Wall clock time and date at job start Thu Apr 9 2020 11:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09001 * 109.47327 * 2 1 4 4 C 1.50698 * 109.47520 * 240.00219 * 2 1 3 5 5 H 1.07997 * 119.99991 * 240.00633 * 4 2 1 6 6 C 1.37881 * 120.00154 * 59.99618 * 4 2 1 7 7 N 1.31517 * 119.99636 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99905 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47015 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47122 * 299.99632 * 8 6 4 11 11 H 1.48497 * 109.47294 * 60.00273 * 8 6 4 12 12 N 1.46903 * 109.47051 * 119.99953 * 2 1 3 13 13 C 1.46893 * 110.99919 * 63.47054 * 12 2 1 14 14 C 1.46903 * 110.99992 * 187.42440 * 12 2 1 15 15 H 1.08996 * 109.35498 * 305.56915 * 14 12 2 16 16 C 1.50069 * 109.35857 * 65.28853 * 14 12 2 17 17 C 1.29262 * 124.21864 * 137.48950 * 16 14 12 18 18 C 1.50065 * 124.01262 * 359.26908 * 17 16 14 19 19 C 1.53018 * 110.15164 * 17.26391 * 18 17 16 20 20 C 1.53021 * 109.35994 * 185.84548 * 14 12 2 21 21 H 1.09003 * 109.47424 * 173.43456 * 1 2 3 22 22 H 1.09001 * 109.47528 * 293.43743 * 1 2 3 23 23 H 1.09007 * 109.47117 * 53.43390 * 1 2 3 24 24 H 0.97001 * 119.99910 * 179.97438 * 7 6 4 25 25 H 1.09008 * 109.47374 * 60.00369 * 13 12 2 26 26 H 1.09000 * 109.46997 * 179.97438 * 13 12 2 27 27 H 1.09001 * 109.47435 * 299.99614 * 13 12 2 28 28 H 1.07994 * 117.96532 * 317.31681 * 16 14 12 29 29 H 1.07993 * 118.02036 * 179.38070 * 17 16 14 30 30 H 1.08999 * 109.35954 * 257.05064 * 18 17 16 31 31 H 1.08999 * 109.24262 * 137.40087 * 18 17 16 32 32 H 1.09006 * 109.64154 * 190.87775 * 19 18 17 33 33 H 1.09006 * 109.81734 * 70.35311 * 19 18 17 34 34 H 1.08999 * 109.63802 * 310.04115 * 20 14 12 35 35 H 1.08998 * 109.64597 * 70.45713 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8270 -0.4198 -5.2204 10 1 3.8065 -1.1206 -4.0081 11 1 1.8260 -2.5201 -4.0077 12 7 2.0196 -0.6925 1.1995 13 6 1.6175 -2.1053 1.1926 14 6 3.4772 -0.5605 1.3253 15 1 3.9518 -0.9058 0.4069 16 6 3.8283 0.8803 1.5554 17 6 4.7098 1.2863 2.4092 18 6 5.4960 0.3724 3.3029 19 6 5.4317 -1.0631 2.7768 20 6 3.9642 -1.4128 2.4993 21 1 -0.3634 -1.0209 -0.1175 22 1 -0.3634 0.4087 0.9429 23 1 -0.3634 0.6123 -0.8254 24 1 0.7094 1.1619 -3.4844 25 1 2.0314 -2.5967 0.3120 26 1 1.9933 -2.5944 2.0913 27 1 0.5299 -2.1735 1.1693 28 1 3.3138 1.6268 0.9686 29 1 4.8906 2.3482 2.4857 30 1 5.0809 0.4070 4.3102 31 1 6.5348 0.7015 3.3288 32 1 5.8360 -1.7457 3.5243 33 1 6.0085 -1.1452 1.8556 34 1 3.3629 -1.1975 3.3825 35 1 3.8777 -2.4693 2.2458 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162198894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:50:54 Heat of formation + Delta-G solvation = -3.760261 kcal Electronic energy + Delta-G solvation = -14500.547111 eV Core-core repulsion = 12304.808517 eV Total energy + Delta-G solvation = -2195.738593 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.19322 -37.41002 -34.56225 -32.10720 -31.40166 -29.35702 -27.32538 -26.53273 -23.51746 -22.47857 -21.18898 -19.06023 -17.87211 -17.43712 -16.88476 -15.89348 -15.38000 -15.12201 -14.42172 -14.35431 -13.89901 -13.67320 -13.34380 -13.16142 -13.11827 -12.89017 -12.70544 -12.50911 -12.14007 -12.07692 -11.81974 -11.64882 -11.28362 -11.15248 -10.76672 -10.46782 -9.89454 -8.88305 -8.05312 -6.26542 1.36119 1.36208 1.44023 1.49806 2.38343 3.14097 3.51059 3.86576 4.01371 4.23956 4.49299 4.52269 4.60742 4.67473 4.75479 4.84744 4.88810 4.99417 5.07159 5.09306 5.11239 5.18897 5.20732 5.24380 5.41610 5.49013 5.55316 5.68905 5.87688 5.98069 6.12768 6.21311 6.37838 6.70207 6.94107 7.43491 8.91232 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.034851 B = 0.009831 C = 0.009370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.219610 B = 2847.590342 C = 2987.388229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.207 3.793 3 H 0.010 0.990 4 C -0.548 4.548 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.947 3.053 9 H -0.282 1.282 10 H -0.276 1.276 11 H -0.272 1.272 12 N -0.537 5.537 13 C 0.034 3.966 14 C 0.118 3.882 15 H 0.022 0.978 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.083 4.083 19 C -0.115 4.115 20 C -0.107 4.107 21 H 0.028 0.972 22 H 0.028 0.972 23 H 0.055 0.945 24 H 0.262 0.738 25 H 0.012 0.988 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.224 -3.354 9.965 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.100 3.900 3 H 0.028 0.972 4 C -0.587 4.587 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.773 3.227 9 H -0.207 1.207 10 H -0.201 1.201 11 H -0.197 1.197 12 N -0.261 5.261 13 C -0.114 4.114 14 C 0.010 3.990 15 H 0.040 0.960 16 C -0.167 4.167 17 C -0.176 4.176 18 C -0.120 4.120 19 C -0.153 4.153 20 C -0.145 4.145 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.031 0.969 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.128 0.872 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.906 -3.009 10.235 12.709 hybrid contribution 0.206 -0.385 -2.221 2.263 sum 7.112 -3.393 8.014 11.239 Atomic orbital electron populations 1.21583 0.97554 0.99386 0.98832 1.19092 0.92373 0.93113 0.85416 0.97245 1.21863 1.31466 1.12572 0.92762 0.93304 1.25635 0.95214 0.95604 1.01607 1.70014 1.37441 1.23853 1.24015 0.85789 0.78615 0.78949 0.79374 1.20739 1.20130 1.19735 1.62578 1.10804 1.12984 1.39697 1.22260 1.00410 0.89125 0.99589 1.20311 0.88558 0.93320 0.96855 0.96037 1.21941 0.98746 0.96734 0.99324 1.22170 0.97812 1.00292 0.97335 1.20474 0.99988 0.93245 0.98258 1.21613 0.95207 0.97118 1.01393 1.21696 0.97052 0.98464 0.97278 0.95289 0.95271 0.92641 0.92927 0.96945 0.90420 0.92628 0.91030 0.87232 0.89631 0.89426 0.89097 0.92878 0.90994 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.54 71.98 0.61 -5.22 16 2 C 0.21 10.81 2.19 44.16 0.10 10.90 16 3 H 0.01 0.56 6.15 -2.39 -0.01 0.55 16 4 C -0.55 -30.41 6.98 25.60 0.18 -30.23 16 5 H 0.05 2.72 5.84 -2.91 -0.02 2.71 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -53.36 11.40 21.45 0.24 -53.12 16 8 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 12 N -0.54 -23.70 4.59 -881.74 -4.04 -27.74 16 13 C 0.03 1.36 8.42 127.69 1.08 2.44 16 14 C 0.12 4.71 2.09 43.98 0.09 4.80 16 15 H 0.02 1.01 6.81 -2.39 -0.02 1.00 16 16 C -0.15 -5.80 8.91 27.21 0.24 -5.56 16 17 C -0.16 -4.80 9.80 27.21 0.27 -4.53 16 18 C -0.08 -1.91 6.11 29.66 0.18 -1.73 16 19 C -0.12 -2.80 6.01 30.73 0.18 -2.61 16 20 C -0.11 -3.24 4.29 30.73 0.13 -3.10 16 21 H 0.03 1.40 6.82 -2.39 -0.02 1.39 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.05 3.05 6.28 -2.38 -0.01 3.04 16 24 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.01 0.52 6.26 -2.38 -0.01 0.51 16 26 H 0.08 2.53 6.17 -2.39 -0.01 2.51 16 27 H 0.05 2.20 6.54 -2.39 -0.02 2.18 16 28 H 0.07 3.24 6.36 -2.91 -0.02 3.22 16 29 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.05 1.39 8.13 -2.38 -0.02 1.37 16 34 H 0.07 2.12 8.12 -2.39 -0.02 2.11 16 35 H 0.06 1.88 6.91 -2.39 -0.02 1.86 16 Total: -1.00 -61.02 264.83 2.79 -58.22 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.05 Total: 9.58 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 3.51 Total: -33.32 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -3.80 Total: -80.86 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.02 2.79 -58.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162198894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.463 kcal (2) G-P(sol) polarization free energy of solvation -61.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds