Wall clock time and date at job start Thu Apr 9 2020 11:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.83631 * 2 1 4 4 C 1.54487 * 110.77268 * 236.62579 * 2 1 3 5 5 N 1.47400 * 107.30710 * 218.86478 * 4 2 1 6 6 C 1.36940 * 126.02309 * 178.59619 * 5 4 2 7 7 H 1.08002 * 120.00253 * 174.47525 * 6 5 4 8 8 C 1.38818 * 119.99922 * 354.48067 * 6 5 4 9 9 N 1.31620 * 119.99784 * 7.03779 * 8 6 5 10 10 Si 1.86791 * 119.99932 * 187.03999 * 8 6 5 11 11 H 1.48505 * 109.47247 * 94.98819 * 10 8 6 12 12 H 1.48508 * 109.47275 * 214.98657 * 10 8 6 13 13 H 1.48498 * 109.47571 * 334.98623 * 10 8 6 14 14 C 1.46879 * 107.76171 * 358.65999 * 5 4 2 15 15 H 1.09000 * 107.84907 * 269.79228 * 14 5 4 16 16 C 1.51179 * 113.02416 * 149.75811 * 14 5 4 17 17 C 1.52873 * 111.24836 * 293.46683 * 16 14 5 18 18 C 1.53239 * 108.42956 * 300.81275 * 17 16 14 19 19 C 1.52683 * 108.67059 * 63.18627 * 18 17 16 20 20 C 1.53007 * 110.68530 * 298.02180 * 19 18 17 21 21 H 1.08998 * 112.42592 * 287.21475 * 20 19 18 22 22 H 1.09004 * 109.47195 * 181.92177 * 1 2 3 23 23 H 1.08998 * 109.46963 * 301.92053 * 1 2 3 24 24 H 1.08999 * 109.47373 * 61.92158 * 1 2 3 25 25 H 1.09002 * 109.89888 * 338.33342 * 4 2 1 26 26 H 1.08993 * 109.90176 * 99.38735 * 4 2 1 27 27 H 0.96999 * 119.99973 * 179.97438 * 9 8 6 28 28 H 1.09003 * 109.12255 * 173.01484 * 16 14 5 29 29 H 1.08993 * 109.08074 * 53.89435 * 16 14 5 30 30 H 1.09006 * 109.66838 * 181.07540 * 17 16 14 31 31 H 1.08996 * 109.66948 * 60.54933 * 17 16 14 32 32 H 1.09003 * 109.60455 * 303.43211 * 18 17 16 33 33 H 1.08997 * 109.74323 * 183.02346 * 18 17 16 34 34 H 1.09005 * 109.23421 * 177.71780 * 19 18 17 35 35 H 1.08995 * 109.23532 * 58.33502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9177 1.0187 0.0000 4 6 2.0779 -0.7946 -1.2063 5 7 3.2579 -1.5438 -0.7383 6 6 4.0219 -2.3952 -1.4912 7 1 4.9201 -2.8264 -1.0744 8 6 3.6418 -2.7040 -2.7901 9 7 2.6282 -2.0750 -3.3464 10 14 4.5689 -4.0122 -3.7484 11 1 3.8696 -5.3151 -3.6113 12 1 4.6249 -3.6290 -5.1821 13 1 5.9491 -4.1326 -3.2140 14 6 3.4652 -1.2143 0.6779 15 1 4.1268 -0.3495 0.7264 16 6 4.0917 -2.3447 1.4624 17 6 3.1452 -3.5410 1.5623 18 6 1.8563 -3.0826 2.2530 19 6 1.1817 -2.0282 1.3787 20 6 2.0831 -0.8024 1.2175 21 1 2.1381 -0.2043 2.1270 22 1 -0.3634 -1.0271 0.0345 23 1 -0.3633 0.5434 0.8723 24 1 -0.3634 0.4837 -0.9067 25 1 1.3189 -1.4873 -1.5699 26 1 2.3658 -0.1084 -2.0027 27 1 2.3629 -2.2905 -4.2541 28 1 4.3303 -1.9933 2.4662 29 1 5.0103 -2.6567 0.9657 30 1 3.6141 -4.3319 2.1479 31 1 2.9146 -3.9108 0.5633 32 1 2.0956 -2.6525 3.2256 33 1 1.1864 -3.9324 2.3838 34 1 0.2427 -1.7250 1.8419 35 1 0.9758 -2.4542 0.3968 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306537575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:41 Heat of formation + Delta-G solvation = 4.672282 kcal Electronic energy + Delta-G solvation = -15062.477549 eV Core-core repulsion = 12867.104618 eV Total energy + Delta-G solvation = -2195.372931 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.27721 -34.33476 -33.31421 -31.10897 -28.50533 -28.01872 -25.84121 -23.28994 -22.09649 -20.99225 -18.88338 -18.20781 -16.30652 -15.09231 -14.75166 -14.31750 -13.57799 -13.44885 -13.36149 -12.45913 -11.97516 -11.87488 -11.76540 -11.45483 -11.10472 -10.85701 -10.82179 -10.70007 -10.48760 -10.36330 -10.02562 -9.86253 -9.58200 -9.37237 -9.15211 -9.11952 -8.47275 -6.69324 -5.64031 -2.93779 3.43777 3.49388 3.50998 4.56475 5.25101 5.33340 5.38090 5.60788 5.67863 5.74507 5.81395 5.95266 6.04804 6.11076 6.12878 6.27460 6.29960 6.35131 6.43488 6.49625 6.56054 6.66635 6.75355 6.78827 6.91668 6.96829 7.10854 7.15621 7.28875 7.67323 7.75366 7.92589 8.35053 9.30752 9.92944 10.62959 11.48621 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031678 B = 0.013643 C = 0.010988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.679349 B = 2051.829007 C = 2547.577692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 H 0.059 0.941 4 C 0.184 3.816 5 N -0.594 5.594 6 C -0.216 4.216 7 H 0.077 0.923 8 C -0.010 4.010 9 N -0.921 5.921 10 Si 0.903 3.097 11 H -0.290 1.290 12 H -0.293 1.293 13 H -0.282 1.282 14 C 0.169 3.831 15 H 0.011 0.989 16 C -0.111 4.111 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.103 4.103 20 C -0.095 4.095 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.041 0.959 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.250 0.750 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 1.068 9.267 9.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.141 4.141 3 H 0.078 0.922 4 C 0.059 3.941 5 N -0.320 5.320 6 C -0.344 4.344 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.569 5.569 10 Si 0.735 3.265 11 H -0.218 1.218 12 H -0.220 1.220 13 H -0.208 1.208 14 C 0.061 3.939 15 H 0.029 0.971 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.114 4.114 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.572 0.985 9.022 9.433 hybrid contribution 0.501 -0.623 -0.639 1.023 sum -2.071 0.362 8.384 8.643 Atomic orbital electron populations 1.21759 0.95770 1.01652 1.00169 1.22704 0.94901 0.98755 0.97779 0.92237 1.21248 0.89115 0.93002 0.90741 1.44383 1.31893 1.51613 1.04086 1.18976 1.03315 1.18014 0.94127 0.90500 1.24774 0.98480 1.00048 0.97245 1.69979 1.29688 1.43150 1.14036 0.86213 0.78950 0.81967 0.79414 1.21794 1.21950 1.20760 1.20402 0.93038 0.94342 0.86079 0.97117 1.21216 0.99037 0.96450 0.98274 1.21443 0.95161 0.96865 1.01437 1.21492 0.97349 0.98154 0.98206 1.21490 0.96819 0.95218 1.00548 1.22352 0.96520 0.96041 0.96508 0.91279 0.92230 0.93963 0.93258 0.93324 0.94721 0.93967 0.93619 0.92244 0.93782 0.90279 0.93201 0.93173 0.93510 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.42 37.16 0.31 -1.94 16 2 C -0.12 -2.36 3.36 -88.26 -0.30 -2.65 16 3 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.18 4.49 4.22 -2.77 -0.01 4.48 16 5 N -0.59 -14.99 3.09 -164.21 -0.51 -15.50 16 6 C -0.22 -5.94 9.13 -15.06 -0.14 -6.08 16 7 H 0.08 2.07 6.77 -52.49 -0.36 1.71 16 8 C -0.01 -0.27 5.48 -17.43 -0.10 -0.37 16 9 N -0.92 -27.21 10.42 55.49 0.58 -26.64 16 10 Si 0.90 22.31 29.56 -169.99 -5.02 17.29 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 C 0.17 3.55 2.90 -68.13 -0.20 3.35 16 15 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 16 C -0.11 -2.10 5.05 -27.71 -0.14 -2.24 16 17 C -0.11 -2.02 5.89 -26.67 -0.16 -2.17 16 18 C -0.11 -1.84 5.92 -26.77 -0.16 -2.00 16 19 C -0.10 -1.80 3.64 -26.89 -0.10 -1.90 16 20 C -0.09 -1.73 3.50 -88.53 -0.31 -2.04 16 21 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 22 H 0.06 1.00 5.97 -51.93 -0.31 0.69 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 1.31 6.64 -51.93 -0.35 0.97 16 26 H 0.03 0.95 7.67 -51.93 -0.40 0.55 16 27 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.19 6.97 -51.93 -0.36 0.83 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.70 7.56 -51.93 -0.39 1.30 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.72 7.34 -51.93 -0.38 0.34 16 35 H 0.07 1.54 6.28 -51.93 -0.33 1.22 16 LS Contribution 258.69 15.07 3.90 3.90 Total: -1.00 -28.94 258.69 -8.15 -37.09 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -5.81 Total: -2.59 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -1.29 Total: -13.55 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.07 Total: -42.13 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.94 -8.15 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.766 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds