Wall clock time and date at job start Thu Apr 9 2020 11:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.68776 * 2 1 4 4 C 1.54483 * 110.77547 * 236.71735 * 2 1 3 5 5 N 1.47397 * 107.16094 * 264.47837 * 4 2 1 6 6 C 1.36928 * 126.02387 * 181.48791 * 5 4 2 7 7 H 1.08007 * 119.99900 * 174.05701 * 6 5 4 8 8 C 1.38807 * 120.00369 * 354.05468 * 6 5 4 9 9 N 1.31619 * 119.99583 * 6.75635 * 8 6 5 10 10 Si 1.86796 * 120.00502 * 186.75618 * 8 6 5 11 11 H 1.48495 * 109.47358 * 94.98334 * 10 8 6 12 12 H 1.48506 * 109.47418 * 214.98538 * 10 8 6 13 13 H 1.48506 * 109.46851 * 334.98270 * 10 8 6 14 14 C 1.46531 * 107.95329 * 1.74450 * 5 4 2 15 15 H 1.09001 * 108.48588 * 90.06277 * 14 5 4 16 16 C 1.51176 * 113.00983 * 209.90748 * 14 5 4 17 17 C 1.52879 * 111.23940 * 66.37213 * 16 14 5 18 18 C 1.53242 * 108.41693 * 59.21052 * 17 16 14 19 19 C 1.53522 * 108.70817 * 296.47967 * 18 17 16 20 20 C 1.53014 * 110.11577 * 62.22555 * 19 18 17 21 21 H 1.09003 * 112.98166 * 72.30922 * 20 19 18 22 22 H 1.09000 * 109.47213 * 181.82701 * 1 2 3 23 23 H 1.09004 * 109.46898 * 301.82872 * 1 2 3 24 24 H 1.08995 * 109.47333 * 61.82203 * 1 2 3 25 25 H 1.08997 * 109.89942 * 145.08992 * 4 2 1 26 26 H 1.08998 * 110.04172 * 23.94327 * 4 2 1 27 27 H 0.97004 * 119.99983 * 179.97438 * 9 8 6 28 28 H 1.08997 * 109.12785 * 186.82306 * 16 14 5 29 29 H 1.09001 * 109.12526 * 305.92258 * 16 14 5 30 30 H 1.08994 * 109.67658 * 178.94405 * 17 16 14 31 31 H 1.09006 * 109.67409 * 299.48383 * 17 16 14 32 32 H 1.09007 * 109.60174 * 56.57489 * 18 17 16 33 33 H 1.09000 * 109.60341 * 177.05317 * 18 17 16 34 34 H 1.09001 * 109.64087 * 302.01960 * 19 18 17 35 35 H 1.09004 * 109.41290 * 182.29179 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0780 -0.7926 -1.2075 5 7 2.3589 -2.1613 -0.7379 6 6 2.8850 -3.1782 -1.4890 7 1 3.1411 -4.1178 -1.0219 8 6 3.0891 -3.0017 -2.8505 9 7 2.9034 -1.8182 -3.3958 10 14 3.6273 -4.4436 -3.9091 11 1 2.4348 -5.0746 -4.5294 12 1 4.5426 -3.9612 -4.9744 13 1 4.3326 -5.4412 -3.0649 14 6 1.9703 -2.2436 0.6725 15 1 0.9272 -2.5553 0.7259 16 6 2.7977 -3.2368 1.4564 17 6 4.2536 -2.7828 1.5629 18 6 4.2855 -1.4179 2.2588 19 6 3.5496 -0.3986 1.3778 20 6 2.0831 -0.8045 1.2162 21 1 1.4975 -0.6541 2.1232 22 1 -0.3634 -1.0271 0.0328 23 1 -0.3633 0.5420 0.8732 24 1 -0.3634 0.4852 -0.9058 25 1 2.9954 -0.3291 -1.5701 26 1 1.3354 -0.8191 -2.0050 27 1 3.0463 -1.6947 -4.3472 28 1 2.3807 -3.3369 2.4585 29 1 2.7611 -4.2050 0.9571 30 1 4.8218 -3.5062 2.1475 31 1 4.6849 -2.6963 0.5655 32 1 3.7951 -1.4909 3.2296 33 1 5.3194 -1.0994 2.3919 34 1 4.0204 -0.3557 0.3956 35 1 3.6005 0.5859 1.8429 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306537581.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:45 Heat of formation + Delta-G solvation = -14.380511 kcal Electronic energy + Delta-G solvation = -15025.344701 eV Core-core repulsion = 12829.145579 eV Total energy + Delta-G solvation = -2196.199122 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.83992 -36.04260 -34.91643 -32.69402 -30.52465 -29.59974 -27.48733 -25.36863 -23.40603 -22.46696 -20.75467 -19.88993 -18.28518 -16.65190 -16.55061 -15.76900 -15.27521 -15.06489 -14.91784 -14.23568 -13.73612 -13.48697 -13.25279 -13.01572 -12.89103 -12.74804 -12.50974 -12.27283 -12.17762 -12.02169 -11.82055 -11.45123 -11.32247 -11.11481 -10.68701 -10.63403 -10.58271 -8.75139 -7.79672 -5.10108 1.43590 1.45177 1.53411 2.52176 3.38570 3.65252 3.81349 3.98345 4.13424 4.29965 4.37494 4.42067 4.60365 4.66087 4.71202 4.80068 4.85085 4.87838 4.97934 5.08416 5.16834 5.21552 5.25611 5.35399 5.42151 5.45601 5.58663 5.62766 5.64491 5.77233 5.83663 5.85242 6.27962 7.17668 7.88714 8.56312 9.32298 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.030979 B = 0.013500 C = 0.010823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.632897 B = 2073.575495 C = 2586.534896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.115 4.115 3 H 0.078 0.922 4 C 0.195 3.805 5 N -0.607 5.607 6 C -0.216 4.216 7 H 0.081 0.919 8 C -0.072 4.072 9 N -0.954 5.954 10 Si 0.967 3.033 11 H -0.291 1.291 12 H -0.298 1.298 13 H -0.268 1.268 14 C 0.159 3.841 15 H 0.006 0.994 16 C -0.112 4.112 17 C -0.110 4.110 18 C -0.106 4.106 19 C -0.103 4.103 20 C -0.082 4.082 21 H 0.108 0.892 22 H 0.039 0.961 23 H 0.078 0.922 24 H 0.044 0.956 25 H -0.002 1.002 26 H 0.002 0.998 27 H 0.242 0.758 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 2.268 12.254 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.134 4.134 3 H 0.096 0.904 4 C 0.070 3.930 5 N -0.332 5.332 6 C -0.345 4.345 7 H 0.098 0.902 8 C -0.265 4.265 9 N -0.604 5.604 10 Si 0.796 3.204 11 H -0.219 1.219 12 H -0.225 1.225 13 H -0.193 1.193 14 C 0.053 3.947 15 H 0.024 0.976 16 C -0.150 4.150 17 C -0.148 4.148 18 C -0.143 4.143 19 C -0.141 4.141 20 C -0.101 4.101 21 H 0.126 0.874 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.063 0.937 25 H 0.016 0.984 26 H 0.021 0.979 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.933 2.210 12.051 12.288 hybrid contribution 0.316 -0.746 -1.584 1.779 sum -0.618 1.464 10.467 10.587 Atomic orbital electron populations 1.21649 0.94182 1.00995 1.01648 1.22679 0.96367 0.98592 0.95763 0.90398 1.20980 0.95417 0.84147 0.92482 1.44522 1.73324 1.08431 1.06952 1.19325 1.32446 0.93120 0.89646 0.90167 1.25544 1.03760 0.99048 0.98101 1.70203 1.57604 1.22131 1.10457 0.85210 0.77179 0.79273 0.78711 1.21870 1.22540 1.19298 1.20663 0.95023 0.94760 0.84227 0.97616 1.21244 0.96181 0.98017 0.99584 1.21406 0.96165 0.97599 0.99609 1.21586 1.00082 0.94064 0.98582 1.21538 0.94692 0.98860 0.99006 1.22469 0.96511 0.94121 0.96986 0.87401 0.94226 0.90318 0.93662 0.98393 0.97946 0.94872 0.89989 0.94315 0.91463 0.94851 0.89994 0.91887 0.95110 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.15 71.98 0.66 -3.49 16 2 C -0.11 -4.28 3.02 -9.27 -0.03 -4.31 16 3 H 0.08 2.68 7.98 -2.39 -0.02 2.67 16 4 C 0.19 9.90 4.20 86.71 0.36 10.27 16 5 N -0.61 -31.17 3.05 -673.76 -2.06 -33.23 16 6 C -0.22 -12.19 9.15 84.03 0.77 -11.42 16 7 H 0.08 4.38 6.61 -2.91 -0.02 4.36 16 8 C -0.07 -4.23 5.48 84.86 0.47 -3.77 16 9 N -0.95 -59.39 10.42 21.65 0.23 -59.16 16 10 Si 0.97 47.36 29.56 68.60 2.03 49.39 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 14 C 0.16 6.45 2.67 44.82 0.12 6.57 16 15 H 0.01 0.27 7.26 -2.39 -0.02 0.25 16 16 C -0.11 -3.97 5.01 29.96 0.15 -3.82 16 17 C -0.11 -3.74 5.89 30.63 0.18 -3.56 16 18 C -0.11 -2.99 5.94 30.85 0.18 -2.81 16 19 C -0.10 -3.35 4.97 30.77 0.15 -3.20 16 20 C -0.08 -2.72 3.12 -9.34 -0.03 -2.75 16 21 H 0.11 2.89 8.13 -2.39 -0.02 2.87 16 22 H 0.04 1.40 7.07 -2.39 -0.02 1.38 16 23 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.00 -0.13 7.21 -2.39 -0.02 -0.14 16 26 H 0.00 0.14 7.14 -2.39 -0.02 0.12 16 27 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 28 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.04 1.51 6.92 -2.39 -0.02 1.49 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 31 H 0.03 1.42 7.52 -2.38 -0.02 1.40 16 32 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.03 1.26 6.89 -2.39 -0.02 1.24 16 35 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -65.96 260.99 4.22 -61.75 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 1.04 Total: 3.55 kcal Atomic # 6 Polarization: -25.28 SS G_CDS: 2.99 Total: -22.29 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -1.83 Total: -92.39 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -65.96 4.22 -61.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306537581.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.365 kcal (2) G-P(sol) polarization free energy of solvation -65.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds