Wall clock time and date at job start Thu Apr 9 2020 11:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 120.00304 * 2 1 4 4 H 1.48506 * 109.47042 * 269.99779 * 3 2 1 5 5 H 1.48497 * 109.47193 * 29.99836 * 3 2 1 6 6 H 1.48497 * 109.47477 * 150.00043 * 3 2 1 7 7 C 1.37880 * 119.99704 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99634 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.46891 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47199 * 179.97438 * 10 9 7 12 12 C 1.76199 * 103.00071 * 179.97438 * 11 10 9 13 13 C 1.39391 * 120.09967 * 179.97438 * 12 11 10 14 14 N 1.31902 * 119.88622 * 179.97438 * 13 12 11 15 15 C 1.32294 * 120.08969 * 0.02562 * 14 13 12 16 16 C 1.38161 * 120.20692 * 359.97438 * 15 14 13 17 17 N 1.32237 * 120.11516 * 359.74981 * 16 15 14 18 18 H 0.97003 * 119.99697 * 0.02562 * 1 2 3 19 19 H 1.08990 * 109.47548 * 59.99922 * 9 7 2 20 20 H 1.09000 * 109.46946 * 299.99501 * 9 7 2 21 21 H 1.08998 * 109.46864 * 59.99967 * 10 9 7 22 22 H 1.09000 * 109.46988 * 299.99561 * 10 9 7 23 23 H 1.08005 * 120.05977 * 359.95417 * 13 12 11 24 24 H 1.08003 * 119.89521 * 180.02562 * 15 14 13 25 25 H 1.08004 * 119.93861 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3381 -5.2331 0.0013 12 6 2.6267 -6.4348 0.0004 13 6 2.3154 -7.7935 0.0013 14 7 3.2834 -8.6895 0.0001 15 6 4.5477 -8.3001 -0.0013 16 6 4.8605 -6.9543 -0.0022 17 7 3.8966 -6.0491 -0.0065 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 2.8718 -3.6044 0.8905 22 1 2.8717 -3.6045 -0.8895 23 1 1.2835 -8.1121 0.0032 24 1 5.3378 -9.0364 -0.0027 25 1 5.8942 -6.6412 -0.0038 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082433253.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:28 Heat of formation + Delta-G solvation = 30.550738 kcal Electronic energy + Delta-G solvation = -10813.239962 eV Core-core repulsion = 8724.649977 eV Total energy + Delta-G solvation = -2088.589986 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 210.052 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.75924 -34.24025 -33.72950 -31.50483 -30.92963 -25.45773 -24.73051 -24.27961 -21.21548 -17.73682 -17.41940 -16.74960 -16.53719 -14.88827 -14.77264 -14.52979 -13.71885 -13.66959 -12.83390 -12.15163 -11.74702 -11.48980 -11.41598 -11.04877 -10.67145 -10.35615 -10.10155 -9.84945 -9.73933 -9.27266 -9.00702 -8.46538 -7.33877 -6.10621 -4.15012 0.72586 1.12922 1.73734 2.78998 3.27557 3.33923 3.37581 3.66110 4.25965 4.38944 4.43329 4.53566 5.08843 5.22697 5.25432 5.45071 5.97430 6.18217 6.24839 6.65862 7.19621 7.46856 7.53578 7.71912 7.84969 8.21782 8.89533 9.49259 11.00310 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.069328 B = 0.006184 C = 0.005701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.777377 B = 4526.883887 C = 4910.213839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.034 3.966 10 C -0.071 4.071 11 S -0.075 6.075 12 C 0.077 3.923 13 C 0.064 3.936 14 N -0.426 5.426 15 C 0.017 3.983 16 C 0.070 3.930 17 N -0.447 5.447 18 H 0.263 0.737 19 H 0.027 0.973 20 H 0.027 0.973 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.172 0.828 24 H 0.167 0.833 25 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 -12.990 0.010 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.219 4.219 11 S 0.169 5.831 12 C -0.174 4.174 13 C -0.105 4.105 14 N -0.140 5.140 15 C -0.145 4.145 16 C -0.094 4.094 17 N -0.166 5.166 18 H 0.073 0.927 19 H 0.046 0.954 20 H 0.046 0.954 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.189 0.811 24 H 0.184 0.816 25 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.249 -12.935 0.009 13.959 hybrid contribution 1.906 1.074 -0.010 2.188 sum 7.155 -11.860 -0.001 13.852 Atomic orbital electron populations 1.69966 1.06082 1.26981 1.49953 1.25013 0.94924 0.99367 0.94951 0.86488 0.79773 0.82927 0.78218 1.20513 1.21077 1.19759 1.21056 0.93141 0.89947 1.51837 0.92218 1.18990 0.93432 0.89499 0.98571 1.23935 1.01787 0.91052 1.05110 1.85790 1.08655 1.00337 1.88317 1.24641 0.96782 0.97904 0.98063 1.23391 1.00096 0.88272 0.98784 1.68374 1.00666 1.37235 1.07732 1.23537 0.94453 0.96158 1.00375 1.23751 0.99882 0.90771 0.94984 1.68987 0.99208 1.37128 1.11262 0.92716 0.95440 0.95422 0.90094 0.90078 0.81102 0.81624 0.81422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.29 55.43 0.74 -25.52 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 15 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 15 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 9 C 0.03 0.87 4.98 -27.88 -0.14 0.73 15 10 C -0.07 -1.49 5.17 37.16 0.19 -1.30 15 11 S -0.07 -1.35 21.93 -107.50 -2.36 -3.70 15 12 C 0.08 1.26 7.00 -16.74 -0.12 1.14 15 13 C 0.06 0.90 10.99 -17.09 -0.19 0.71 15 14 N -0.43 -5.78 10.49 -12.87 -0.13 -5.91 15 15 C 0.02 0.20 11.21 -17.38 -0.19 0.00 15 16 C 0.07 0.86 11.21 -17.41 -0.20 0.66 15 17 N -0.45 -7.25 9.60 -11.91 -0.11 -7.37 15 18 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 19 H 0.03 0.74 8.14 -51.93 -0.42 0.31 15 20 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.08 1.71 8.14 -51.92 -0.42 1.29 15 22 H 0.08 1.71 8.14 -51.92 -0.42 1.29 15 23 H 0.17 2.01 8.06 -52.48 -0.42 1.59 15 24 H 0.17 1.23 8.06 -52.48 -0.42 0.81 15 25 H 0.17 1.46 8.06 -52.48 -0.42 1.04 15 LS Contribution 244.08 15.07 3.68 3.68 Total: -1.00 -30.53 244.08 -6.77 -37.30 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: -2.50 Total: -3.53 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.05 Total: -11.20 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.49 Total: -38.80 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.36 Total: -3.70 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.53 -6.77 -37.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082433253.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.850 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds