Wall clock time and date at job start Thu Apr 9 2020 11:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.68776 * 2 1 4 4 C 1.54483 * 110.77547 * 236.71735 * 2 1 3 5 5 N 1.47397 * 107.16094 * 264.47837 * 4 2 1 6 6 C 1.36928 * 126.02387 * 181.48791 * 5 4 2 7 7 H 1.08007 * 119.99900 * 174.05701 * 6 5 4 8 8 C 1.38807 * 120.00369 * 354.05468 * 6 5 4 9 9 N 1.31619 * 119.99583 * 6.75635 * 8 6 5 10 10 Si 1.86796 * 120.00502 * 186.75618 * 8 6 5 11 11 H 1.48495 * 109.47358 * 94.98334 * 10 8 6 12 12 H 1.48506 * 109.47418 * 214.98538 * 10 8 6 13 13 H 1.48506 * 109.46851 * 334.98270 * 10 8 6 14 14 C 1.46531 * 107.95329 * 1.74450 * 5 4 2 15 15 H 1.09001 * 108.48588 * 90.06277 * 14 5 4 16 16 C 1.51176 * 113.00983 * 209.90748 * 14 5 4 17 17 C 1.52879 * 111.23940 * 66.37213 * 16 14 5 18 18 C 1.53242 * 108.41693 * 59.21052 * 17 16 14 19 19 C 1.53522 * 108.70817 * 296.47967 * 18 17 16 20 20 C 1.53014 * 110.11577 * 62.22555 * 19 18 17 21 21 H 1.09003 * 112.98166 * 72.30922 * 20 19 18 22 22 H 1.09000 * 109.47213 * 181.82701 * 1 2 3 23 23 H 1.09004 * 109.46898 * 301.82872 * 1 2 3 24 24 H 1.08995 * 109.47333 * 61.82203 * 1 2 3 25 25 H 1.08997 * 109.89942 * 145.08992 * 4 2 1 26 26 H 1.08998 * 110.04172 * 23.94327 * 4 2 1 27 27 H 0.97004 * 119.99983 * 179.97438 * 9 8 6 28 28 H 1.08997 * 109.12785 * 186.82306 * 16 14 5 29 29 H 1.09001 * 109.12526 * 305.92258 * 16 14 5 30 30 H 1.08994 * 109.67658 * 178.94405 * 17 16 14 31 31 H 1.09006 * 109.67409 * 299.48383 * 17 16 14 32 32 H 1.09007 * 109.60174 * 56.57489 * 18 17 16 33 33 H 1.09000 * 109.60341 * 177.05317 * 18 17 16 34 34 H 1.09001 * 109.64087 * 302.01960 * 19 18 17 35 35 H 1.09004 * 109.41290 * 182.29179 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0780 -0.7926 -1.2075 5 7 2.3589 -2.1613 -0.7379 6 6 2.8850 -3.1782 -1.4890 7 1 3.1411 -4.1178 -1.0219 8 6 3.0891 -3.0017 -2.8505 9 7 2.9034 -1.8182 -3.3958 10 14 3.6273 -4.4436 -3.9091 11 1 2.4348 -5.0746 -4.5294 12 1 4.5426 -3.9612 -4.9744 13 1 4.3326 -5.4412 -3.0649 14 6 1.9703 -2.2436 0.6725 15 1 0.9272 -2.5553 0.7259 16 6 2.7977 -3.2368 1.4564 17 6 4.2536 -2.7828 1.5629 18 6 4.2855 -1.4179 2.2588 19 6 3.5496 -0.3986 1.3778 20 6 2.0831 -0.8045 1.2162 21 1 1.4975 -0.6541 2.1232 22 1 -0.3634 -1.0271 0.0328 23 1 -0.3633 0.5420 0.8732 24 1 -0.3634 0.4852 -0.9058 25 1 2.9954 -0.3291 -1.5701 26 1 1.3354 -0.8191 -2.0050 27 1 3.0463 -1.6947 -4.3472 28 1 2.3807 -3.3369 2.4585 29 1 2.7611 -4.2050 0.9571 30 1 4.8218 -3.5062 2.1475 31 1 4.6849 -2.6963 0.5655 32 1 3.7951 -1.4909 3.2296 33 1 5.3194 -1.0994 2.3919 34 1 4.0204 -0.3557 0.3956 35 1 3.6005 0.5859 1.8429 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306537581.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:45 Heat of formation + Delta-G solvation = 1.874577 kcal Electronic energy + Delta-G solvation = -15024.639828 eV Core-core repulsion = 12829.145579 eV Total energy + Delta-G solvation = -2195.494248 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.22579 -34.44432 -33.06171 -30.87152 -28.97163 -27.95576 -25.57436 -23.61761 -21.91489 -20.81285 -19.09773 -18.27612 -16.29045 -15.04578 -14.64932 -14.00986 -13.69330 -13.44562 -13.38402 -12.51335 -12.27742 -11.90407 -11.50906 -11.32400 -11.23566 -10.89743 -10.84130 -10.66370 -10.53744 -10.37774 -10.04516 -9.81268 -9.54540 -9.43829 -9.14406 -9.11570 -8.49432 -6.68507 -5.63616 -2.93542 3.44108 3.49564 3.51178 4.57086 5.21547 5.35523 5.37645 5.60406 5.71898 5.77982 5.84174 5.90283 6.05988 6.09604 6.15017 6.26951 6.27252 6.33361 6.38422 6.50210 6.58107 6.65658 6.75323 6.82670 6.91346 6.96722 7.10522 7.14911 7.28662 7.67600 7.75517 7.92124 8.35863 9.31457 9.94058 10.63443 11.49145 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.030979 B = 0.013500 C = 0.010823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.632897 B = 2073.575495 C = 2586.534896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 H 0.063 0.937 4 C 0.184 3.816 5 N -0.592 5.592 6 C -0.217 4.217 7 H 0.078 0.922 8 C -0.010 4.010 9 N -0.921 5.921 10 Si 0.904 3.096 11 H -0.291 1.291 12 H -0.293 1.293 13 H -0.282 1.282 14 C 0.171 3.829 15 H 0.013 0.987 16 C -0.114 4.114 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.104 4.104 20 C -0.095 4.095 21 H 0.069 0.931 22 H 0.054 0.946 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.250 0.750 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.748 2.257 9.312 9.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.142 4.142 3 H 0.081 0.919 4 C 0.060 3.940 5 N -0.317 5.317 6 C -0.345 4.345 7 H 0.096 0.904 8 C -0.206 4.206 9 N -0.569 5.569 10 Si 0.735 3.265 11 H -0.218 1.218 12 H -0.220 1.220 13 H -0.208 1.208 14 C 0.063 3.937 15 H 0.030 0.970 16 C -0.153 4.153 17 C -0.150 4.150 18 C -0.150 4.150 19 C -0.142 4.142 20 C -0.115 4.115 21 H 0.088 0.912 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.092 0.908 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.681 2.214 9.069 9.360 hybrid contribution 0.245 -0.732 -0.702 1.044 sum -0.436 1.482 8.367 8.508 Atomic orbital electron populations 1.21715 0.96011 1.01411 1.00020 1.22751 0.94935 0.98664 0.97807 0.91863 1.21257 0.98298 0.83505 0.90961 1.44278 1.73854 1.08729 1.04859 1.18999 1.33857 0.92459 0.89220 0.90441 1.24765 1.02375 0.96756 0.96692 1.69976 1.55698 1.20326 1.10930 0.86203 0.77810 0.81915 0.80528 1.21844 1.21964 1.20759 1.20369 0.95203 0.91981 0.86109 0.96990 1.21263 0.95721 0.99881 0.98404 1.21454 0.96809 0.95321 1.01378 1.21605 0.99027 0.96283 0.98097 1.21564 0.95399 0.96640 1.00568 1.22439 0.95565 0.96975 0.96483 0.91231 0.92676 0.94164 0.93216 0.94265 0.93834 0.93980 0.93599 0.92218 0.93760 0.90335 0.93076 0.93206 0.90782 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.15 37.16 0.34 -1.98 16 2 C -0.12 -2.35 3.02 -88.26 -0.27 -2.62 16 3 H 0.06 1.14 7.98 -51.93 -0.41 0.73 16 4 C 0.18 4.49 4.20 -2.77 -0.01 4.48 16 5 N -0.59 -14.80 3.05 -164.31 -0.50 -15.30 16 6 C -0.22 -5.94 9.15 -15.07 -0.14 -6.08 16 7 H 0.08 2.07 6.61 -52.48 -0.35 1.72 16 8 C -0.01 -0.28 5.48 -17.43 -0.10 -0.38 16 9 N -0.92 -27.24 10.42 55.49 0.58 -26.66 16 10 Si 0.90 22.34 29.56 -169.99 -5.02 17.31 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.17 3.56 2.67 -68.17 -0.18 3.38 16 15 H 0.01 0.27 7.26 -51.93 -0.38 -0.10 16 16 C -0.11 -2.15 5.01 -27.71 -0.14 -2.28 16 17 C -0.11 -2.01 5.89 -26.67 -0.16 -2.17 16 18 C -0.11 -1.80 5.94 -26.34 -0.16 -1.96 16 19 C -0.10 -1.82 4.97 -26.45 -0.13 -1.95 16 20 C -0.10 -1.73 3.12 -88.37 -0.28 -2.00 16 21 H 0.07 1.14 8.13 -51.93 -0.42 0.71 16 22 H 0.05 1.01 7.07 -51.93 -0.37 0.64 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 1.06 7.21 -51.93 -0.37 0.69 16 26 H 0.04 1.19 7.14 -51.93 -0.37 0.82 16 27 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.19 6.92 -51.93 -0.36 0.83 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.67 7.52 -51.93 -0.39 1.28 16 32 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.52 6.89 -51.93 -0.36 1.16 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 260.99 15.07 3.93 3.93 Total: -1.00 -28.83 260.99 -8.10 -36.94 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.88 Total: -2.67 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -1.21 Total: -13.56 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.08 Total: -41.96 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.83 -8.10 -36.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537581.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.810 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds