Wall clock time and date at job start Thu Apr 9 2020 11:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47517 * 2 1 4 4 N 1.46893 * 109.47116 * 239.99447 * 2 1 3 5 5 C 1.46902 * 110.99755 * 85.00388 * 4 2 1 6 6 C 1.53005 * 109.46509 * 185.35424 * 5 4 2 7 7 C 1.50700 * 115.55181 * 294.79615 * 6 5 4 8 8 H 1.07994 * 120.00148 * 95.21068 * 7 6 5 9 9 C 1.37879 * 120.00204 * 274.93562 * 7 6 5 10 10 N 1.31519 * 120.00104 * 355.41757 * 9 7 6 11 11 Si 1.86800 * 120.00303 * 175.41789 * 9 7 6 12 12 H 1.48499 * 109.47117 * 89.99784 * 11 9 7 13 13 H 1.48496 * 109.47174 * 210.00059 * 11 9 7 14 14 H 1.48499 * 109.46671 * 329.99950 * 11 9 7 15 15 C 1.52995 * 117.50011 * 80.47602 * 6 5 4 16 16 C 1.53008 * 117.49593 * 149.13390 * 6 5 4 17 17 C 1.53000 * 109.46948 * 119.99492 * 2 1 3 18 18 C 1.53004 * 117.50017 * 8.74613 * 17 2 1 19 19 C 1.53006 * 117.50034 * 300.08952 * 17 2 1 20 20 H 1.09002 * 109.47228 * 60.00139 * 1 2 3 21 21 H 1.08993 * 109.47342 * 180.02562 * 1 2 3 22 22 H 1.09008 * 109.47166 * 300.00641 * 1 2 3 23 23 H 1.00910 * 110.99808 * 208.95328 * 4 2 1 24 24 H 1.08997 * 109.47162 * 65.35740 * 5 4 2 25 25 H 1.08999 * 109.47082 * 305.35118 * 5 4 2 26 26 H 0.96998 * 120.00552 * 185.00004 * 10 9 7 27 27 H 1.09007 * 117.49179 * 214.99883 * 15 6 5 28 28 H 1.08996 * 117.50213 * 0.02562 * 15 6 5 29 29 H 1.09001 * 117.49637 * 359.97154 * 16 6 5 30 30 H 1.09000 * 117.49976 * 144.97173 * 16 6 5 31 31 H 1.08999 * 115.54986 * 154.41606 * 17 2 1 32 32 H 1.09000 * 117.49576 * 0.02562 * 18 17 2 33 33 H 1.08997 * 117.49659 * 145.01849 * 18 17 2 34 34 H 1.08999 * 117.49669 * 214.98077 * 19 17 2 35 35 H 1.08999 * 117.49706 * 359.97438 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1993 5 6 2.0825 0.2225 -2.3468 6 6 2.4671 -0.5612 -3.6034 7 6 3.8487 -1.1630 -3.5966 8 1 3.9892 -2.1891 -3.2906 9 6 4.9326 -0.4053 -3.9866 10 7 4.7514 0.8122 -4.4498 11 14 6.6586 -1.1080 -3.8571 12 1 7.0055 -1.8049 -5.1218 13 1 7.6249 -0.0062 -3.6179 14 1 6.7172 -2.0717 -2.7288 15 6 1.3603 -1.3409 -4.3161 16 6 1.9207 -0.0615 -4.9424 17 6 2.0399 -0.7211 1.2493 18 6 1.0107 -1.4564 2.1102 19 6 1.6339 -0.1505 2.6097 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5140 0.8900 23 1 2.9173 -1.1206 -1.0285 24 1 2.8293 0.9932 -2.1564 25 1 1.1082 0.6888 -2.4934 26 1 5.5050 1.3182 -4.7917 27 1 1.6316 -2.2892 -4.7801 28 1 0.3581 -1.2952 -3.8901 29 1 1.2870 0.8252 -4.9280 30 1 2.5607 -0.1677 -5.8183 31 1 3.0329 -1.1627 1.1648 32 1 -0.0296 -1.4266 1.7863 33 1 1.3267 -2.3814 2.5924 34 1 2.3596 -0.2170 3.4202 35 1 1.0038 0.7389 2.6146 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:41 Heat of formation + Delta-G solvation = 26.646924 kcal Electronic energy + Delta-G solvation = -14002.354249 eV Core-core repulsion = 11807.934210 eV Total energy + Delta-G solvation = -2194.420039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.61734 -38.31737 -35.19630 -33.93250 -30.47787 -27.68810 -26.71070 -24.03553 -23.11172 -22.77602 -21.03793 -20.16457 -17.94583 -17.17264 -16.63293 -16.13941 -15.94766 -15.47279 -14.71227 -14.49218 -13.93757 -13.39631 -13.29006 -12.93700 -12.84922 -12.69783 -12.58868 -12.29950 -12.07730 -11.97202 -11.65752 -11.33456 -11.08182 -10.91133 -10.80580 -10.35894 -9.89538 -9.07623 -8.07139 -6.19745 1.40356 1.42405 1.51712 2.42964 2.89529 3.19756 3.37615 3.74764 3.85467 4.06272 4.21331 4.33986 4.36562 4.47367 4.62511 4.69497 4.76361 4.84012 4.90054 4.99203 4.99775 5.08214 5.10374 5.19989 5.28384 5.31444 5.32890 5.47977 5.66517 5.71876 5.82373 6.41611 6.49859 6.68568 6.90195 7.48343 8.99518 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.030166 B = 0.009079 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.978690 B = 3083.236253 C = 3671.133367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.108 3.892 3 H 0.023 0.977 4 N -0.672 5.672 5 C 0.123 3.877 6 C 0.023 3.977 7 C -0.502 4.502 8 H 0.053 0.947 9 C 0.022 3.978 10 N -0.910 5.910 11 Si 0.948 3.052 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.266 1.266 15 C -0.178 4.178 16 C -0.163 4.163 17 C -0.173 4.173 18 C -0.168 4.168 19 C -0.168 4.168 20 H 0.040 0.960 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.339 0.661 24 H -0.004 1.004 25 H 0.047 0.953 26 H 0.258 0.742 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.337 -1.580 10.921 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.001 4.001 3 H 0.041 0.959 4 N -0.303 5.303 5 C -0.007 4.007 6 C 0.023 3.977 7 C -0.540 4.540 8 H 0.071 0.929 9 C -0.178 4.178 10 N -0.548 5.548 11 Si 0.774 3.226 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.190 1.190 15 C -0.215 4.215 16 C -0.201 4.201 17 C -0.191 4.191 18 C -0.205 4.205 19 C -0.206 4.206 20 H 0.060 0.940 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.157 0.843 24 H 0.014 0.986 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.852 -1.641 10.749 12.852 hybrid contribution 1.997 0.493 -0.298 2.078 sum -4.855 -1.148 10.450 11.580 Atomic orbital electron populations 1.21837 0.93777 1.02222 1.01056 1.21056 0.96333 0.94358 0.88384 0.95878 1.60513 1.33560 1.32597 1.03604 1.21195 0.96187 0.92390 0.90923 1.18917 0.91936 0.97793 0.89075 1.20702 0.90944 0.97363 1.44954 0.92926 1.25693 1.02206 0.95010 0.94855 1.70122 1.31772 1.11279 1.41593 0.85710 0.80319 0.77947 0.78634 1.20470 1.21317 1.19010 1.22830 0.98100 0.94605 1.05976 1.22405 1.02757 0.95940 0.99019 1.22388 0.99775 1.05365 0.91589 1.23159 0.98911 0.96019 1.02403 1.23045 1.03801 0.97902 0.95816 0.94046 0.91622 0.90961 0.84309 0.98596 0.93475 0.93316 0.91100 0.89697 0.91347 0.92444 0.88911 0.87533 0.88327 0.87900 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 8.01 71.98 0.58 -3.02 16 2 C 0.11 3.48 3.01 44.92 0.14 3.62 16 3 H 0.02 0.81 7.86 -2.39 -0.02 0.79 16 4 N -0.67 -26.54 6.28 -491.58 -3.09 -29.63 16 5 C 0.12 5.59 5.32 86.30 0.46 6.05 16 6 C 0.02 1.17 1.65 -52.93 -0.09 1.08 16 7 C -0.50 -27.37 8.33 25.60 0.21 -27.16 16 8 H 0.05 2.88 7.82 -2.91 -0.02 2.85 16 9 C 0.02 1.22 5.43 84.65 0.46 1.68 16 10 N -0.91 -52.48 12.65 21.45 0.27 -52.21 16 11 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 15 C -0.18 -7.98 9.96 30.62 0.30 -7.68 16 16 C -0.16 -7.98 9.14 30.62 0.28 -7.70 16 17 C -0.17 -4.70 5.82 -10.79 -0.06 -4.76 16 18 C -0.17 -3.66 9.57 30.62 0.29 -3.36 16 19 C -0.17 -3.54 9.90 30.62 0.30 -3.23 16 20 H 0.04 1.21 7.38 -2.39 -0.02 1.19 16 21 H 0.06 1.77 6.97 -2.39 -0.02 1.75 16 22 H 0.07 1.60 7.07 -2.38 -0.02 1.58 16 23 H 0.34 14.22 7.75 -89.69 -0.69 13.53 16 24 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.05 2.03 7.28 -2.39 -0.02 2.02 16 26 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 27 H 0.07 3.17 8.14 -2.38 -0.02 3.15 16 28 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 29 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 30 H 0.06 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.09 2.70 7.85 -2.39 -0.02 2.68 16 32 H 0.11 2.20 5.85 -2.39 -0.01 2.19 16 33 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.10 1.94 7.60 -2.39 -0.02 1.92 16 Total: -1.00 -58.27 284.66 2.44 -55.83 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.36 Total: 24.94 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 2.87 Total: -44.48 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -2.81 Total: -81.84 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -58.27 2.44 -55.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.476 kcal (2) G-P(sol) polarization free energy of solvation -58.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds