Wall clock time and date at job start Thu Apr 9 2020 11:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 110.85665 * 2 1 4 4 C 1.55331 * 111.00028 * 236.19073 * 2 1 3 5 5 N 1.48211 * 107.03474 * 219.40125 * 4 2 1 6 6 C 1.36934 * 126.44441 * 174.95580 * 5 4 2 7 7 H 1.07997 * 120.00432 * 179.97438 * 6 5 4 8 8 C 1.38819 * 119.99673 * 359.97438 * 6 5 4 9 9 N 1.31614 * 120.00114 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99938 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47317 * 89.99529 * 10 8 6 12 12 H 1.48496 * 109.47263 * 209.99925 * 10 8 6 13 13 H 1.48509 * 109.46747 * 329.99607 * 10 8 6 14 14 C 1.45388 * 107.11895 * 354.93922 * 5 4 2 15 15 H 1.09007 * 108.67090 * 274.36573 * 14 5 4 16 16 C 1.51418 * 117.73881 * 149.58430 * 14 5 4 17 17 C 1.53774 * 107.41714 * 178.45619 * 16 14 5 18 18 C 1.52740 * 111.28976 * 57.24058 * 17 16 14 19 19 C 1.53698 * 111.52957 * 305.19970 * 18 17 16 20 20 C 1.51927 * 107.28574 * 58.13150 * 19 18 17 21 21 H 1.08994 * 111.02220 * 56.90097 * 20 19 18 22 22 H 1.08999 * 109.46903 * 296.22032 * 1 2 3 23 23 H 1.08999 * 109.46391 * 56.22086 * 1 2 3 24 24 H 1.09000 * 109.47086 * 176.22113 * 1 2 3 25 25 H 1.09000 * 109.92111 * 338.74770 * 4 2 1 26 26 H 1.08999 * 109.92226 * 100.05383 * 4 2 1 27 27 H 0.96995 * 119.99999 * 179.97438 * 9 8 6 28 28 H 1.09002 * 109.87979 * 297.95835 * 16 14 5 29 29 H 1.08996 * 109.87789 * 58.96020 * 16 14 5 30 30 H 1.08998 * 109.10077 * 177.79665 * 17 16 14 31 31 H 1.08997 * 109.10433 * 296.82910 * 17 16 14 32 32 H 1.09002 * 109.05863 * 184.66928 * 18 17 16 33 33 H 1.08998 * 109.05207 * 65.72504 * 18 17 16 34 34 H 1.08999 * 109.89628 * 298.68266 * 19 18 17 35 35 H 1.09008 * 109.95684 * 177.60691 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9181 1.0186 0.0000 4 6 2.0867 -0.8069 -1.2049 5 7 3.2646 -1.5615 -0.7151 6 6 3.9978 -2.4751 -1.4243 7 1 4.8414 -2.9662 -0.9623 8 6 3.6566 -2.7699 -2.7373 9 7 2.6283 -2.1718 -3.3002 10 14 4.6563 -4.0167 -3.7045 11 1 4.0786 -5.3711 -3.5119 12 1 4.6239 -3.6653 -5.1470 13 1 6.0613 -4.0048 -3.2236 14 6 3.4956 -1.1491 0.6598 15 1 4.1093 -0.2482 0.6554 16 6 4.1037 -2.1621 1.6067 17 6 4.2783 -1.4715 2.9695 18 6 2.9485 -0.9313 3.4918 19 6 2.2778 0.0006 2.4700 20 6 2.0798 -0.7978 1.1927 21 1 1.4934 -1.6971 1.3807 22 1 -0.3633 0.4540 0.9219 23 1 -0.3632 0.5714 -0.8542 24 1 -0.3633 -1.0254 -0.0677 25 1 1.3282 -1.4989 -1.5707 26 1 2.3868 -0.1258 -2.0012 27 1 2.3902 -2.3775 -4.2177 28 1 3.4391 -3.0201 1.7083 29 1 5.0732 -2.4871 1.2290 30 1 4.6791 -2.1898 3.6846 31 1 4.9814 -0.6453 2.8633 32 1 3.1265 -0.3790 4.4146 33 1 2.2824 -1.7681 3.7017 34 1 2.9193 0.8599 2.2747 35 1 1.3132 0.3370 2.8504 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306537579.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:44 Heat of formation + Delta-G solvation = -0.156592 kcal Electronic energy + Delta-G solvation = -14713.836269 eV Core-core repulsion = 12518.253942 eV Total energy + Delta-G solvation = -2195.582326 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.18301 -34.93645 -33.07226 -31.07383 -29.07221 -27.86565 -25.85346 -23.25575 -21.80608 -20.52373 -19.34493 -19.04242 -16.47154 -15.15178 -14.35686 -14.09358 -13.83848 -13.62799 -13.01244 -12.92148 -12.42048 -12.14981 -11.67843 -11.39462 -11.25959 -10.95250 -10.90789 -10.75454 -10.52573 -10.26803 -10.22210 -9.90175 -9.77197 -9.52786 -9.28892 -9.06742 -8.54144 -6.72343 -5.63283 -2.95257 3.44016 3.48932 3.50801 4.56262 5.05668 5.17115 5.23281 5.52472 5.60389 5.68608 5.76911 5.79740 5.90305 6.01294 6.04300 6.13538 6.16249 6.23705 6.37047 6.39742 6.41988 6.60149 6.64942 6.67081 6.72547 6.82730 6.89949 7.05670 7.29590 7.66225 7.72362 7.90742 8.34280 9.28801 9.92733 10.62540 11.49368 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035095 B = 0.011401 C = 0.008921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.647626 B = 2455.274759 C = 3138.042546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 H 0.062 0.938 4 C 0.183 3.817 5 N -0.598 5.598 6 C -0.220 4.220 7 H 0.077 0.923 8 C -0.011 4.011 9 N -0.923 5.923 10 Si 0.908 3.092 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.166 3.834 15 H 0.016 0.984 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.105 4.105 20 C -0.104 4.104 21 H 0.073 0.927 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.033 0.967 27 H 0.251 0.749 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.436 3.489 10.556 11.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 H 0.081 0.919 4 C 0.059 3.941 5 N -0.322 5.322 6 C -0.349 4.349 7 H 0.095 0.905 8 C -0.207 4.207 9 N -0.571 5.571 10 Si 0.739 3.261 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 C 0.058 3.942 15 H 0.033 0.967 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.153 4.153 19 C -0.143 4.143 20 C -0.123 4.123 21 H 0.091 0.909 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.411 3.389 10.312 10.946 hybrid contribution 0.525 -0.682 -0.627 1.065 sum -0.886 2.707 9.685 10.095 Atomic orbital electron populations 1.21643 0.95725 1.01396 1.00117 1.22314 0.94829 0.98771 0.97642 0.91929 1.21604 0.89001 0.92860 0.90672 1.44231 1.32946 1.47552 1.07516 1.19026 1.07755 1.14384 0.93704 0.90479 1.24779 0.98525 1.00300 0.97100 1.69943 1.28560 1.45289 1.13324 0.86169 0.79401 0.81076 0.79459 1.21744 1.21772 1.20788 1.20641 0.93217 0.94651 0.85672 0.96690 1.21481 1.01104 0.98763 0.93992 1.21542 0.96978 0.99606 0.97036 1.21539 0.97006 0.98962 0.97748 1.21409 0.99490 0.97890 0.95487 1.22261 0.98572 0.98335 0.93151 0.90878 0.93840 0.93217 0.92867 0.92648 0.94875 0.93903 0.92168 0.92263 0.92805 0.92612 0.92950 0.92548 0.92223 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.24 37.16 0.34 -1.84 16 2 C -0.12 -2.26 3.12 -89.03 -0.28 -2.54 16 3 H 0.06 1.18 8.13 -51.93 -0.42 0.75 16 4 C 0.18 4.57 5.05 -1.86 -0.01 4.56 16 5 N -0.60 -15.66 3.35 -163.17 -0.55 -16.21 16 6 C -0.22 -6.25 9.89 -15.06 -0.15 -6.40 16 7 H 0.08 2.11 7.26 -52.49 -0.38 1.73 16 8 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 9 N -0.92 -27.71 10.44 55.49 0.58 -27.13 16 10 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.17 3.55 2.55 -68.11 -0.17 3.37 16 15 H 0.02 0.35 7.90 -51.93 -0.41 -0.06 16 16 C -0.11 -2.15 5.37 -27.13 -0.15 -2.30 16 17 C -0.11 -1.68 5.86 -26.46 -0.16 -1.83 16 18 C -0.11 -1.57 5.84 -26.50 -0.15 -1.72 16 19 C -0.10 -1.56 5.61 -26.91 -0.15 -1.71 16 20 C -0.10 -1.91 2.05 -89.60 -0.18 -2.10 16 21 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 25 H 0.06 1.53 6.86 -51.93 -0.36 1.17 16 26 H 0.03 0.91 7.78 -51.93 -0.40 0.51 16 27 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 29 H 0.06 1.15 7.67 -51.93 -0.40 0.76 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.89 7.99 -51.93 -0.41 0.47 16 35 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 267.89 15.07 4.04 4.04 Total: -1.00 -29.92 267.89 -8.25 -38.17 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -6.14 Total: -3.48 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.15 Total: -12.93 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.03 Total: -43.34 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.92 -8.25 -38.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537579.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.009 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds