Wall clock time and date at job start Thu Apr 9 2020 11:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.83631 * 2 1 4 4 C 1.54487 * 110.77268 * 236.62579 * 2 1 3 5 5 N 1.47400 * 107.30710 * 218.86478 * 4 2 1 6 6 C 1.36940 * 126.02309 * 178.59619 * 5 4 2 7 7 H 1.08002 * 120.00253 * 174.47525 * 6 5 4 8 8 C 1.38818 * 119.99922 * 354.48067 * 6 5 4 9 9 N 1.31620 * 119.99784 * 7.03779 * 8 6 5 10 10 Si 1.86791 * 119.99932 * 187.03999 * 8 6 5 11 11 H 1.48505 * 109.47247 * 94.98819 * 10 8 6 12 12 H 1.48508 * 109.47275 * 214.98657 * 10 8 6 13 13 H 1.48498 * 109.47571 * 334.98623 * 10 8 6 14 14 C 1.46879 * 107.76171 * 358.65999 * 5 4 2 15 15 H 1.09000 * 107.84907 * 269.79228 * 14 5 4 16 16 C 1.51179 * 113.02416 * 149.75811 * 14 5 4 17 17 C 1.52873 * 111.24836 * 293.46683 * 16 14 5 18 18 C 1.53239 * 108.42956 * 300.81275 * 17 16 14 19 19 C 1.52683 * 108.67059 * 63.18627 * 18 17 16 20 20 C 1.53007 * 110.68530 * 298.02180 * 19 18 17 21 21 H 1.08998 * 112.42592 * 287.21475 * 20 19 18 22 22 H 1.09004 * 109.47195 * 181.92177 * 1 2 3 23 23 H 1.08998 * 109.46963 * 301.92053 * 1 2 3 24 24 H 1.08999 * 109.47373 * 61.92158 * 1 2 3 25 25 H 1.09002 * 109.89888 * 338.33342 * 4 2 1 26 26 H 1.08993 * 109.90176 * 99.38735 * 4 2 1 27 27 H 0.96999 * 119.99973 * 179.97438 * 9 8 6 28 28 H 1.09003 * 109.12255 * 173.01484 * 16 14 5 29 29 H 1.08993 * 109.08074 * 53.89435 * 16 14 5 30 30 H 1.09006 * 109.66838 * 181.07540 * 17 16 14 31 31 H 1.08996 * 109.66948 * 60.54933 * 17 16 14 32 32 H 1.09003 * 109.60455 * 303.43211 * 18 17 16 33 33 H 1.08997 * 109.74323 * 183.02346 * 18 17 16 34 34 H 1.09005 * 109.23421 * 177.71780 * 19 18 17 35 35 H 1.08995 * 109.23532 * 58.33502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9177 1.0187 0.0000 4 6 2.0779 -0.7946 -1.2063 5 7 3.2579 -1.5438 -0.7383 6 6 4.0219 -2.3952 -1.4912 7 1 4.9201 -2.8264 -1.0744 8 6 3.6418 -2.7040 -2.7901 9 7 2.6282 -2.0750 -3.3464 10 14 4.5689 -4.0122 -3.7484 11 1 3.8696 -5.3151 -3.6113 12 1 4.6249 -3.6290 -5.1821 13 1 5.9491 -4.1326 -3.2140 14 6 3.4652 -1.2143 0.6779 15 1 4.1268 -0.3495 0.7264 16 6 4.0917 -2.3447 1.4624 17 6 3.1452 -3.5410 1.5623 18 6 1.8563 -3.0826 2.2530 19 6 1.1817 -2.0282 1.3787 20 6 2.0831 -0.8024 1.2175 21 1 2.1381 -0.2043 2.1270 22 1 -0.3634 -1.0271 0.0345 23 1 -0.3633 0.5434 0.8723 24 1 -0.3634 0.4837 -0.9067 25 1 1.3189 -1.4873 -1.5699 26 1 2.3658 -0.1084 -2.0027 27 1 2.3629 -2.2905 -4.2541 28 1 4.3303 -1.9933 2.4662 29 1 5.0103 -2.6567 0.9657 30 1 3.6141 -4.3319 2.1479 31 1 2.9146 -3.9108 0.5633 32 1 2.0956 -2.6525 3.2256 33 1 1.1864 -3.9324 2.3838 34 1 0.2427 -1.7250 1.8419 35 1 0.9758 -2.4542 0.3968 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306537575.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:41 Heat of formation + Delta-G solvation = -11.759502 kcal Electronic energy + Delta-G solvation = -15063.190085 eV Core-core repulsion = 12867.104618 eV Total energy + Delta-G solvation = -2196.085466 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88308 -35.96769 -35.09072 -32.97750 -30.06778 -29.65102 -27.71603 -25.07449 -23.66033 -22.55024 -20.60555 -19.78928 -18.30929 -16.76321 -16.49912 -16.00587 -15.36320 -15.09121 -14.89431 -13.89798 -13.71487 -13.51522 -13.25790 -13.09806 -12.85092 -12.73332 -12.59347 -12.27642 -12.10852 -11.99110 -11.74133 -11.57316 -11.34247 -11.00244 -10.72023 -10.64243 -10.53087 -8.76940 -7.80420 -5.10942 1.43362 1.44855 1.53177 2.51461 3.37137 3.65522 3.82644 3.97588 4.08106 4.29894 4.39791 4.43665 4.61283 4.68289 4.70941 4.82023 4.87773 4.92638 4.98598 5.08981 5.13341 5.18637 5.25296 5.35008 5.46287 5.48040 5.57862 5.61790 5.65498 5.76267 5.83779 5.88127 6.27072 7.16486 7.86818 8.55161 9.31459 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.031678 B = 0.013643 C = 0.010988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.679349 B = 2051.829007 C = 2547.577692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.115 4.115 3 H 0.066 0.934 4 C 0.194 3.806 5 N -0.611 5.611 6 C -0.216 4.216 7 H 0.079 0.921 8 C -0.070 4.070 9 N -0.953 5.953 10 Si 0.966 3.034 11 H -0.290 1.290 12 H -0.298 1.298 13 H -0.269 1.269 14 C 0.156 3.844 15 H 0.003 0.997 16 C -0.108 4.108 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.100 4.100 20 C -0.082 4.082 21 H 0.108 0.892 22 H 0.053 0.947 23 H 0.078 0.922 24 H 0.044 0.956 25 H 0.014 0.986 26 H -0.012 1.012 27 H 0.242 0.758 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.066 0.934 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.763 1.082 12.201 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.134 4.134 3 H 0.084 0.916 4 C 0.069 3.931 5 N -0.337 5.337 6 C -0.346 4.346 7 H 0.097 0.903 8 C -0.263 4.263 9 N -0.603 5.603 10 Si 0.796 3.204 11 H -0.217 1.217 12 H -0.225 1.225 13 H -0.194 1.194 14 C 0.050 3.950 15 H 0.020 0.980 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.146 4.146 19 C -0.137 4.137 20 C -0.101 4.101 21 H 0.126 0.874 22 H 0.072 0.928 23 H 0.097 0.903 24 H 0.063 0.937 25 H 0.032 0.968 26 H 0.007 0.993 27 H 0.052 0.948 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.730 1.001 11.995 12.342 hybrid contribution 0.603 -0.594 -1.529 1.748 sum -2.127 0.407 10.465 10.687 Atomic orbital electron populations 1.21700 0.93381 1.01859 1.01678 1.22633 0.96833 0.98200 0.95758 0.91557 1.20993 0.88240 0.91766 0.92150 1.44648 1.31625 1.51118 1.06264 1.19283 1.03403 1.17511 0.94366 0.90324 1.25544 0.99888 1.02314 0.98527 1.70204 1.31514 1.44710 1.13849 0.85218 0.78352 0.79285 0.77577 1.21704 1.22514 1.19361 1.20708 0.95118 0.94901 0.84264 0.97957 1.21190 0.98022 0.95987 0.99442 1.21394 0.96553 0.97146 0.99629 1.21479 0.96078 0.98295 0.98746 1.21439 0.98179 0.95132 0.98980 1.22387 0.94213 0.96487 0.97026 0.87384 0.92825 0.90304 0.93727 0.96820 0.99335 0.94821 0.89985 0.94363 0.91492 0.94846 0.90126 0.91834 0.90569 0.94959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 8.42 71.98 0.61 -3.41 16 2 C -0.12 -4.32 3.36 -9.27 -0.03 -4.35 16 3 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.19 9.89 4.22 86.71 0.37 10.25 16 5 N -0.61 -31.71 3.09 -673.43 -2.08 -33.79 16 6 C -0.22 -12.27 9.13 84.03 0.77 -11.51 16 7 H 0.08 4.32 6.77 -2.91 -0.02 4.30 16 8 C -0.07 -4.13 5.48 84.86 0.47 -3.66 16 9 N -0.95 -59.30 10.42 21.65 0.23 -59.07 16 10 Si 0.97 47.32 29.56 68.60 2.03 49.35 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 12 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 14 C 0.16 6.39 2.90 44.66 0.13 6.52 16 15 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 16 C -0.11 -3.86 5.05 29.96 0.15 -3.71 16 17 C -0.11 -3.75 5.89 30.63 0.18 -3.56 16 18 C -0.11 -3.08 5.92 30.57 0.18 -2.90 16 19 C -0.10 -3.21 3.64 30.49 0.11 -3.10 16 20 C -0.08 -2.75 3.50 -9.44 -0.03 -2.78 16 21 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 22 H 0.05 1.74 5.97 -2.39 -0.01 1.72 16 23 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.01 0.78 6.64 -2.39 -0.02 0.77 16 26 H -0.01 -0.68 7.67 -2.39 -0.02 -0.70 16 27 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.04 1.50 6.97 -2.39 -0.02 1.48 16 30 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.03 1.43 7.56 -2.39 -0.02 1.41 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 2.02 7.34 -2.38 -0.02 2.00 16 35 H 0.03 1.31 6.28 -2.39 -0.02 1.30 16 Total: -1.00 -66.24 258.69 4.11 -62.13 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.04 Total: 3.58 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 2.89 Total: -22.20 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -1.85 Total: -92.86 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -66.24 4.11 -62.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537575.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.371 kcal (2) G-P(sol) polarization free energy of solvation -66.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds