Wall clock time and date at job start Thu Apr 9 2020 11:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.06946 * 2 1 4 4 C 1.55332 * 109.92093 * 238.78228 * 2 1 3 5 5 C 1.53666 * 101.78319 * 263.11348 * 4 2 1 6 6 H 1.09003 * 111.11172 * 78.51017 * 5 4 2 7 7 C 1.51927 * 115.22482 * 205.89337 * 5 4 2 8 8 C 1.53708 * 107.28637 * 174.83093 * 7 5 4 9 9 C 1.52577 * 111.49725 * 301.86862 * 8 7 5 10 10 C 1.53777 * 111.36879 * 54.84851 * 9 8 7 11 11 C 1.51079 * 108.02764 * 303.12087 * 10 9 8 12 12 H 1.08996 * 108.38099 * 305.22641 * 11 10 9 13 13 N 1.45388 * 118.43447 * 180.94598 * 11 10 9 14 14 C 1.36937 * 126.44561 * 29.78516 * 13 11 10 15 15 H 1.08002 * 119.99779 * 335.07231 * 14 13 11 16 16 C 1.38812 * 120.00364 * 155.07386 * 14 13 11 17 17 N 1.31615 * 120.00181 * 154.42825 * 16 14 13 18 18 Si 1.86800 * 119.99579 * 334.42734 * 16 14 13 19 19 H 1.48502 * 109.47122 * 88.43103 * 18 16 14 20 20 H 1.48501 * 109.47220 * 208.42791 * 18 16 14 21 21 H 1.48493 * 109.47680 * 328.42969 * 18 16 14 22 22 H 1.09008 * 109.47217 * 177.20840 * 1 2 3 23 23 H 1.09000 * 109.47529 * 297.20340 * 1 2 3 24 24 H 1.08995 * 109.47537 * 57.20923 * 1 2 3 25 25 H 1.08998 * 110.96850 * 144.98943 * 4 2 1 26 26 H 1.08998 * 110.96766 * 21.23536 * 4 2 1 27 27 H 1.09002 * 109.88833 * 294.27244 * 7 5 4 28 28 H 1.08992 * 109.89660 * 55.38984 * 7 5 4 29 29 H 1.09005 * 109.07444 * 62.38315 * 8 7 5 30 30 H 1.08998 * 109.07475 * 181.34335 * 8 7 5 31 31 H 1.08990 * 109.10053 * 175.34397 * 9 8 7 32 32 H 1.09006 * 109.09239 * 294.36617 * 9 8 7 33 33 H 1.09002 * 109.87774 * 62.19135 * 10 9 8 34 34 H 1.09003 * 109.87714 * 183.26109 * 10 9 8 35 35 H 0.96999 * 120.00010 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9040 1.0238 0.0000 4 6 2.0593 -0.7569 -1.2489 5 6 2.3358 -2.1551 -0.6746 6 1 1.4134 -2.7269 -0.5721 7 6 3.3964 -2.9583 -1.4082 8 6 3.6184 -4.2551 -0.6135 9 6 4.0443 -3.9648 0.8226 10 6 3.0403 -3.0382 1.5284 11 6 2.9191 -1.7723 0.7128 12 1 3.9164 -1.3538 0.5776 13 7 2.0351 -0.7222 1.1917 14 6 1.7272 -0.4509 2.4982 15 1 1.8004 -1.2296 3.2430 16 6 1.3210 0.8247 2.8652 17 7 0.5669 0.9942 3.9305 18 14 1.8447 2.3006 1.8470 19 1 0.8556 2.5306 0.7635 20 1 1.9144 3.5023 2.7167 21 1 3.1803 2.0425 1.2515 22 1 -0.3634 -1.0265 -0.0501 23 1 -0.3634 0.4698 0.9140 24 1 -0.3634 0.5565 -0.8638 25 1 2.9759 -0.3004 -1.6223 26 1 1.3002 -0.7992 -2.0300 27 1 3.0522 -3.1946 -2.4151 28 1 4.3249 -2.3895 -1.4566 29 1 2.6913 -4.8284 -0.6011 30 1 4.3937 -4.8445 -1.1029 31 1 4.1101 -4.9039 1.3718 32 1 5.0246 -3.4883 0.8143 33 1 2.0657 -3.5229 1.5857 34 1 3.3966 -2.8006 2.5307 35 1 0.2834 1.8856 4.1871 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306344519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:50 Heat of formation + Delta-G solvation = -11.314236 kcal Electronic energy + Delta-G solvation = -14901.915827 eV Core-core repulsion = 12705.849669 eV Total energy + Delta-G solvation = -2196.066158 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.88976 -36.95025 -34.49633 -32.86385 -31.30309 -30.15837 -26.79068 -26.04596 -22.76930 -21.95609 -21.69652 -20.64516 -18.35555 -17.40121 -16.23579 -15.82357 -15.40418 -15.37940 -14.79120 -14.41128 -14.17719 -13.88782 -13.42863 -13.21821 -13.12543 -12.67555 -12.65232 -12.40042 -12.25848 -11.95286 -11.85974 -11.55295 -11.40953 -11.23579 -10.95458 -10.72516 -10.52427 -8.92862 -8.18563 -5.40761 1.28601 1.35698 1.45484 2.42867 2.98112 3.31805 3.79557 3.86954 3.94340 4.18318 4.26181 4.33440 4.46481 4.56598 4.59093 4.67348 4.74229 4.77122 4.83931 4.97769 5.03859 5.05506 5.14816 5.23605 5.31522 5.35247 5.43071 5.44303 5.52342 5.57056 5.72444 5.81996 6.16751 6.84837 7.60836 8.26531 9.02431 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.040502 B = 0.012325 C = 0.010719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.155114 B = 2271.264521 C = 2611.639336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.128 3.872 3 H 0.015 0.985 4 C -0.111 4.111 5 C -0.094 4.094 6 H 0.072 0.928 7 C -0.099 4.099 8 C -0.113 4.113 9 C -0.107 4.107 10 C -0.111 4.111 11 C 0.149 3.851 12 H 0.011 0.989 13 N -0.614 5.614 14 C -0.223 4.223 15 H 0.054 0.946 16 C -0.021 4.021 17 N -0.950 5.950 18 Si 0.929 3.071 19 H -0.266 1.266 20 H -0.311 1.311 21 H -0.279 1.279 22 H 0.056 0.944 23 H 0.026 0.974 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.377 -8.354 -13.699 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.023 3.977 3 H 0.032 0.968 4 C -0.148 4.148 5 C -0.113 4.113 6 H 0.090 0.910 7 C -0.137 4.137 8 C -0.150 4.150 9 C -0.145 4.145 10 C -0.149 4.149 11 C 0.043 3.957 12 H 0.029 0.971 13 N -0.338 5.338 14 C -0.352 4.352 15 H 0.072 0.928 16 C -0.216 4.216 17 N -0.597 5.597 18 Si 0.759 3.241 19 H -0.192 1.192 20 H -0.240 1.240 21 H -0.206 1.206 22 H 0.075 0.925 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.295 -8.241 -13.504 16.682 hybrid contribution -0.025 1.306 0.640 1.455 sum 5.271 -6.935 -12.864 15.536 Atomic orbital electron populations 1.21983 0.96660 1.01381 1.00379 1.21804 0.93743 0.94422 0.87760 0.96790 1.22494 1.01626 0.95358 0.95360 1.22141 0.99010 0.95239 0.94935 0.90991 1.21407 0.97587 0.95773 0.98933 1.21518 1.02025 0.97275 0.94210 1.21474 0.97806 0.98691 0.96486 1.21336 0.99437 0.95866 0.98305 1.20846 0.91963 0.88837 0.94086 0.97137 1.44677 1.51980 1.36400 1.00776 1.18428 1.38715 0.93993 0.84089 0.92847 1.25536 0.99360 0.99326 0.97369 1.70005 1.36661 1.22606 1.30379 0.86144 0.79590 0.80206 0.78147 1.19178 1.23987 1.20563 0.92519 0.95451 0.91306 0.90671 0.88610 0.89596 0.91762 0.92027 0.89869 0.90942 0.92224 0.93308 0.94608 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.06 8.50 71.98 0.61 -5.44 16 2 C 0.13 5.47 2.53 45.46 0.12 5.58 16 3 H 0.01 0.68 4.09 -2.39 -0.01 0.67 16 4 C -0.11 -3.48 6.08 31.62 0.19 -3.29 16 5 C -0.09 -2.88 2.61 -10.13 -0.03 -2.91 16 6 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 7 C -0.10 -2.24 5.63 30.48 0.17 -2.07 16 8 C -0.11 -2.38 5.84 30.69 0.18 -2.20 16 9 C -0.11 -2.76 5.86 30.72 0.18 -2.58 16 10 C -0.11 -4.03 5.27 30.23 0.16 -3.87 16 11 C 0.15 5.92 2.55 45.36 0.12 6.03 16 12 H 0.01 0.46 7.95 -2.39 -0.02 0.44 16 13 N -0.61 -30.14 2.82 -647.47 -1.82 -31.97 16 14 C -0.22 -13.13 9.78 84.03 0.82 -12.31 16 15 H 0.05 3.42 7.70 -2.91 -0.02 3.40 16 16 C -0.02 -1.25 4.50 84.86 0.38 -0.87 16 17 N -0.95 -61.06 13.97 21.65 0.30 -60.76 16 18 Si 0.93 48.63 23.79 68.60 1.63 50.26 16 19 H -0.27 -13.05 6.63 99.48 0.66 -12.40 16 20 H -0.31 -16.44 7.11 99.48 0.71 -15.73 16 21 H -0.28 -14.48 7.05 99.48 0.70 -13.78 16 22 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 23 H 0.03 1.33 6.31 -2.39 -0.02 1.32 16 24 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.07 2.18 8.13 -2.39 -0.02 2.16 16 26 H 0.10 2.47 7.86 -2.39 -0.02 2.45 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.45 8.03 -2.39 -0.02 1.43 16 29 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.51 8.14 -2.38 -0.02 1.50 16 33 H 0.05 1.84 8.13 -2.39 -0.02 1.82 16 34 H 0.04 1.46 7.99 -2.39 -0.02 1.44 16 35 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -67.89 260.15 3.99 -63.90 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: 0.98 Total: 2.48 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 2.90 Total: -23.91 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -1.52 Total: -92.73 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 1.63 Total: 50.26 kcal Total: -67.89 3.99 -63.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306344519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.583 kcal (2) G-P(sol) polarization free energy of solvation -67.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds