Wall clock time and date at job start Thu Apr 9 2020 11:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 120.00489 * 2 1 4 4 C 1.53006 * 109.47184 * 124.99925 * 3 2 1 5 5 N 1.46898 * 109.47006 * 180.02562 * 4 3 2 6 6 C 1.46846 * 111.00018 * 294.20961 * 5 4 3 7 7 C 1.53033 * 109.52460 * 174.16134 * 6 5 4 8 8 C 1.53124 * 109.27811 * 59.18358 * 7 6 5 9 9 C 1.50696 * 109.57409 * 182.41121 * 8 7 6 10 10 H 1.07998 * 120.00145 * 119.71641 * 9 8 7 11 11 C 1.37873 * 119.99794 * 299.70905 * 9 8 7 12 12 N 1.31510 * 120.00487 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99779 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47475 * 90.00052 * 13 11 9 15 15 H 1.48502 * 109.47098 * 210.00447 * 13 11 9 16 16 H 1.48499 * 109.47360 * 329.99891 * 13 11 9 17 17 C 1.53125 * 109.15751 * 302.34732 * 8 7 6 18 18 C 1.46851 * 110.99682 * 170.00115 * 5 4 3 19 19 H 1.07999 * 119.99870 * 359.97438 * 1 2 3 20 20 H 1.08003 * 120.00347 * 179.97438 * 1 2 3 21 21 H 1.07999 * 119.99870 * 180.02562 * 2 1 3 22 22 H 1.09001 * 109.46665 * 5.00314 * 3 2 1 23 23 H 1.08993 * 109.47304 * 244.99869 * 3 2 1 24 24 H 1.09001 * 109.46801 * 300.00442 * 4 3 2 25 25 H 1.09001 * 109.46998 * 60.00038 * 4 3 2 26 26 H 1.09002 * 109.46555 * 294.18280 * 6 5 4 27 27 H 1.09001 * 109.46296 * 54.14881 * 6 5 4 28 28 H 1.08997 * 109.50475 * 299.23909 * 7 6 5 29 29 H 1.09002 * 109.50799 * 179.12007 * 7 6 5 30 30 H 1.08994 * 109.52258 * 62.24925 * 8 7 6 31 31 H 0.97001 * 120.00418 * 180.02562 * 12 11 9 32 32 H 1.09005 * 109.50073 * 297.71107 * 17 8 7 33 33 H 1.08991 * 109.50379 * 177.59621 * 17 8 7 34 34 H 1.08989 * 109.46428 * 305.85572 * 18 5 4 35 35 H 1.09002 * 109.45912 * 65.83533 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1817 5 7 3.7692 2.6053 1.1820 6 6 4.6401 2.7107 0.0043 7 6 5.2757 4.1021 -0.0389 8 6 6.0865 4.3275 1.2404 9 6 6.6670 5.7182 1.2318 10 1 6.4066 6.4168 2.0131 11 6 7.5305 6.0985 0.2265 12 7 7.8472 5.2479 -0.7252 13 14 8.2506 7.8221 0.2163 14 1 9.5266 7.8301 0.9759 15 1 8.5057 8.2437 -1.1846 16 1 7.2918 8.7630 0.8494 17 6 5.1666 4.1644 2.4536 18 6 4.5341 2.7712 2.4246 19 1 -0.5400 0.9353 0.0004 20 1 -0.5401 -0.9353 -0.0004 21 1 1.8499 -0.9353 -0.0004 22 1 1.3586 2.1316 0.0896 23 1 2.6213 1.4025 -0.9313 24 1 2.4773 1.2354 2.1130 25 1 3.7400 0.5063 1.0921 26 1 5.4236 1.9552 0.0631 27 1 4.0504 2.5527 -0.8987 28 1 4.4933 4.8575 -0.1117 29 1 5.9341 4.1748 -0.9045 30 1 6.8931 3.5964 1.2939 31 1 8.4550 5.5154 -1.4322 32 1 4.3825 4.9208 2.4201 33 1 5.7470 4.2815 3.3687 34 1 3.8676 2.6570 3.2793 35 1 5.3182 2.0155 2.4719 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260405424.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:37 Heat of formation + Delta-G solvation = -12.426827 kcal Electronic energy + Delta-G solvation = -13920.675545 eV Core-core repulsion = 11724.561142 eV Total energy + Delta-G solvation = -2196.114404 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.91856 -36.72952 -35.10439 -33.11636 -31.47878 -29.74502 -27.25342 -24.42795 -23.69148 -22.26590 -20.63837 -20.28776 -18.44095 -16.92616 -16.40437 -16.30760 -15.49033 -15.36596 -14.84827 -14.46666 -14.25635 -14.07626 -13.61038 -13.03264 -12.83475 -12.79416 -12.64718 -12.29112 -11.98649 -11.93801 -11.84415 -11.71643 -11.32175 -10.79494 -10.68240 -10.38837 -10.11934 -9.17332 -8.07531 -6.21147 1.41442 1.42246 1.44214 1.52744 2.44412 3.06639 3.19410 4.06580 4.08131 4.19861 4.32972 4.37031 4.41122 4.54986 4.60408 4.70383 4.77449 4.87991 4.96200 5.00344 5.08637 5.16135 5.20912 5.29305 5.35323 5.56800 5.63300 5.78733 5.94023 6.00786 6.04328 6.31126 6.36265 6.41375 6.90539 7.46734 8.97216 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.064365 B = 0.006403 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.915205 B = 4371.989767 C = 4584.784291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.160 4.160 3 C -0.088 4.088 4 C 0.061 3.939 5 N -0.545 5.545 6 C 0.067 3.933 7 C -0.096 4.096 8 C 0.042 3.958 9 C -0.534 4.534 10 H 0.051 0.949 11 C 0.012 3.988 12 N -0.919 5.919 13 Si 0.954 3.046 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.269 1.269 17 C -0.100 4.100 18 C 0.065 3.935 19 H 0.097 0.903 20 H 0.112 0.888 21 H 0.115 0.885 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.029 0.971 26 H 0.012 0.988 27 H 0.075 0.925 28 H 0.030 0.970 29 H 0.061 0.939 30 H -0.013 1.013 31 H 0.260 0.740 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.856 -8.654 2.239 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.179 4.179 3 C -0.126 4.126 4 C -0.066 4.066 5 N -0.270 5.270 6 C -0.061 4.061 7 C -0.134 4.134 8 C 0.024 3.976 9 C -0.572 4.572 10 H 0.069 0.931 11 C -0.186 4.186 12 N -0.559 5.559 13 Si 0.780 3.220 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.193 1.193 17 C -0.138 4.138 18 C -0.062 4.062 19 H 0.115 0.885 20 H 0.130 0.870 21 H 0.133 0.867 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.048 0.952 26 H 0.030 0.970 27 H 0.093 0.907 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.005 0.995 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -11.090 -8.282 2.067 13.994 hybrid contribution 1.409 0.293 -0.221 1.456 sum -9.681 -7.989 1.846 12.686 Atomic orbital electron populations 1.24016 0.95658 1.02592 1.00338 1.22933 0.96395 0.97924 1.00633 1.20719 0.97940 0.96063 0.97856 1.22081 0.95672 0.89114 0.99734 1.61962 1.28561 1.34082 1.02353 1.22077 0.93690 0.97065 0.93243 1.21429 0.97126 0.93771 1.01112 1.18676 0.92259 0.94559 0.92128 1.21596 1.26813 0.99292 1.09518 0.93074 1.25750 0.96755 1.00911 0.95224 1.70017 1.35736 1.36432 1.13670 0.85618 0.78745 0.80422 0.77238 1.20168 1.20843 1.19326 1.21550 0.98028 0.95883 0.98329 1.22051 0.95597 0.96460 0.92121 0.88478 0.86977 0.86742 0.91243 0.91743 0.89889 0.95224 0.96985 0.90671 0.95083 0.92089 0.99499 0.93082 0.93022 0.92781 0.89386 0.96180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.32 14.32 67.79 0.97 -2.35 16 2 C -0.16 -3.22 9.52 25.65 0.24 -2.98 16 3 C -0.09 -2.18 5.59 29.85 0.17 -2.02 16 4 C 0.06 1.69 4.94 86.31 0.43 2.12 16 5 N -0.54 -19.21 4.66 -896.37 -4.17 -23.39 16 6 C 0.07 2.68 5.29 86.32 0.46 3.14 16 7 C -0.10 -4.74 5.12 30.65 0.16 -4.58 16 8 C 0.04 2.20 2.16 -11.46 -0.02 2.18 16 9 C -0.53 -30.37 8.56 25.60 0.22 -30.15 16 10 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 11 C 0.01 0.67 5.31 84.65 0.45 1.12 16 12 N -0.92 -54.15 11.37 21.45 0.24 -53.90 16 13 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 14 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 C -0.10 -4.29 5.32 30.65 0.16 -4.12 16 18 C 0.07 2.33 5.46 86.32 0.47 2.80 16 19 H 0.10 1.68 7.84 -2.91 -0.02 1.66 16 20 H 0.11 1.55 8.06 -2.91 -0.02 1.52 16 21 H 0.11 2.07 8.06 -2.91 -0.02 2.05 16 22 H 0.07 1.78 7.79 -2.39 -0.02 1.76 16 23 H 0.06 1.71 6.43 -2.39 -0.02 1.69 16 24 H 0.08 2.05 7.99 -2.39 -0.02 2.03 16 25 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 26 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.08 2.73 6.21 -2.39 -0.01 2.71 16 28 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 3.37 6.17 -2.39 -0.01 3.36 16 30 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.05 2.24 8.14 -2.38 -0.02 2.23 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.09 2.62 8.01 -2.39 -0.02 2.60 16 35 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -60.79 278.07 2.82 -57.97 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.02 Total: 7.71 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 3.70 Total: -34.84 kcal Atomic # 7 Polarization: -73.36 SS G_CDS: -3.93 Total: -77.29 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -60.79 2.82 -57.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260405424.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.545 kcal (2) G-P(sol) polarization free energy of solvation -60.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds