Wall clock time and date at job start Thu Apr 9 2020 11:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.47515 * 179.97438 * 10 9 7 12 12 C 1.49698 * 111.00323 * 287.24016 * 11 10 9 13 13 C 1.56241 * 106.47348 * 230.97916 * 12 11 10 14 14 C 1.52070 * 100.85565 * 336.45853 * 13 12 11 15 15 H 1.09002 * 111.62772 * 286.30487 * 14 13 12 16 16 C 1.51182 * 122.28386 * 151.57115 * 14 13 12 17 17 C 1.55708 * 104.57989 * 218.44458 * 16 14 13 18 18 C 1.56284 * 105.93203 * 7.25678 * 17 16 14 19 19 C 1.43197 * 111.00186 * 169.99947 * 11 10 9 20 20 H 1.08993 * 108.29195 * 43.61860 * 19 11 10 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.09001 * 110.05022 * 350.22413 * 12 11 10 27 27 H 1.08995 * 110.05890 * 111.71907 * 12 11 10 28 28 H 1.08993 * 111.13676 * 218.56025 * 13 12 11 29 29 H 1.08992 * 111.17688 * 94.36915 * 13 12 11 30 30 H 1.08998 * 110.41613 * 337.22347 * 16 14 13 31 31 H 1.09005 * 110.41575 * 99.66939 * 16 14 13 32 32 H 1.09005 * 110.15451 * 126.37127 * 17 16 14 33 33 H 1.08997 * 110.15849 * 248.06426 * 17 16 14 34 34 H 1.08999 * 110.96873 * 266.18520 * 18 17 16 35 35 H 1.09000 * 110.97227 * 142.41236 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 0.8841 -5.1915 1.3362 13 6 1.3080 -6.6362 1.7536 14 6 1.6086 -7.2502 0.3952 15 1 0.6955 -7.4588 -0.1624 16 6 2.6147 -8.3646 0.2176 17 6 3.3325 -8.0344 -1.1241 18 6 2.8135 -6.6240 -1.5527 19 6 2.3941 -6.0371 -0.2310 20 1 3.2915 -5.8888 0.3696 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 1.2498 -4.4691 2.0660 27 1 -0.2012 -5.1281 1.2582 28 1 0.4893 -7.1584 2.2485 29 1 2.1977 -6.6192 2.3828 30 1 3.3293 -8.3665 1.0407 31 1 2.1079 -9.3273 0.1508 32 1 4.4122 -8.0084 -0.9760 33 1 3.0753 -8.7762 -1.8802 34 1 1.9629 -6.7102 -2.2288 35 1 3.6116 -6.0354 -2.0051 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306478681.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:40 Heat of formation + Delta-G solvation = -22.498136 kcal Electronic energy + Delta-G solvation = -14029.120840 eV Core-core repulsion = 11832.569712 eV Total energy + Delta-G solvation = -2196.551129 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.34748 -36.85890 -35.12460 -33.21499 -31.06095 -28.20828 -27.73689 -25.99021 -23.24259 -21.86817 -21.02698 -20.33452 -18.58519 -17.30882 -16.55362 -16.19825 -15.87444 -15.44288 -14.85940 -14.38138 -14.12594 -13.68820 -13.51830 -13.24473 -12.98692 -12.87102 -12.55285 -12.38981 -12.09351 -11.75900 -11.68377 -11.64170 -11.38933 -11.31617 -11.27462 -10.82083 -10.58506 -9.21545 -8.22378 -6.34703 1.38319 1.39356 1.52743 2.38482 2.83894 3.10612 3.38595 3.74267 3.92370 4.11047 4.19958 4.27979 4.43679 4.45993 4.55188 4.60572 4.64164 4.73733 4.87858 4.88682 5.00933 5.01859 5.09948 5.15022 5.22113 5.34030 5.41290 5.45051 5.54350 5.60820 5.77443 6.02017 6.25284 6.40307 6.82256 7.34746 8.90224 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.057832 B = 0.006562 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.042115 B = 4265.751478 C = 4522.458538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.040 3.960 10 C 0.077 3.923 11 N -0.530 5.530 12 C 0.039 3.961 13 C -0.113 4.113 14 C -0.104 4.104 15 H 0.080 0.920 16 C -0.104 4.104 17 C -0.111 4.111 18 C -0.106 4.106 19 C 0.044 3.956 20 H 0.020 0.980 21 H 0.265 0.735 22 H -0.009 1.009 23 H -0.010 1.010 24 H 0.055 0.945 25 H 0.019 0.981 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 -16.392 1.104 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.002 3.998 10 C -0.050 4.050 11 N -0.253 5.253 12 C -0.088 4.088 13 C -0.151 4.151 14 C -0.122 4.122 15 H 0.098 0.902 16 C -0.141 4.141 17 C -0.149 4.149 18 C -0.144 4.144 19 C -0.066 4.066 20 H 0.038 0.962 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.008 0.992 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.192 -16.238 0.701 17.063 hybrid contribution 0.615 1.419 0.561 1.645 sum 5.807 -14.819 1.262 15.967 Atomic orbital electron populations 1.70125 1.07898 1.27812 1.51355 1.26000 0.95785 1.03441 0.94467 0.85339 0.78946 0.78421 0.77956 1.18619 1.20149 1.20105 1.21648 0.93440 0.92333 1.51105 0.92345 1.18860 0.94083 0.91950 0.94869 1.22116 0.95188 0.89234 0.98505 1.62822 1.31352 1.01689 1.29473 1.23658 0.99813 0.96835 0.88458 1.22275 1.02327 0.93763 0.96748 1.22389 0.99021 0.94699 0.96140 0.90200 1.21662 0.97134 0.97621 0.97732 1.22817 1.00242 0.94697 0.97127 1.21741 1.00505 0.96779 0.95381 1.22224 0.94491 0.91262 0.98581 0.96154 0.92658 0.99037 0.99165 0.92624 0.96253 0.94211 0.91259 0.88880 0.90879 0.91139 0.89659 0.90869 0.89756 0.91448 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.49 13.29 21.45 0.28 -58.20 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 45.31 29.54 68.60 2.03 47.33 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.55 -32.58 9.11 25.60 0.23 -32.34 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.04 2.26 5.06 29.85 0.15 2.41 16 10 C 0.08 3.57 4.51 86.30 0.39 3.96 16 11 N -0.53 -21.02 5.18 -860.72 -4.46 -25.49 16 12 C 0.04 1.39 6.21 86.88 0.54 1.93 16 13 C -0.11 -2.89 6.70 31.41 0.21 -2.68 16 14 C -0.10 -2.57 3.17 -10.10 -0.03 -2.61 16 15 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 16 C -0.10 -1.92 6.58 30.94 0.20 -1.71 16 17 C -0.11 -2.08 6.93 32.67 0.23 -1.85 16 18 C -0.11 -2.80 6.76 30.95 0.21 -2.59 16 19 C 0.04 1.39 2.20 46.40 0.10 1.49 16 20 H 0.02 0.67 7.75 -2.39 -0.02 0.65 16 21 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 22 H -0.01 -0.53 7.52 -2.39 -0.02 -0.55 16 23 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 24 H 0.06 2.55 8.07 -2.39 -0.02 2.53 16 25 H 0.02 0.88 7.84 -2.39 -0.02 0.87 16 26 H 0.04 1.52 7.34 -2.39 -0.02 1.51 16 27 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -67.01 276.15 1.57 -65.44 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: 1.02 Total: 4.38 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: 2.70 Total: -33.46 kcal Atomic # 7 Polarization: -79.51 SS G_CDS: -4.18 Total: -83.69 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -67.01 1.57 -65.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306478681.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.944 kcal (2) G-P(sol) polarization free energy of solvation -67.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds