Wall clock time and date at job start Thu Apr 9 2020 11:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.93721 * 2 1 4 4 C 1.56090 * 111.06089 * 235.92008 * 2 1 3 5 5 N 1.49321 * 106.55412 * 218.20640 * 4 2 1 6 6 C 1.36934 * 127.11995 * 172.77993 * 5 4 2 7 7 H 1.07995 * 120.00632 * 180.02562 * 6 5 4 8 8 C 1.38814 * 119.99845 * 359.97438 * 6 5 4 9 9 N 1.31619 * 119.99710 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00324 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47156 * 59.99836 * 10 8 6 12 12 H 1.48500 * 109.47375 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47079 * 300.00281 * 10 8 6 14 14 C 1.41786 * 105.76966 * 352.77315 * 5 4 2 15 15 H 1.08994 * 105.37688 * 286.80030 * 14 5 4 16 16 C 1.49050 * 131.49549 * 158.56787 * 14 5 4 17 17 C 1.55877 * 104.21470 * 203.03167 * 16 14 5 18 18 C 1.56037 * 105.89223 * 5.16436 * 17 16 14 19 19 C 1.52560 * 102.45839 * 25.46597 * 18 17 16 20 20 H 1.09004 * 112.42837 * 75.76936 * 19 18 17 21 21 H 1.08997 * 109.46673 * 295.96214 * 1 2 3 22 22 H 1.08999 * 109.47183 * 55.95611 * 1 2 3 23 23 H 1.08995 * 109.47091 * 175.96338 * 1 2 3 24 24 H 1.09008 * 109.46685 * 184.04360 * 3 2 1 25 25 H 1.08996 * 109.47329 * 304.03786 * 3 2 1 26 26 H 1.08992 * 109.46891 * 64.04735 * 3 2 1 27 27 H 1.09000 * 110.04202 * 337.48006 * 4 2 1 28 28 H 1.08996 * 110.04104 * 98.93235 * 4 2 1 29 29 H 0.97007 * 120.00137 * 179.97438 * 9 8 6 30 30 H 1.08994 * 110.48003 * 84.34506 * 16 14 5 31 31 H 1.09003 * 110.47847 * 321.71037 * 16 14 5 32 32 H 1.08998 * 110.16414 * 246.06594 * 17 16 14 33 33 H 1.08998 * 110.23391 * 124.30332 * 17 16 14 34 34 H 1.08994 * 110.80789 * 143.70910 * 18 17 16 35 35 H 1.08998 * 110.81065 * 267.22073 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0768 1.4290 0.0000 4 6 2.0910 -0.8162 -1.2065 5 7 3.2934 -1.5454 -0.7045 6 6 4.0265 -2.4891 -1.3732 7 1 4.8810 -2.9466 -0.8969 8 6 3.6707 -2.8585 -2.6631 9 7 2.6291 -2.3013 -3.2435 10 14 4.6703 -4.1463 -3.5752 11 1 4.6436 -5.4225 -2.8164 12 1 4.0879 -4.3609 -4.9243 13 1 6.0736 -3.6798 -3.7098 14 6 3.5194 -1.0586 0.6079 15 1 3.9181 -0.0525 0.4782 16 6 4.2590 -1.6408 1.7635 17 6 3.6388 -0.9373 3.0086 18 6 2.4608 -0.0695 2.4664 19 6 2.0793 -0.7983 1.1815 20 1 1.5187 -1.7132 1.3732 21 1 -0.3632 0.4499 0.9240 22 1 -0.3633 0.5753 -0.8515 23 1 -0.3633 -1.0251 -0.0723 24 1 3.1641 1.4019 -0.0725 25 1 1.6694 1.9739 -0.8515 26 1 1.7866 1.9290 0.9240 27 1 1.3425 -1.5269 -1.5570 28 1 2.3736 -0.1417 -2.0147 29 1 2.3806 -2.5592 -4.1451 30 1 5.3227 -1.4152 1.6882 31 1 4.0992 -2.7178 1.8150 32 1 4.3822 -0.3025 3.4906 33 1 3.2651 -1.6796 3.7138 34 1 1.6284 -0.0636 3.1700 35 1 2.7946 0.9456 2.2513 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306610117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:51 Heat of formation + Delta-G solvation = 24.087711 kcal Electronic energy + Delta-G solvation = -14866.237218 eV Core-core repulsion = 12671.706203 eV Total energy + Delta-G solvation = -2194.531015 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.80318 -34.53098 -33.50928 -30.82968 -27.47348 -26.84679 -26.40976 -25.40577 -22.73429 -20.15294 -19.15346 -17.78802 -16.38908 -15.59688 -14.61428 -13.98569 -13.73363 -13.48413 -12.97820 -12.83334 -12.21968 -11.91196 -11.77932 -11.28388 -11.15148 -10.91544 -10.83933 -10.72965 -10.67720 -10.53576 -10.12425 -9.87252 -9.56264 -9.47658 -9.26261 -9.12325 -8.55136 -6.68055 -5.66468 -2.98123 3.43635 3.47829 3.48988 4.54246 4.86704 5.24183 5.32104 5.53875 5.60714 5.65408 5.71938 5.79159 6.02102 6.05945 6.12415 6.18316 6.21734 6.28189 6.39855 6.44942 6.46726 6.53583 6.64188 6.71169 6.79060 6.90678 6.94131 7.08346 7.32080 7.63915 7.70363 7.85587 8.32235 9.23892 9.91520 10.63588 11.46743 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.011822 C = 0.009560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.274658 B = 2367.899542 C = 2928.299287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.086 4.086 3 C -0.130 4.130 4 C 0.191 3.809 5 N -0.583 5.583 6 C -0.227 4.227 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.923 5.923 10 Si 0.909 3.091 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.159 3.841 15 H 0.000 1.000 16 C -0.110 4.110 17 C -0.116 4.116 18 C -0.111 4.111 19 C -0.126 4.126 20 H 0.076 0.924 21 H 0.044 0.956 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.252 0.748 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 4.823 9.129 10.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.187 4.187 4 C 0.068 3.932 5 N -0.305 5.305 6 C -0.355 4.355 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.570 5.570 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.049 3.951 15 H 0.017 0.983 16 C -0.148 4.148 17 C -0.154 4.154 18 C -0.149 4.149 19 C -0.146 4.146 20 H 0.094 0.906 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.714 4.716 8.869 10.190 hybrid contribution 0.506 -0.751 -0.578 1.074 sum -1.208 3.965 8.290 9.269 Atomic orbital electron populations 1.21668 0.95230 1.01315 1.00213 1.21557 0.94431 0.94951 0.97697 1.21805 1.01297 0.95568 1.00074 1.22042 0.88034 0.92751 0.90421 1.43435 1.31760 1.45955 1.09373 1.19023 1.07012 1.13481 0.95991 0.90503 1.24781 0.98280 1.00156 0.97237 1.69905 1.27601 1.45260 1.14270 0.86239 0.79324 0.81446 0.79018 1.21244 1.21638 1.21230 1.20011 0.92819 0.95603 0.86668 0.98327 1.21326 0.98819 1.00226 0.94470 1.22781 0.97190 0.98263 0.97140 1.22066 0.97107 0.98845 0.96909 1.23004 1.00109 0.98396 0.93091 0.90600 0.93739 0.93247 0.92864 0.92220 0.93326 0.93610 0.92179 0.94582 0.93745 0.92446 0.92017 0.92512 0.92311 0.92778 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.65 37.16 0.32 -1.81 16 2 C -0.09 -1.65 0.93 -152.95 -0.14 -1.79 16 3 C -0.13 -2.25 7.42 37.16 0.28 -1.97 16 4 C 0.19 4.74 4.70 -0.82 0.00 4.73 16 5 N -0.58 -15.32 3.29 -164.39 -0.54 -15.86 16 6 C -0.23 -6.46 10.31 -15.06 -0.16 -6.62 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -27.56 10.55 55.49 0.59 -26.98 16 10 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.16 3.45 2.97 -70.06 -0.21 3.24 16 15 H 0.00 -0.01 5.38 -51.93 -0.28 -0.29 16 16 C -0.11 -2.03 6.70 -27.13 -0.18 -2.21 16 17 C -0.12 -1.72 6.94 -23.57 -0.16 -1.88 16 18 C -0.11 -1.72 6.03 -25.33 -0.15 -1.87 16 19 C -0.13 -2.38 2.88 -88.67 -0.26 -2.63 16 20 H 0.08 1.53 8.13 -51.93 -0.42 1.10 16 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.93 8.06 -51.93 -0.42 0.51 16 24 H 0.06 1.11 6.21 -51.92 -0.32 0.79 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.68 6.96 -51.93 -0.36 0.32 16 27 H 0.06 1.65 6.82 -51.93 -0.35 1.29 16 28 H 0.04 0.98 7.70 -51.93 -0.40 0.58 16 29 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.01 6.17 -51.93 -0.32 0.69 16 LS Contribution 264.43 15.07 3.98 3.98 Total: -1.00 -29.90 264.43 -7.56 -37.46 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -5.81 Total: -2.93 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.76 Total: -13.14 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.05 Total: -42.84 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.90 -7.56 -37.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.544 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds