Wall clock time and date at job start Thu Apr 9 2020 11:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 7 12 12 C 1.49698 * 111.00323 * 287.24016 * 11 10 9 13 13 C 1.56241 * 106.47348 * 230.97916 * 12 11 10 14 14 C 1.52070 * 100.85565 * 336.45853 * 13 12 11 15 15 H 1.09002 * 111.62772 * 286.30487 * 14 13 12 16 16 C 1.51182 * 122.28386 * 151.57115 * 14 13 12 17 17 C 1.55708 * 104.57989 * 218.44458 * 16 14 13 18 18 C 1.56284 * 105.93203 * 7.25678 * 17 16 14 19 19 C 1.43197 * 111.00186 * 169.99947 * 11 10 9 20 20 H 1.08993 * 108.29195 * 43.61860 * 19 11 10 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.09001 * 110.05022 * 350.22413 * 12 11 10 27 27 H 1.08995 * 110.05890 * 111.71907 * 12 11 10 28 28 H 1.08993 * 111.13676 * 218.56025 * 13 12 11 29 29 H 1.08992 * 111.17688 * 94.36915 * 13 12 11 30 30 H 1.08998 * 110.41613 * 337.22347 * 16 14 13 31 31 H 1.09005 * 110.41575 * 99.66939 * 16 14 13 32 32 H 1.09005 * 110.15451 * 126.37127 * 17 16 14 33 33 H 1.08997 * 110.15849 * 248.06426 * 17 16 14 34 34 H 1.08999 * 110.96873 * 266.18520 * 18 17 16 35 35 H 1.09000 * 110.97227 * 142.41236 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 0.8841 -5.1915 1.3362 13 6 1.3080 -6.6362 1.7536 14 6 1.6086 -7.2502 0.3952 15 1 0.6955 -7.4588 -0.1624 16 6 2.6147 -8.3646 0.2176 17 6 3.3325 -8.0344 -1.1241 18 6 2.8135 -6.6240 -1.5527 19 6 2.3941 -6.0371 -0.2310 20 1 3.2915 -5.8888 0.3696 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 1.2498 -4.4691 2.0660 27 1 -0.2012 -5.1281 1.2582 28 1 0.4893 -7.1584 2.2485 29 1 2.1977 -6.6192 2.3828 30 1 3.3293 -8.3665 1.0407 31 1 2.1079 -9.3273 0.1508 32 1 4.4122 -8.0084 -0.9760 33 1 3.0753 -8.7762 -1.8802 34 1 1.9629 -6.7102 -2.2288 35 1 3.6116 -6.0354 -2.0051 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306478681.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:40 Heat of formation + Delta-G solvation = -3.448710 kcal Electronic energy + Delta-G solvation = -14028.294795 eV Core-core repulsion = 11832.569712 eV Total energy + Delta-G solvation = -2195.725083 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.10511 -35.41414 -33.14494 -31.67155 -29.35090 -26.81483 -26.57019 -24.06332 -21.64812 -20.47059 -19.81978 -19.02700 -16.48510 -15.89944 -14.80155 -14.75302 -14.51844 -14.07855 -13.24771 -12.89892 -12.53004 -12.39941 -12.07309 -11.80604 -11.24688 -11.15352 -11.02077 -10.82540 -10.57822 -10.53194 -10.40373 -10.37108 -9.94633 -9.76087 -9.26605 -9.04673 -8.31028 -7.67533 -5.96298 -3.98644 3.32933 3.40104 3.44293 4.07116 4.46912 4.65990 4.82306 4.99847 5.20524 5.30178 5.36678 5.39607 5.59506 5.61708 5.68318 5.84486 5.90986 5.97660 6.03727 6.10347 6.20892 6.24903 6.34577 6.41955 6.45448 6.59495 6.60715 7.03073 7.47034 7.66623 7.88350 7.94379 8.14842 8.47715 9.09209 9.64862 11.15179 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.057832 B = 0.006562 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.042115 B = 4265.751478 C = 4522.458538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.030 3.970 10 C 0.058 3.942 11 N -0.513 5.513 12 C 0.047 3.953 13 C -0.126 4.126 14 C -0.115 4.115 15 H 0.084 0.916 16 C -0.109 4.109 17 C -0.119 4.119 18 C -0.102 4.102 19 C 0.060 3.940 20 H 0.027 0.973 21 H 0.259 0.741 22 H 0.016 0.984 23 H 0.024 0.976 24 H 0.058 0.942 25 H 0.021 0.979 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -15.173 0.895 15.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.069 4.069 11 N -0.236 5.236 12 C -0.080 4.080 13 C -0.164 4.164 14 C -0.134 4.134 15 H 0.103 0.897 16 C -0.147 4.147 17 C -0.158 4.158 18 C -0.140 4.140 19 C -0.050 4.050 20 H 0.045 0.955 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.042 0.958 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.867 -14.995 0.492 15.494 hybrid contribution 1.094 1.040 0.638 1.639 sum 4.961 -13.955 1.130 14.854 Atomic orbital electron populations 1.69989 1.06021 1.26396 1.50848 1.24996 0.94821 0.99151 0.95370 0.86552 0.80079 0.83879 0.77574 1.19807 1.20977 1.21035 1.21253 0.92982 0.91151 1.50622 0.92831 1.19048 0.93925 0.90013 0.97795 1.22517 0.96571 0.88981 0.98794 1.62918 1.30742 1.01856 1.28076 1.23605 1.00427 0.94354 0.89641 1.22333 1.01162 0.96643 0.96253 1.22376 0.98912 0.95074 0.97062 0.89715 1.21649 0.97716 0.97837 0.97528 1.22844 0.99717 0.96542 0.96665 1.21654 1.00796 0.94965 0.96596 1.22011 0.94835 0.91399 0.96741 0.95531 0.93086 0.96607 0.95779 0.92377 0.96117 0.92368 0.90462 0.91253 0.91775 0.91957 0.91896 0.91914 0.91689 0.90851 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.80 5.06 -27.88 -0.14 0.66 16 10 C 0.06 1.30 4.51 -3.83 -0.02 1.28 16 11 N -0.51 -9.93 5.18 -223.41 -1.16 -11.09 16 12 C 0.05 0.81 6.21 -0.52 0.00 0.81 16 13 C -0.13 -1.71 6.70 -25.47 -0.17 -1.89 16 14 C -0.12 -1.56 3.17 -89.55 -0.28 -1.84 16 15 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.11 -1.21 6.58 -26.20 -0.17 -1.38 16 17 C -0.12 -1.31 6.93 -23.52 -0.16 -1.47 16 18 C -0.10 -1.41 6.76 -26.18 -0.18 -1.58 16 19 C 0.06 0.97 2.20 -68.43 -0.15 0.82 16 20 H 0.03 0.45 7.75 -51.93 -0.40 0.05 16 21 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 22 H 0.02 0.44 7.52 -51.93 -0.39 0.05 16 23 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.06 1.29 8.07 -51.93 -0.42 0.87 16 25 H 0.02 0.46 7.84 -51.93 -0.41 0.05 16 26 H 0.06 1.07 7.34 -51.93 -0.38 0.69 16 27 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 276.15 15.07 4.16 4.16 Total: -1.00 -30.52 276.15 -9.16 -39.69 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -6.19 Total: -4.59 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.69 Total: -18.47 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.42 Total: -37.77 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.52 -9.16 -39.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306478681.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.237 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds