Wall clock time and date at job start Thu Apr 9 2020 11:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.48486 * 110.99887 * 285.61458 * 10 9 7 12 12 C 1.55434 * 105.21205 * 204.02891 * 11 10 9 13 13 H 1.09000 * 108.86149 * 260.44261 * 12 11 10 14 14 C 1.51558 * 107.54458 * 141.81371 * 12 11 10 15 15 C 1.52224 * 112.91654 * 209.78234 * 14 12 11 16 16 C 1.53479 * 107.95686 * 58.59527 * 15 14 12 17 17 C 1.52534 * 107.50686 * 291.09644 * 16 15 14 18 18 C 1.49322 * 113.34163 * 54.37478 * 17 16 15 19 19 H 1.09000 * 105.81618 * 211.77322 * 18 17 16 20 20 C 1.48999 * 111.00015 * 170.00106 * 10 9 7 21 21 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 22 22 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 23 23 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 24 24 H 1.09004 * 110.29577 * 322.96093 * 11 10 9 25 25 H 1.08997 * 110.29432 * 85.09535 * 11 10 9 26 26 H 1.09004 * 108.79062 * 88.89953 * 14 12 11 27 27 H 1.09000 * 108.78905 * 330.67110 * 14 12 11 28 28 H 1.08994 * 109.76766 * 298.97445 * 15 14 12 29 29 H 1.09008 * 109.80497 * 178.23018 * 15 14 12 30 30 H 1.09009 * 109.84850 * 171.60018 * 16 15 14 31 31 H 1.09002 * 109.85633 * 50.60268 * 16 15 14 32 32 H 1.09007 * 108.70795 * 293.37545 * 17 16 15 33 33 H 1.09000 * 108.61027 * 175.30545 * 17 16 15 34 34 H 1.09007 * 110.69503 * 278.40595 * 20 10 9 35 35 H 1.08998 * 110.69980 * 41.43323 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 7 2.2057 -3.6157 0.0164 11 6 2.8350 -3.7836 -1.3180 12 6 3.2914 -5.2685 -1.3698 13 1 4.3574 -5.3174 -1.1476 14 6 3.0425 -5.7741 -2.7766 15 6 2.7435 -7.2659 -2.8261 16 6 1.5069 -7.5297 -1.9561 17 6 1.9092 -7.2946 -0.5036 18 6 2.5129 -5.9495 -0.2673 19 1 3.2347 -6.0852 0.5381 20 6 1.5114 -4.9107 0.2636 21 1 -0.4850 0.8401 -0.0041 22 1 0.6241 -2.5528 0.9015 23 1 0.6247 -2.5609 -0.8785 24 1 2.1092 -3.5834 -2.1062 25 1 3.6943 -3.1203 -1.4168 26 1 3.9253 -5.5727 -3.3835 27 1 2.1968 -5.2322 -3.2000 28 1 3.5941 -7.8255 -2.4371 29 1 2.5423 -7.5684 -3.8539 30 1 1.1758 -8.5601 -2.0862 31 1 0.7058 -6.8447 -2.2338 32 1 2.6310 -8.0579 -0.2128 33 1 1.0232 -7.3953 0.1234 34 1 1.3346 -5.0557 1.3294 35 1 0.5740 -4.9572 -0.2907 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306191981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:48 Heat of formation + Delta-G solvation = -35.873783 kcal Electronic energy + Delta-G solvation = -14249.024445 eV Core-core repulsion = 12051.893304 eV Total energy + Delta-G solvation = -2197.131140 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.94153 -37.06922 -34.83605 -32.94011 -32.05300 -28.60840 -27.82521 -25.06692 -23.12128 -22.73561 -21.80843 -19.25387 -18.49751 -17.14368 -16.80384 -15.95080 -15.64377 -15.23042 -14.95222 -14.43943 -14.22605 -13.72961 -13.64387 -13.42041 -12.98836 -12.68968 -12.58280 -12.44776 -12.22786 -12.09652 -11.87533 -11.61658 -11.38955 -11.05943 -10.86766 -10.76229 -10.63954 -9.22355 -8.24782 -6.36268 1.37739 1.41971 1.50145 2.37475 3.06800 3.34616 3.55941 3.68967 3.93812 4.12151 4.22330 4.32260 4.51165 4.53826 4.58429 4.67423 4.76519 4.84267 4.88864 4.97528 5.05460 5.07729 5.15160 5.19776 5.20782 5.29460 5.43036 5.44465 5.56661 5.60503 5.64170 5.97417 6.22094 6.47504 6.78965 7.33876 8.86527 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.057515 B = 0.007271 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.713460 B = 3849.758394 C = 4023.460168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.200 3.800 10 N -0.526 5.526 11 C 0.046 3.954 12 C -0.072 4.072 13 H 0.081 0.919 14 C -0.111 4.111 15 C -0.110 4.110 16 C -0.119 4.119 17 C -0.099 4.099 18 C -0.074 4.074 19 H 0.060 0.940 20 C 0.033 3.967 21 H 0.266 0.734 22 H 0.000 1.000 23 H -0.038 1.038 24 H 0.020 0.980 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 -14.754 -4.517 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.073 3.927 10 N -0.249 5.249 11 C -0.082 4.082 12 C -0.091 4.091 13 H 0.100 0.900 14 C -0.149 4.149 15 C -0.148 4.148 16 C -0.157 4.157 17 C -0.137 4.137 18 C -0.094 4.094 19 H 0.079 0.921 20 C -0.095 4.095 21 H 0.075 0.925 22 H 0.018 0.982 23 H -0.020 1.020 24 H 0.038 0.962 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 5.906 -14.489 -4.067 16.166 hybrid contribution -0.773 1.304 -0.399 1.568 sum 5.133 -13.184 -4.466 14.836 Atomic orbital electron populations 1.70086 1.07817 1.28136 1.51518 1.25989 0.95830 1.03413 0.94532 0.85375 0.78158 0.77526 0.79200 1.19161 1.20437 1.19198 1.21413 0.93541 0.91187 1.50546 0.92223 1.19496 0.90246 0.89720 0.93224 1.65403 1.28940 1.02801 1.27779 1.23434 0.97941 0.97114 0.89706 1.21118 1.00060 0.92445 0.95489 0.90030 1.21202 1.01485 0.97381 0.94784 1.21448 0.98326 0.94621 1.00356 1.21564 0.97575 1.01690 0.94834 1.20597 1.00991 0.94520 0.97611 1.20254 0.96727 0.94424 0.97949 0.92146 1.23246 0.95853 0.90161 1.00216 0.92525 0.98203 1.02014 0.96202 0.92127 0.91053 0.94009 0.90540 0.90713 0.89836 0.93805 0.90081 0.91896 0.90869 0.95931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.24 13.29 21.45 0.28 -57.96 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -31.75 8.97 25.60 0.23 -31.52 16 8 H 0.06 3.52 7.81 -2.91 -0.02 3.50 16 9 C 0.20 11.46 4.61 85.55 0.39 11.85 16 10 N -0.53 -24.76 5.32 -884.10 -4.70 -29.47 16 11 C 0.05 1.91 5.66 86.83 0.49 2.40 16 12 C -0.07 -2.19 3.23 -11.02 -0.04 -2.22 16 13 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.11 -2.79 5.26 29.87 0.16 -2.63 16 15 C -0.11 -2.14 5.98 30.50 0.18 -1.95 16 16 C -0.12 -2.46 6.07 30.60 0.19 -2.27 16 17 C -0.10 -2.22 5.40 29.27 0.16 -2.07 16 18 C -0.07 -2.19 2.54 -12.31 -0.03 -2.22 16 19 H 0.06 1.75 8.02 -2.39 -0.02 1.73 16 20 C 0.03 1.29 5.82 86.15 0.50 1.79 16 21 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 22 H 0.00 -0.01 8.08 -2.39 -0.02 -0.03 16 23 H -0.04 -2.34 7.74 -2.39 -0.02 -2.36 16 24 H 0.02 0.88 6.71 -2.38 -0.02 0.86 16 25 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.04 1.21 7.14 -2.39 -0.02 1.19 16 28 H 0.08 1.29 8.09 -2.39 -0.02 1.27 16 29 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.04 1.07 8.10 -2.39 -0.02 1.05 16 32 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.06 1.40 7.83 -2.39 -0.02 1.38 16 34 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 35 H 0.02 0.91 8.03 -2.39 -0.02 0.89 16 Total: -1.00 -66.74 271.31 1.33 -65.42 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 1.03 Total: 2.74 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 2.69 Total: -28.37 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -4.42 Total: -87.42 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -66.74 1.33 -65.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306191981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.541 kcal (2) G-P(sol) polarization free energy of solvation -66.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds