Wall clock time and date at job start Thu Apr 9 2020 11:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 120.00489 * 2 1 4 4 C 1.53006 * 109.47184 * 124.99925 * 3 2 1 5 5 N 1.46898 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.46846 * 111.00018 * 294.20961 * 5 4 3 7 7 C 1.53033 * 109.52460 * 174.16134 * 6 5 4 8 8 C 1.53124 * 109.27811 * 59.18358 * 7 6 5 9 9 C 1.50696 * 109.57409 * 182.41121 * 8 7 6 10 10 H 1.07998 * 120.00145 * 119.71641 * 9 8 7 11 11 C 1.37873 * 119.99794 * 299.70905 * 9 8 7 12 12 N 1.31510 * 120.00487 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99779 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47475 * 90.00052 * 13 11 9 15 15 H 1.48502 * 109.47098 * 210.00447 * 13 11 9 16 16 H 1.48499 * 109.47360 * 329.99891 * 13 11 9 17 17 C 1.53125 * 109.15751 * 302.34732 * 8 7 6 18 18 C 1.46851 * 110.99682 * 170.00115 * 5 4 3 19 19 H 1.07999 * 119.99870 * 359.97438 * 1 2 3 20 20 H 1.08003 * 120.00347 * 179.97438 * 1 2 3 21 21 H 1.07999 * 119.99870 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.46665 * 5.00314 * 3 2 1 23 23 H 1.08993 * 109.47304 * 244.99869 * 3 2 1 24 24 H 1.09001 * 109.46801 * 300.00442 * 4 3 2 25 25 H 1.09001 * 109.46998 * 60.00038 * 4 3 2 26 26 H 1.09002 * 109.46555 * 294.18280 * 6 5 4 27 27 H 1.09001 * 109.46296 * 54.14881 * 6 5 4 28 28 H 1.08997 * 109.50475 * 299.23909 * 7 6 5 29 29 H 1.09002 * 109.50799 * 179.12007 * 7 6 5 30 30 H 1.08994 * 109.52258 * 62.24925 * 8 7 6 31 31 H 0.97001 * 120.00418 * 180.02562 * 12 11 9 32 32 H 1.09005 * 109.50073 * 297.71107 * 17 8 7 33 33 H 1.08991 * 109.50379 * 177.59621 * 17 8 7 34 34 H 1.08989 * 109.46428 * 305.85572 * 18 5 4 35 35 H 1.09002 * 109.45912 * 65.83533 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1817 5 7 3.7692 2.6053 1.1820 6 6 4.6401 2.7107 0.0043 7 6 5.2757 4.1021 -0.0389 8 6 6.0865 4.3275 1.2404 9 6 6.6670 5.7182 1.2318 10 1 6.4066 6.4168 2.0131 11 6 7.5305 6.0985 0.2265 12 7 7.8472 5.2479 -0.7252 13 14 8.2506 7.8221 0.2163 14 1 9.5266 7.8301 0.9759 15 1 8.5057 8.2437 -1.1846 16 1 7.2918 8.7630 0.8494 17 6 5.1666 4.1644 2.4536 18 6 4.5341 2.7712 2.4246 19 1 -0.5400 0.9353 0.0004 20 1 -0.5401 -0.9353 -0.0004 21 1 1.8499 -0.9353 -0.0004 22 1 1.3586 2.1316 0.0896 23 1 2.6213 1.4025 -0.9313 24 1 2.4773 1.2354 2.1130 25 1 3.7400 0.5063 1.0921 26 1 5.4236 1.9552 0.0631 27 1 4.0504 2.5527 -0.8987 28 1 4.4933 4.8575 -0.1117 29 1 5.9341 4.1748 -0.9045 30 1 6.8931 3.5964 1.2939 31 1 8.4550 5.5154 -1.4322 32 1 4.3825 4.9208 2.4201 33 1 5.7470 4.2815 3.3687 34 1 3.8676 2.6570 3.2793 35 1 5.3182 2.0155 2.4719 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260405424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:37 Heat of formation + Delta-G solvation = 3.816475 kcal Electronic energy + Delta-G solvation = -13919.971183 eV Core-core repulsion = 11724.561142 eV Total energy + Delta-G solvation = -2195.410041 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.35681 -35.42487 -33.47171 -31.35868 -29.75646 -28.39713 -25.43275 -22.84532 -22.00242 -20.79235 -19.69796 -18.52531 -16.35104 -15.48540 -15.14204 -14.44182 -14.25471 -13.92760 -13.20734 -12.96117 -12.57409 -12.42804 -12.17722 -11.51661 -11.39122 -11.00637 -10.87741 -10.85585 -10.59633 -10.37748 -10.16103 -9.93400 -9.44682 -9.25924 -8.91505 -8.63667 -8.25767 -7.69685 -5.93884 -3.99118 2.26840 3.33533 3.40175 3.43972 4.43883 4.48619 5.03758 5.18273 5.34151 5.36667 5.47352 5.76554 5.77318 5.89326 5.94291 6.08468 6.18247 6.24225 6.32077 6.36513 6.59266 6.67660 6.70194 6.78877 6.90381 7.12894 7.21697 7.48724 7.67074 7.75663 7.88115 8.09348 8.20156 8.52350 9.04684 9.65140 11.12362 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.064365 B = 0.006403 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.915205 B = 4371.989767 C = 4584.784291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.094 4.094 4 C 0.060 3.940 5 N -0.537 5.537 6 C 0.054 3.946 7 C -0.104 4.104 8 C 0.047 3.953 9 C -0.510 4.510 10 H 0.054 0.946 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.889 3.111 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.275 1.275 17 C -0.106 4.106 18 C 0.061 3.939 19 H 0.096 0.904 20 H 0.093 0.907 21 H 0.105 0.895 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.026 0.974 26 H 0.021 0.979 27 H 0.057 0.943 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.020 0.980 31 H 0.259 0.741 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.522 -8.150 1.658 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.164 4.164 3 C -0.131 4.131 4 C -0.068 4.068 5 N -0.262 5.262 6 C -0.073 4.073 7 C -0.143 4.143 8 C 0.029 3.971 9 C -0.548 4.548 10 H 0.072 0.928 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.718 3.282 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.199 1.199 17 C -0.144 4.144 18 C -0.067 4.067 19 H 0.114 0.886 20 H 0.111 0.889 21 H 0.123 0.877 22 H 0.093 0.907 23 H 0.093 0.907 24 H 0.085 0.915 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -9.744 -7.769 1.475 12.549 hybrid contribution 1.027 0.152 -0.046 1.039 sum -8.717 -7.616 1.429 11.664 Atomic orbital electron populations 1.23812 0.95957 1.01581 1.02497 1.23005 0.96034 0.98644 0.98745 1.20804 0.98358 0.94876 0.99064 1.21989 0.95709 0.91000 0.98147 1.61997 1.29292 1.31591 1.03357 1.22325 0.93490 1.00144 0.91312 1.21661 0.98127 0.91480 1.03001 1.18688 0.92265 0.96558 0.89636 1.21221 1.26128 0.98074 1.09372 0.92758 1.24966 0.96384 0.97058 0.95614 1.69877 1.35402 1.34684 1.13252 0.86636 0.79435 0.85062 0.77102 1.20824 1.21305 1.19948 1.21680 0.98846 0.93842 1.00066 1.22103 0.95030 0.98752 0.90806 0.88568 0.88881 0.87745 0.90728 0.90724 0.91513 0.95579 0.96081 0.92423 0.93845 0.89012 0.96212 0.93135 0.92495 0.93235 0.92529 0.95921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.06 14.32 29.02 0.42 -1.65 16 2 C -0.15 -1.65 9.52 -36.03 -0.34 -2.00 16 3 C -0.09 -1.25 5.59 -27.88 -0.16 -1.41 16 4 C 0.06 0.89 4.94 -3.82 -0.02 0.88 16 5 N -0.54 -9.87 4.66 -234.67 -1.09 -10.96 16 6 C 0.05 1.09 5.29 -3.84 -0.02 1.07 16 7 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 8 C 0.05 1.19 2.16 -91.64 -0.20 1.00 16 9 C -0.51 -14.21 8.56 -34.44 -0.29 -14.51 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 12 N -0.89 -25.71 11.37 55.43 0.63 -25.08 16 13 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.11 -2.29 5.32 -26.65 -0.14 -2.44 16 18 C 0.06 1.13 5.46 -3.83 -0.02 1.11 16 19 H 0.10 0.96 7.84 -52.49 -0.41 0.55 16 20 H 0.09 0.81 8.06 -52.48 -0.42 0.38 16 21 H 0.10 1.08 8.06 -52.49 -0.42 0.66 16 22 H 0.07 1.03 7.79 -51.93 -0.40 0.62 16 23 H 0.07 1.04 6.43 -51.93 -0.33 0.71 16 24 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 25 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.06 6.21 -51.93 -0.32 0.74 16 28 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.93 8.01 -51.94 -0.42 0.51 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 278.07 15.07 4.19 4.19 Total: -1.00 -28.24 278.07 -8.27 -36.51 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -5.97 Total: -2.14 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -1.01 Total: -18.99 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.46 Total: -36.04 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.24 -8.27 -36.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260405424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.324 kcal (2) G-P(sol) polarization free energy of solvation -28.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds