Wall clock time and date at job start Thu Apr 9 2020 11:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47480 * 111.00058 * 265.97169 * 10 9 7 12 12 C 1.53511 * 87.92978 * 221.29855 * 11 10 9 13 13 C 1.53001 * 114.16985 * 139.67330 * 12 11 10 14 14 C 1.54273 * 110.03175 * 204.06116 * 13 12 11 15 15 C 1.54957 * 104.15881 * 217.13566 * 14 13 12 16 16 C 1.54890 * 102.78088 * 37.89117 * 15 14 13 17 17 C 1.53880 * 110.03288 * 86.84656 * 13 12 11 18 18 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 19 19 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 20 20 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 21 21 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 22 22 H 1.09004 * 113.47132 * 336.06118 * 11 10 9 23 23 H 1.09000 * 113.47538 * 106.52857 * 11 10 9 24 24 H 1.09011 * 114.34125 * 272.36207 * 12 11 10 25 25 H 1.09002 * 110.01808 * 325.45276 * 13 12 11 26 26 H 1.08996 * 110.48420 * 335.78392 * 14 13 12 27 27 H 1.08996 * 110.48176 * 98.42501 * 14 13 12 28 28 H 1.09004 * 110.72603 * 279.57541 * 15 14 13 29 29 H 1.09001 * 110.92434 * 156.30092 * 15 14 13 30 30 H 1.09005 * 110.48758 * 203.40460 * 16 15 14 31 31 H 1.08999 * 110.59760 * 80.81657 * 16 15 14 32 32 H 1.09003 * 110.02776 * 238.56911 * 17 13 12 33 33 H 1.09003 * 110.03047 * 0.02562 * 17 13 12 34 34 H 1.09000 * 113.47556 * 253.46531 * 18 10 9 35 35 H 1.08997 * 113.47949 * 23.93922 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.4756 -4.0803 -1.3740 12 6 2.4190 -5.5182 -0.8392 13 6 1.7017 -6.5030 -1.7647 14 6 1.1668 -7.6993 -0.9507 15 6 1.3699 -8.9166 -1.8878 16 6 2.7258 -8.6031 -2.5677 17 6 2.6923 -7.0773 -2.7927 18 6 1.5184 -4.8986 0.2386 19 1 -0.4850 0.8401 0.0004 20 1 0.6247 -2.5571 0.8897 21 1 0.6240 -2.5568 -0.8903 22 1 1.6756 -3.8466 -2.0765 23 1 3.4598 -3.7930 -1.7440 24 1 3.3701 -5.8955 -0.4633 25 1 0.8800 -6.0027 -2.2771 26 1 1.7419 -7.8242 -0.0332 27 1 0.1093 -7.5638 -0.7237 28 1 0.5707 -8.9719 -2.6270 29 1 1.4295 -9.8425 -1.3158 30 1 2.8053 -9.1275 -3.5200 31 1 3.5545 -8.8742 -1.9136 32 1 2.3508 -6.8564 -3.8040 33 1 3.6842 -6.6547 -2.6319 34 1 1.6915 -5.3047 1.2352 35 1 0.4631 -4.8832 -0.0336 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306466473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:35 Heat of formation + Delta-G solvation = 11.056969 kcal Electronic energy + Delta-G solvation = -13820.238228 eV Core-core repulsion = 11625.142158 eV Total energy + Delta-G solvation = -2195.096070 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.74934 -37.21507 -32.91558 -30.52192 -28.67588 -27.79453 -25.18538 -24.61242 -21.61469 -20.54535 -19.56956 -19.09406 -16.31560 -15.70859 -15.33152 -14.76760 -14.40031 -13.91688 -13.39659 -13.24489 -12.41699 -12.26392 -11.96180 -11.72183 -11.15641 -11.07674 -10.99998 -10.95948 -10.76153 -10.61980 -10.40903 -10.29233 -10.13547 -9.65386 -9.45809 -9.14938 -8.39241 -7.75268 -6.00075 -4.00964 3.34349 3.39630 3.44457 4.45702 4.56139 4.69946 4.76105 5.09939 5.13266 5.30217 5.35114 5.49979 5.66433 5.68284 5.70881 5.79409 5.85019 5.94060 6.03813 6.06245 6.16093 6.22340 6.31035 6.34192 6.40057 6.45925 6.52598 6.73412 6.83051 7.26426 7.72538 7.92706 8.18419 8.53210 9.06824 9.62939 11.11094 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.074242 B = 0.005895 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.055285 B = 4748.634451 C = 4894.126624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.053 3.947 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.273 1.273 6 H -0.287 1.287 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.159 3.841 10 N -0.470 5.470 11 C 0.014 3.986 12 C -0.112 4.112 13 C -0.082 4.082 14 C -0.117 4.117 15 C -0.126 4.126 16 C -0.124 4.124 17 C -0.119 4.119 18 C 0.001 3.999 19 H 0.261 0.739 20 H 0.027 0.973 21 H 0.002 0.998 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.879 -15.508 -4.475 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.148 4.148 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.032 3.968 10 N -0.192 5.192 11 C -0.115 4.115 12 C -0.131 4.131 13 C -0.101 4.101 14 C -0.155 4.155 15 C -0.163 4.163 16 C -0.162 4.162 17 C -0.157 4.157 18 C -0.129 4.129 19 H 0.070 0.930 20 H 0.045 0.955 21 H 0.020 0.980 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.254 -15.099 -4.025 15.961 hybrid contribution -0.436 0.919 -0.484 1.127 sum 2.818 -14.180 -4.509 15.144 Atomic orbital electron populations 1.69963 1.06081 1.26725 1.51371 1.25016 0.94888 0.99378 0.95510 0.86477 0.79717 0.82979 0.78124 1.20620 1.19837 1.21307 1.21129 0.93582 0.89860 1.49569 0.91928 1.20250 0.90742 0.89311 0.96447 1.68926 1.33625 1.01749 1.14941 1.23719 1.01440 0.92831 0.93503 1.22916 0.99206 0.94272 0.96728 1.21769 0.97401 0.95474 0.95430 1.22386 1.00800 0.93944 0.98325 1.22509 0.97308 0.97932 0.98585 1.22357 0.97540 0.96240 1.00032 1.22189 0.99817 0.94862 0.98793 1.23707 0.96845 0.93668 0.98668 0.92972 0.95540 0.98034 0.92153 0.91190 0.88904 0.91231 0.91419 0.91903 0.91851 0.92021 0.92232 0.91856 0.92179 0.91547 0.91261 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 7 C -0.50 -14.83 9.39 -34.44 -0.32 -15.16 16 8 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 9 C 0.16 4.32 4.57 -4.98 -0.02 4.30 16 10 N -0.47 -10.74 6.32 -246.05 -1.55 -12.29 16 11 C 0.01 0.28 7.28 -7.54 -0.05 0.23 16 12 C -0.11 -1.76 3.07 -90.09 -0.28 -2.04 16 13 C -0.08 -1.07 2.74 -89.50 -0.25 -1.31 16 14 C -0.12 -1.35 5.97 -25.03 -0.15 -1.50 16 15 C -0.13 -1.24 6.91 -24.70 -0.17 -1.41 16 16 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 17 C -0.12 -1.36 6.46 -25.61 -0.17 -1.53 16 18 C 0.00 0.01 6.85 -7.53 -0.05 -0.04 16 19 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 20 H 0.03 0.77 8.08 -51.92 -0.42 0.35 16 21 H 0.00 0.05 7.30 -51.93 -0.38 -0.33 16 22 H 0.06 1.21 7.24 -51.93 -0.38 0.83 16 23 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 24 H 0.09 1.41 8.12 -51.92 -0.42 0.98 16 25 H 0.07 0.98 7.94 -51.93 -0.41 0.56 16 26 H 0.07 0.78 7.85 -51.93 -0.41 0.38 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.77 7.66 -51.93 -0.40 0.38 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 LS Contribution 279.30 15.07 4.21 4.21 Total: -1.00 -30.55 279.30 -9.51 -40.05 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -6.15 Total: -4.05 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -1.73 Total: -18.40 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.82 Total: -39.05 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.55 -9.51 -40.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306466473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.111 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds