.90 16 26 H 0.09 2.84 8.14 -2.39 -0.02 2.83 16 27 H 0.05 2.16 7.87 -2.38 -0.02 2.14 16 28 H 0.04 2.10 7.00 -2.38 -0.02 2.08 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.06 1.84 8.14 -2.38 -0.02 1.83 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.89 7.09 -2.39 -0.02 1.87 16 Total: -1.00 -59.23 278.96 4.78 -54.45 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.03 Total: 15.09 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 3.08 Total: -32.60 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -1.37 Total: -84.26 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -59.23 4.78 -54.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070715034.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.587 kcal (2) G-P(sol) polarization free energy of solvation -59.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds