Wall clock time and date at job start Thu Apr 9 2020 11:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.06946 * 2 1 4 4 C 1.55332 * 109.92093 * 238.78228 * 2 1 3 5 5 C 1.53666 * 101.78319 * 263.11348 * 4 2 1 6 6 H 1.09003 * 111.11172 * 78.51017 * 5 4 2 7 7 C 1.51927 * 115.22482 * 205.89337 * 5 4 2 8 8 C 1.53708 * 107.28637 * 174.83093 * 7 5 4 9 9 C 1.52577 * 111.49725 * 301.86862 * 8 7 5 10 10 C 1.53777 * 111.36879 * 54.84851 * 9 8 7 11 11 C 1.51079 * 108.02764 * 303.12087 * 10 9 8 12 12 H 1.08996 * 108.38099 * 305.22641 * 11 10 9 13 13 N 1.45388 * 118.43447 * 180.94598 * 11 10 9 14 14 C 1.36937 * 126.44561 * 29.78516 * 13 11 10 15 15 H 1.08002 * 119.99779 * 335.07231 * 14 13 11 16 16 C 1.38812 * 120.00364 * 155.07386 * 14 13 11 17 17 N 1.31615 * 120.00181 * 154.42825 * 16 14 13 18 18 Si 1.86800 * 119.99579 * 334.42734 * 16 14 13 19 19 H 1.48502 * 109.47122 * 88.43103 * 18 16 14 20 20 H 1.48501 * 109.47220 * 208.42791 * 18 16 14 21 21 H 1.48493 * 109.47680 * 328.42969 * 18 16 14 22 22 H 1.09008 * 109.47217 * 177.20840 * 1 2 3 23 23 H 1.09000 * 109.47529 * 297.20340 * 1 2 3 24 24 H 1.08995 * 109.47537 * 57.20923 * 1 2 3 25 25 H 1.08998 * 110.96850 * 144.98943 * 4 2 1 26 26 H 1.08998 * 110.96766 * 21.23536 * 4 2 1 27 27 H 1.09002 * 109.88833 * 294.27244 * 7 5 4 28 28 H 1.08992 * 109.89660 * 55.38984 * 7 5 4 29 29 H 1.09005 * 109.07444 * 62.38315 * 8 7 5 30 30 H 1.08998 * 109.07475 * 181.34335 * 8 7 5 31 31 H 1.08990 * 109.10053 * 175.34397 * 9 8 7 32 32 H 1.09006 * 109.09239 * 294.36617 * 9 8 7 33 33 H 1.09002 * 109.87774 * 62.19135 * 10 9 8 34 34 H 1.09003 * 109.87714 * 183.26109 * 10 9 8 35 35 H 0.96999 * 120.00010 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0593 -0.7569 -1.2489 5 6 2.3358 -2.1551 -0.6746 6 1 1.4134 -2.7269 -0.5721 7 6 3.3964 -2.9583 -1.4082 8 6 3.6184 -4.2551 -0.6135 9 6 4.0443 -3.9648 0.8226 10 6 3.0403 -3.0382 1.5284 11 6 2.9191 -1.7723 0.7128 12 1 3.9164 -1.3538 0.5776 13 7 2.0351 -0.7222 1.1917 14 6 1.7272 -0.4509 2.4982 15 1 1.8004 -1.2296 3.2430 16 6 1.3210 0.8247 2.8652 17 7 0.5669 0.9942 3.9305 18 14 1.8447 2.3006 1.8470 19 1 0.8556 2.5306 0.7635 20 1 1.9144 3.5023 2.7167 21 1 3.1803 2.0425 1.2515 22 1 -0.3634 -1.0265 -0.0501 23 1 -0.3634 0.4698 0.9140 24 1 -0.3634 0.5565 -0.8638 25 1 2.9759 -0.3004 -1.6223 26 1 1.3002 -0.7992 -2.0300 27 1 3.0522 -3.1946 -2.4151 28 1 4.3249 -2.3895 -1.4566 29 1 2.6913 -4.8284 -0.6011 30 1 4.3937 -4.8445 -1.1029 31 1 4.1101 -4.9039 1.3718 32 1 5.0246 -3.4883 0.8143 33 1 2.0657 -3.5229 1.5857 34 1 3.3966 -2.8006 2.5307 35 1 0.2834 1.8856 4.1871 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306344519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:50 Heat of formation + Delta-G solvation = 7.447787 kcal Electronic energy + Delta-G solvation = -14901.102245 eV Core-core repulsion = 12705.849669 eV Total energy + Delta-G solvation = -2195.252576 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.39209 -35.46333 -32.54502 -31.14795 -29.79905 -28.54357 -25.33877 -24.09885 -21.34935 -20.66532 -19.85003 -19.26346 -16.36271 -15.47205 -14.63228 -14.35810 -14.02732 -13.82645 -13.07272 -12.85224 -12.38153 -12.32483 -11.83341 -11.63863 -11.48286 -11.36076 -10.97905 -10.70102 -10.49064 -10.40562 -10.18288 -10.12346 -9.93991 -9.60299 -9.35400 -9.15874 -8.44843 -6.90184 -5.91418 -3.18613 3.41669 3.53793 3.58815 4.62389 4.76881 5.07784 5.10400 5.24426 5.42881 5.55579 5.63786 5.66065 5.83978 5.93003 5.93853 5.99127 6.07948 6.21972 6.24930 6.29620 6.34125 6.43140 6.48930 6.54264 6.60925 6.69916 6.77577 6.91345 7.01437 7.16749 7.27081 7.88783 8.41128 8.93282 9.77721 10.35722 11.25121 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.040502 B = 0.012325 C = 0.010719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.155114 B = 2271.264521 C = 2611.639336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.033 0.967 4 C -0.121 4.121 5 C -0.108 4.108 6 H 0.076 0.924 7 C -0.105 4.105 8 C -0.115 4.115 9 C -0.113 4.113 10 C -0.113 4.113 11 C 0.165 3.835 12 H 0.019 0.981 13 N -0.595 5.595 14 C -0.237 4.237 15 H 0.088 0.912 16 C 0.031 3.969 17 N -0.904 5.904 18 Si 0.870 3.130 19 H -0.281 1.281 20 H -0.305 1.305 21 H -0.278 1.278 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.036 0.964 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.464 -7.286 -10.369 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.038 3.962 3 H 0.050 0.950 4 C -0.159 4.159 5 C -0.128 4.128 6 H 0.095 0.905 7 C -0.143 4.143 8 C -0.153 4.153 9 C -0.151 4.151 10 C -0.152 4.152 11 C 0.058 3.942 12 H 0.036 0.964 13 N -0.320 5.320 14 C -0.364 4.364 15 H 0.105 0.895 16 C -0.168 4.168 17 N -0.547 5.547 18 Si 0.701 3.299 19 H -0.208 1.208 20 H -0.233 1.233 21 H -0.204 1.204 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.364 -7.152 -10.129 13.145 hybrid contribution 0.253 1.055 -0.442 1.172 sum 4.617 -6.096 -10.570 13.047 Atomic orbital electron populations 1.22050 0.96986 1.00907 1.01069 1.21561 0.93317 0.94805 0.86540 0.94988 1.22494 1.00297 0.96075 0.97057 1.22198 0.98298 0.95023 0.97254 0.90525 1.21395 0.98794 0.96132 0.97932 1.21516 1.00807 0.97276 0.95704 1.21504 0.99224 0.99146 0.95262 1.21355 0.98781 0.95683 0.99348 1.20533 0.92896 0.89292 0.91450 0.96351 1.44491 1.50922 1.35108 1.01460 1.18532 1.40521 0.94940 0.82409 0.89470 1.25041 0.98759 0.97045 0.95989 1.69901 1.34461 1.22329 1.28011 0.87110 0.79970 0.83547 0.79316 1.20843 1.23278 1.20425 0.93155 0.91378 0.94513 0.92031 0.91647 0.92450 0.92061 0.92436 0.92801 0.92563 0.92543 0.92165 0.91681 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.50 37.16 0.32 -2.95 16 2 C 0.14 3.18 2.53 -65.75 -0.17 3.02 16 3 H 0.03 0.78 4.09 -51.93 -0.21 0.57 16 4 C -0.12 -2.14 6.08 -25.15 -0.15 -2.29 16 5 C -0.11 -1.83 2.61 -89.60 -0.23 -2.07 16 6 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 7 C -0.10 -1.43 5.63 -26.91 -0.15 -1.58 16 8 C -0.12 -1.47 5.84 -26.58 -0.16 -1.63 16 9 C -0.11 -1.61 5.86 -26.54 -0.16 -1.76 16 10 C -0.11 -2.05 5.27 -27.29 -0.14 -2.20 16 11 C 0.17 3.36 2.55 -68.28 -0.17 3.18 16 12 H 0.02 0.40 7.95 -51.93 -0.41 -0.01 16 13 N -0.60 -14.55 2.82 -156.00 -0.44 -14.99 16 14 C -0.24 -6.71 9.78 -15.06 -0.15 -6.86 16 15 H 0.09 2.62 7.70 -52.49 -0.40 2.21 16 16 C 0.03 0.90 4.50 -17.43 -0.08 0.82 16 17 N -0.90 -27.91 13.97 55.49 0.78 -27.13 16 18 Si 0.87 22.98 23.79 -169.99 -4.04 18.93 16 19 H -0.28 -7.15 6.63 56.52 0.37 -6.78 16 20 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 21 H -0.28 -7.37 7.05 56.52 0.40 -6.97 16 22 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 23 H 0.07 1.69 6.31 -51.93 -0.33 1.36 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.03 8.13 -51.93 -0.42 0.60 16 26 H 0.06 1.01 7.86 -51.93 -0.41 0.61 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.84 8.03 -51.93 -0.42 0.42 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 34 H 0.06 1.27 7.99 -51.93 -0.41 0.86 16 35 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 260.15 15.07 3.92 3.92 Total: -1.00 -30.20 260.15 -7.02 -37.22 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.99 Total: -3.65 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.24 Total: -14.31 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.34 Total: -42.12 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.04 Total: 18.93 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.20 -7.02 -37.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306344519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.668 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds