Wall clock time and date at job start Thu Apr 9 2020 11:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 115.55430 * 2 1 4 4 C 1.52999 * 117.49953 * 214.32973 * 2 1 3 5 5 C 1.53003 * 117.50014 * 145.66533 * 2 1 3 6 6 H 1.09003 * 117.49681 * 359.97438 * 5 2 1 7 7 C 1.52996 * 117.50287 * 214.97730 * 5 2 1 8 8 N 1.46892 * 109.47122 * 174.99825 * 7 5 2 9 9 C 1.46905 * 110.99964 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47119 * 174.70375 * 9 8 7 11 11 C 1.50701 * 115.55324 * 65.17300 * 10 9 8 12 12 H 1.08000 * 119.99786 * 264.97147 * 11 10 9 13 13 C 1.37877 * 119.99933 * 84.95586 * 11 10 9 14 14 N 1.31513 * 120.00338 * 353.07656 * 13 11 10 15 15 Si 1.86802 * 119.99697 * 173.06833 * 13 11 10 16 16 H 1.48496 * 109.47228 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46924 * 120.00759 * 15 13 11 18 18 H 1.48503 * 109.47031 * 240.00555 * 15 13 11 19 19 C 1.53007 * 117.50103 * 279.50130 * 10 9 8 20 20 C 1.52999 * 117.49833 * 210.84373 * 10 9 8 21 21 H 1.08998 * 109.47243 * 274.41887 * 1 2 3 22 22 H 1.09003 * 109.47128 * 34.41932 * 1 2 3 23 23 H 1.08997 * 109.47047 * 154.41781 * 1 2 3 24 24 H 1.09000 * 117.50091 * 359.97438 * 4 2 1 25 25 H 1.09000 * 117.50386 * 145.02386 * 4 2 1 26 26 H 1.09000 * 109.47497 * 295.00716 * 7 5 2 27 27 H 1.09007 * 109.46855 * 55.00128 * 7 5 2 28 28 H 1.00903 * 111.00241 * 56.05141 * 8 7 5 29 29 H 1.08998 * 109.47329 * 294.70611 * 9 8 7 30 30 H 1.09006 * 109.46822 * 54.70909 * 9 8 7 31 31 H 0.96996 * 120.00380 * 185.02823 * 14 13 11 32 32 H 1.09000 * 117.49329 * 359.97438 * 19 10 9 33 33 H 1.08997 * 117.49983 * 145.01730 * 19 10 9 34 34 H 1.09005 * 117.49421 * 214.98058 * 20 10 9 35 35 H 1.08998 * 117.50441 * 359.97120 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2365 -1.1207 0.7655 6 1 1.6112 -1.8577 1.2694 7 6 3.5490 -0.7754 1.4717 8 7 4.0097 -1.9369 2.2441 9 6 5.2710 -1.6417 2.9370 10 6 5.6497 -2.8232 3.8322 11 6 5.9713 -4.1074 3.1122 12 1 5.2047 -4.8554 2.9738 13 6 7.2441 -4.3273 2.6299 14 7 8.1400 -3.3656 2.6760 15 14 7.6961 -5.9912 1.9113 16 1 6.5189 -6.8941 1.9748 17 1 8.1141 -5.8223 0.4964 18 1 8.8146 -6.5798 2.6910 19 6 4.9562 -2.9302 5.1918 20 6 6.4281 -2.5176 5.1134 21 1 -0.3633 0.0792 1.0246 22 1 -0.3633 0.8478 -0.5809 23 1 -0.3633 -0.9269 -0.4437 24 1 1.6112 -1.8583 -1.2685 25 1 3.1715 -0.8748 -1.2685 26 1 4.3022 -0.5105 0.7297 27 1 3.3890 0.0677 2.1440 28 1 4.1036 -2.7497 1.6536 29 1 6.0588 -1.4753 2.2023 30 1 5.1491 -0.7473 3.5480 31 1 9.0120 -3.4953 2.2714 32 1 4.2304 -2.1586 5.4486 33 1 4.7328 -3.9294 5.5656 34 1 7.1726 -3.2457 5.4357 35 1 6.6709 -1.4750 5.3184 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166991551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:05 Heat of formation + Delta-G solvation = 34.415631 kcal Electronic energy + Delta-G solvation = -13641.314240 eV Core-core repulsion = 11447.231077 eV Total energy + Delta-G solvation = -2194.083162 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.06631 -36.68582 -33.70630 -31.87646 -28.89347 -26.46434 -25.25052 -22.94476 -20.97909 -20.70380 -20.15910 -18.91957 -15.95213 -15.52031 -14.64538 -14.47011 -14.08690 -13.76460 -13.42983 -13.07104 -12.66345 -12.38093 -11.85248 -11.54217 -11.32924 -11.26780 -10.96705 -10.87508 -10.73466 -10.40545 -10.09731 -9.81520 -9.62064 -9.30401 -8.70454 -8.39407 -8.01985 -7.43425 -5.99879 -4.05632 3.28478 3.37518 3.41806 3.89236 4.42117 4.63069 4.99381 5.04805 5.26518 5.29043 5.37689 5.63704 5.71778 5.78216 5.83953 5.94454 6.00505 6.04204 6.14619 6.27942 6.33053 6.52944 6.56292 6.63295 6.89421 6.90191 6.97371 7.21435 7.57211 7.60827 7.91307 8.06728 8.35815 8.54061 8.98052 9.59874 11.08226 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032170 B = 0.007462 C = 0.006556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.171825 B = 3751.549422 C = 4270.033575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.159 4.159 3 H 0.099 0.901 4 C -0.181 4.181 5 C -0.137 4.137 6 H 0.111 0.889 7 C 0.088 3.912 8 N -0.680 5.680 9 C 0.106 3.894 10 C 0.049 3.951 11 C -0.491 4.491 12 H 0.061 0.939 13 C 0.069 3.931 14 N -0.881 5.881 15 Si 0.887 3.113 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.284 1.284 19 C -0.200 4.200 20 C -0.163 4.163 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.021 0.979 27 H 0.064 0.936 28 H 0.348 0.652 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.258 0.742 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.566 5.297 -4.341 11.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.177 4.177 3 H 0.117 0.883 4 C -0.218 4.218 5 C -0.156 4.156 6 H 0.129 0.871 7 C -0.042 4.042 8 N -0.311 5.311 9 C -0.023 4.023 10 C 0.049 3.951 11 C -0.529 4.529 12 H 0.079 0.921 13 C -0.133 4.133 14 N -0.518 5.518 15 Si 0.715 3.285 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.210 1.210 19 C -0.238 4.238 20 C -0.201 4.201 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.166 0.834 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.731 5.464 -3.783 11.784 hybrid contribution 1.121 -0.820 -1.182 1.824 sum -8.610 4.644 -4.965 10.970 Atomic orbital electron populations 1.21331 0.93138 1.01510 1.01693 1.22343 0.94967 0.94663 1.05760 0.88257 1.23217 1.02341 1.01249 0.95003 1.22499 0.99143 1.01080 0.92832 0.87098 1.21464 0.92819 0.94823 0.95047 1.60435 1.32780 1.05230 1.32641 1.21423 0.88169 0.96352 0.96351 1.18747 0.96840 0.94394 0.85144 1.20514 0.95016 1.00731 1.36657 0.92125 1.25009 0.96273 0.96384 0.95682 1.70003 1.05963 1.31967 1.43897 0.86623 0.78567 0.84820 0.78535 1.19655 1.21198 1.21023 1.22869 0.94623 0.99921 1.06350 1.22534 0.92927 0.98605 1.06042 0.92251 0.92596 0.92708 0.89126 0.89135 0.96096 0.91743 0.83383 0.94743 0.94559 0.93199 0.91687 0.90909 0.90359 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 10.19 37.16 0.38 -0.83 16 2 C -0.16 -1.91 6.12 -90.62 -0.55 -2.46 16 3 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.18 -2.31 9.83 -26.69 -0.26 -2.57 16 5 C -0.14 -1.97 5.67 -90.58 -0.51 -2.48 16 6 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 7 C 0.09 1.49 5.96 -3.83 -0.02 1.46 16 8 N -0.68 -13.74 6.47 -113.78 -0.74 -14.48 16 9 C 0.11 2.43 5.54 -3.82 -0.02 2.41 16 10 C 0.05 1.24 1.56 -155.66 -0.24 0.99 16 11 C -0.49 -13.31 8.32 -34.44 -0.29 -13.60 16 12 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 13 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 14 N -0.88 -25.02 12.95 55.43 0.72 -24.30 16 15 Si 0.89 21.09 29.55 -169.99 -5.02 16.06 16 16 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.20 -4.58 9.96 -26.69 -0.27 -4.85 16 20 C -0.16 -3.95 9.46 -26.69 -0.25 -4.21 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.53 7.90 -51.93 -0.41 0.12 16 24 H 0.09 1.06 8.05 -51.93 -0.42 0.64 16 25 H 0.09 1.17 8.03 -51.93 -0.42 0.75 16 26 H 0.02 0.36 7.88 -51.93 -0.41 -0.05 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.35 7.35 8.30 -39.29 -0.33 7.03 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.79 8.08 -51.93 -0.42 0.37 16 31 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 32 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 294.07 15.07 4.43 4.43 Total: -1.00 -27.61 294.07 -8.92 -36.54 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.17 Total: 6.08 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -2.14 Total: -24.34 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.02 Total: -38.78 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.61 -8.92 -36.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166991551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.952 kcal (2) G-P(sol) polarization free energy of solvation -27.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds