Wall clock time and date at job start Thu Apr 9 2020 11:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 115.55430 * 2 1 4 4 C 1.52999 * 117.49953 * 214.32973 * 2 1 3 5 5 C 1.53003 * 117.50014 * 145.66533 * 2 1 3 6 6 H 1.09003 * 117.49681 * 359.97438 * 5 2 1 7 7 C 1.52996 * 117.50287 * 214.97730 * 5 2 1 8 8 N 1.46892 * 109.47122 * 174.99825 * 7 5 2 9 9 C 1.46905 * 110.99964 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47119 * 174.70375 * 9 8 7 11 11 C 1.50701 * 115.55324 * 65.17300 * 10 9 8 12 12 H 1.08000 * 119.99786 * 264.97147 * 11 10 9 13 13 C 1.37877 * 119.99933 * 84.95586 * 11 10 9 14 14 N 1.31513 * 120.00338 * 353.07656 * 13 11 10 15 15 Si 1.86802 * 119.99697 * 173.06833 * 13 11 10 16 16 H 1.48496 * 109.47228 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46924 * 120.00759 * 15 13 11 18 18 H 1.48503 * 109.47031 * 240.00555 * 15 13 11 19 19 C 1.53007 * 117.50103 * 279.50130 * 10 9 8 20 20 C 1.52999 * 117.49833 * 210.84373 * 10 9 8 21 21 H 1.08998 * 109.47243 * 274.41887 * 1 2 3 22 22 H 1.09003 * 109.47128 * 34.41932 * 1 2 3 23 23 H 1.08997 * 109.47047 * 154.41781 * 1 2 3 24 24 H 1.09000 * 117.50091 * 359.97438 * 4 2 1 25 25 H 1.09000 * 117.50386 * 145.02386 * 4 2 1 26 26 H 1.09000 * 109.47497 * 295.00716 * 7 5 2 27 27 H 1.09007 * 109.46855 * 55.00128 * 7 5 2 28 28 H 1.00903 * 111.00241 * 56.05141 * 8 7 5 29 29 H 1.08998 * 109.47329 * 294.70611 * 9 8 7 30 30 H 1.09006 * 109.46822 * 54.70909 * 9 8 7 31 31 H 0.96996 * 120.00380 * 185.02823 * 14 13 11 32 32 H 1.09000 * 117.49329 * 359.97438 * 19 10 9 33 33 H 1.08997 * 117.49983 * 145.01730 * 19 10 9 34 34 H 1.09005 * 117.49421 * 214.98058 * 20 10 9 35 35 H 1.08998 * 117.50441 * 359.97120 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2365 -1.1207 0.7655 6 1 1.6112 -1.8577 1.2694 7 6 3.5490 -0.7754 1.4717 8 7 4.0097 -1.9369 2.2441 9 6 5.2710 -1.6417 2.9370 10 6 5.6497 -2.8232 3.8322 11 6 5.9713 -4.1074 3.1122 12 1 5.2047 -4.8554 2.9738 13 6 7.2441 -4.3273 2.6299 14 7 8.1400 -3.3656 2.6760 15 14 7.6961 -5.9912 1.9113 16 1 6.5189 -6.8941 1.9748 17 1 8.1141 -5.8223 0.4964 18 1 8.8146 -6.5798 2.6910 19 6 4.9562 -2.9302 5.1918 20 6 6.4281 -2.5176 5.1134 21 1 -0.3633 0.0792 1.0246 22 1 -0.3633 0.8478 -0.5809 23 1 -0.3633 -0.9269 -0.4437 24 1 1.6112 -1.8583 -1.2685 25 1 3.1715 -0.8748 -1.2685 26 1 4.3022 -0.5105 0.7297 27 1 3.3890 0.0677 2.1440 28 1 4.1036 -2.7497 1.6536 29 1 6.0588 -1.4753 2.2023 30 1 5.1491 -0.7473 3.5480 31 1 9.0120 -3.4953 2.2714 32 1 4.2304 -2.1586 5.4486 33 1 4.7328 -3.9294 5.5656 34 1 7.1726 -3.2457 5.4357 35 1 6.6709 -1.4750 5.3184 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166991551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:05 Heat of formation + Delta-G solvation = 19.315406 kcal Electronic energy + Delta-G solvation = -13641.969035 eV Core-core repulsion = 11447.231077 eV Total energy + Delta-G solvation = -2194.737957 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.29784 -38.41985 -35.28406 -33.95556 -29.96168 -28.02434 -27.15629 -24.51439 -22.82794 -21.85429 -21.36841 -20.73374 -17.92116 -16.93832 -16.62729 -15.88351 -15.52073 -15.39820 -14.93604 -14.32390 -13.96015 -13.75549 -13.30392 -13.13551 -12.93296 -12.87388 -12.81081 -12.27930 -12.21816 -12.09526 -11.99244 -11.35221 -10.84176 -10.71245 -10.62143 -10.38395 -9.92750 -9.12262 -8.08572 -6.19713 1.39322 1.43244 1.53653 2.43144 2.84543 3.19359 3.27429 3.68185 3.93241 4.01660 4.15971 4.33063 4.44544 4.51592 4.60733 4.69624 4.73697 4.87137 4.92739 4.96595 4.99735 5.02804 5.05583 5.08975 5.22623 5.28633 5.35085 5.50160 5.66854 5.68904 5.80557 6.37522 6.48805 6.65442 6.89675 7.48440 8.99253 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032170 B = 0.007462 C = 0.006556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.171825 B = 3751.549422 C = 4270.033575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.141 4.141 3 H 0.104 0.896 4 C -0.180 4.180 5 C -0.154 4.154 6 H 0.105 0.895 7 C 0.091 3.909 8 N -0.678 5.678 9 C 0.120 3.880 10 C 0.023 3.977 11 C -0.501 4.501 12 H 0.053 0.947 13 C 0.024 3.976 14 N -0.910 5.910 15 Si 0.948 3.052 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.284 1.284 19 C -0.178 4.178 20 C -0.168 4.168 21 H 0.061 0.939 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.015 0.985 27 H 0.068 0.932 28 H 0.340 0.660 29 H 0.002 0.998 30 H 0.045 0.955 31 H 0.258 0.742 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.951 5.460 -4.866 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.160 4.160 3 H 0.123 0.877 4 C -0.217 4.217 5 C -0.173 4.173 6 H 0.123 0.877 7 C -0.038 4.038 8 N -0.308 5.308 9 C -0.009 4.009 10 C 0.023 3.977 11 C -0.539 4.539 12 H 0.071 0.929 13 C -0.175 4.175 14 N -0.548 5.548 15 Si 0.774 3.226 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.210 1.210 19 C -0.215 4.215 20 C -0.206 4.206 21 H 0.079 0.921 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.121 0.879 25 H 0.105 0.895 26 H 0.033 0.967 27 H 0.087 0.913 28 H 0.158 0.842 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.136 5.630 -4.306 13.200 hybrid contribution 1.524 -0.841 -1.007 2.011 sum -9.612 4.789 -5.313 11.981 Atomic orbital electron populations 1.21362 0.91462 1.02527 1.02239 1.22461 0.96193 0.94153 1.03211 0.87745 1.23282 1.02633 1.02027 0.93709 1.22332 0.98273 1.02980 0.93701 0.87691 1.21494 0.93859 0.93632 0.94813 1.60437 1.30947 1.06196 1.33225 1.21161 0.88382 0.95851 0.95545 1.18921 0.98253 0.94560 0.86014 1.20720 0.95006 1.01446 1.36773 0.92903 1.25672 0.96237 0.99395 0.96243 1.70107 1.06218 1.33660 1.44855 0.85663 0.78172 0.80954 0.77805 1.19098 1.20781 1.21008 1.22848 0.93954 1.00501 1.04195 1.22459 0.93407 0.98677 1.06072 0.92051 0.90902 0.92310 0.87942 0.89509 0.96729 0.91322 0.84220 0.97940 0.93614 0.93259 0.89632 0.90872 0.92502 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 10.19 71.98 0.73 -1.34 16 2 C -0.14 -3.08 6.12 -10.79 -0.07 -3.15 16 3 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 4 C -0.18 -4.27 9.83 30.62 0.30 -3.97 16 5 C -0.15 -4.23 5.67 -10.77 -0.06 -4.29 16 6 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 7 C 0.09 3.01 5.96 86.30 0.51 3.52 16 8 N -0.68 -27.19 6.47 -513.89 -3.33 -30.52 16 9 C 0.12 5.51 5.54 86.30 0.48 5.99 16 10 C 0.02 1.16 1.56 -52.93 -0.08 1.08 16 11 C -0.50 -27.29 8.32 25.60 0.21 -27.07 16 12 H 0.05 2.89 7.82 -2.91 -0.02 2.87 16 13 C 0.02 1.34 5.39 84.65 0.46 1.79 16 14 N -0.91 -52.28 12.95 21.45 0.28 -52.00 16 15 Si 0.95 43.44 29.55 68.60 2.03 45.46 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 C -0.18 -7.92 9.96 30.62 0.30 -7.61 16 20 C -0.17 -8.12 9.46 30.62 0.29 -7.83 16 21 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.06 0.99 7.90 -2.39 -0.02 0.97 16 24 H 0.10 2.18 8.05 -2.39 -0.02 2.17 16 25 H 0.09 2.13 8.03 -2.39 -0.02 2.11 16 26 H 0.01 0.50 7.88 -2.39 -0.02 0.48 16 27 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.34 14.45 8.30 -89.69 -0.74 13.71 16 29 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.05 1.98 8.08 -2.38 -0.02 1.96 16 31 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 32 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 33 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.06 2.96 8.14 -2.38 -0.02 2.94 16 35 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -57.72 294.07 2.35 -55.36 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.29 Total: 24.57 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 3.08 Total: -42.89 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.05 Total: -82.52 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -57.72 2.35 -55.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166991551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.679 kcal (2) G-P(sol) polarization free energy of solvation -57.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds