Wall clock time and date at job start Thu Apr 9 2020 11:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31498 * 1 3 3 Si 1.86794 * 119.99930 * 2 1 4 4 H 1.48502 * 109.47018 * 239.99731 * 3 2 1 5 5 H 1.48496 * 109.47397 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46837 * 120.00374 * 3 2 1 7 7 C 1.38735 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00356 * 179.97438 * 7 2 1 9 9 O 1.34787 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.35551 * 117.00136 * 185.05925 * 9 7 2 11 11 C 1.39161 * 119.90513 * 354.38428 * 10 9 7 12 12 C 1.37570 * 120.13432 * 179.71858 * 11 10 9 13 13 C 1.40076 * 119.93272 * 0.57357 * 12 11 10 14 14 C 1.46851 * 120.08578 * 179.72579 * 13 12 11 15 15 O 1.21305 * 119.99792 * 179.97438 * 14 13 12 16 16 C 1.40058 * 119.81827 * 359.69669 * 13 12 11 17 17 C 1.37773 * 119.86409 * 0.02562 * 16 13 12 18 18 F 1.35107 * 119.96740 * 180.02562 * 17 16 13 19 19 H 0.96995 * 120.00402 * 359.97438 * 1 2 3 20 20 H 1.08001 * 119.93421 * 359.97219 * 11 10 9 21 21 H 1.07993 * 120.03419 * 180.24606 * 12 11 10 22 22 H 1.07994 * 120.00407 * 359.97114 * 14 13 12 23 23 H 1.07997 * 120.06391 * 180.02562 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2489 1.6177 0.0000 4 1 3.1027 1.6963 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0087 -1.2015 -0.0005 8 1 3.0886 -1.2015 -0.0010 9 8 1.3347 -2.3688 -0.0005 10 6 2.0689 -3.5033 0.1054 11 6 3.4587 -3.4343 0.0899 12 6 4.2085 -4.5821 0.2029 13 6 3.5717 -5.8241 0.3219 14 6 4.3688 -7.0521 0.4367 15 8 3.8157 -8.1267 0.5400 16 6 2.1728 -5.8913 0.3315 17 6 1.4297 -4.7362 0.2236 18 9 0.0801 -4.7987 0.2332 19 1 -0.4850 0.8400 0.0004 20 1 3.9498 -2.4772 -0.0070 21 1 5.2870 -4.5263 0.1947 22 1 5.4474 -6.9985 0.4290 23 1 1.6777 -6.8467 0.4234 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229780675.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:16 Heat of formation + Delta-G solvation = -85.025382 kcal Electronic energy + Delta-G solvation = -12955.709115 eV Core-core repulsion = 10263.601446 eV Total energy + Delta-G solvation = -2692.107670 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 210.048 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.89939 -39.35441 -38.37411 -36.27926 -32.68983 -30.09324 -29.59701 -26.00830 -23.70125 -22.15577 -20.59988 -18.36601 -17.51293 -16.68698 -15.63295 -15.02418 -14.91291 -14.67954 -14.45752 -13.91987 -13.69959 -13.46451 -13.31941 -12.14602 -11.95513 -11.80435 -11.35644 -11.03267 -10.94176 -10.65261 -9.82750 -9.35684 -9.15215 -8.34976 -7.51599 -6.79721 -4.34537 1.23037 1.88324 2.86338 2.95421 3.01120 3.04347 3.68967 4.26467 4.58531 4.73928 4.82823 5.18849 5.41427 5.50982 5.73575 5.90910 6.32283 6.54842 6.68394 6.74648 6.91027 6.99968 7.48823 7.61810 7.88826 8.61913 9.23432 10.35203 Molecular weight = 210.05amu Principal moments of inertia in cm(-1) A = 0.053382 B = 0.008229 C = 0.007154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.398563 B = 3401.812467 C = 3913.210942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.043 3.957 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.395 4.395 8 H 0.102 0.898 9 O -0.143 6.143 10 C 0.143 3.857 11 C -0.234 4.234 12 C -0.021 4.021 13 C -0.283 4.283 14 C 0.390 3.610 15 O -0.494 6.494 16 C -0.046 4.046 17 C 0.005 3.995 18 F -0.142 7.142 19 H 0.279 0.721 20 H 0.141 0.859 21 H 0.124 0.876 22 H 0.091 0.909 23 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.952 -2.749 0.187 8.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.165 4.165 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.470 4.470 8 H 0.120 0.880 9 O -0.042 6.042 10 C 0.084 3.916 11 C -0.254 4.254 12 C -0.040 4.040 13 C -0.285 4.285 14 C 0.254 3.746 15 O -0.371 6.371 16 C -0.065 4.065 17 C -0.016 4.016 18 F -0.121 7.121 19 H 0.089 0.911 20 H 0.158 0.842 21 H 0.141 0.859 22 H 0.107 0.893 23 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.120 -3.041 0.214 7.745 hybrid contribution 0.223 1.002 -0.031 1.027 sum 7.343 -2.038 0.183 7.623 Atomic orbital electron populations 1.70017 1.06319 1.28917 1.41669 1.25520 0.95980 0.99434 0.95581 0.85627 0.78777 0.78648 0.79593 1.19020 1.19891 1.19018 1.21573 0.92323 0.80240 1.52851 0.88041 1.83944 1.34855 1.11728 1.73695 1.19632 0.91041 0.87046 0.93848 1.20920 0.92300 0.99717 1.12437 1.20999 0.98962 0.91022 0.93012 1.20040 0.93510 0.95501 1.19454 1.23622 0.94193 0.86672 0.70157 1.90469 1.76577 1.31956 1.38131 1.20862 0.93418 0.96368 0.95890 1.16727 0.77156 0.91995 1.15701 1.91440 1.28648 1.97028 1.94998 0.91110 0.84180 0.85852 0.89282 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.17 13.67 55.48 0.76 -22.41 14 2 C 0.04 1.10 5.49 -17.51 -0.10 1.01 14 3 Si 0.95 18.69 29.55 -169.99 -5.02 13.66 14 4 H -0.27 -5.02 7.11 56.52 0.40 -4.62 14 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 14 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 14 7 C -0.40 -10.21 9.48 30.92 0.29 -9.92 14 8 H 0.10 2.32 5.18 -52.49 -0.27 2.05 14 9 O -0.14 -3.92 9.60 0.78 0.01 -3.91 14 10 C 0.14 3.34 6.66 -38.81 -0.26 3.09 14 11 C -0.23 -4.55 9.14 -39.48 -0.36 -4.91 14 12 C -0.02 -0.34 9.78 -39.14 -0.38 -0.72 14 13 C -0.28 -4.79 5.87 -105.04 -0.62 -5.41 14 14 C 0.39 5.73 11.44 34.21 0.39 6.12 14 15 O -0.49 -8.96 17.16 5.54 0.09 -8.86 14 16 C -0.05 -0.89 9.56 -39.07 -0.37 -1.26 14 17 C 0.00 0.10 7.30 -39.32 -0.29 -0.19 14 18 F -0.14 -3.36 17.11 2.25 0.04 -3.32 14 19 H 0.28 7.00 8.31 -40.82 -0.34 6.66 14 20 H 0.14 2.59 5.62 -52.49 -0.29 2.29 14 21 H 0.12 1.44 8.06 -52.49 -0.42 1.02 14 22 H 0.09 0.91 8.06 -52.49 -0.42 0.49 14 23 H 0.13 2.44 7.64 -52.49 -0.40 2.04 14 LS Contribution 226.01 15.07 3.41 3.41 Total: -1.00 -29.86 226.01 -3.36 -33.21 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -0.95 Total: 0.41 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.69 Total: -12.19 kcal Atomic # 7 Polarization: -23.17 SS G_CDS: 0.76 Total: -22.41 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.10 Total: -12.77 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.04 Total: -3.32 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.66 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -29.86 -3.36 -33.21 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229780675.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.812 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds