Wall clock time and date at job start Thu Apr 9 2020 11:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.93721 * 2 1 4 4 C 1.56090 * 111.06089 * 235.92008 * 2 1 3 5 5 N 1.49321 * 106.55412 * 218.20640 * 4 2 1 6 6 C 1.36934 * 127.11995 * 172.77993 * 5 4 2 7 7 H 1.07995 * 120.00632 * 180.02562 * 6 5 4 8 8 C 1.38814 * 119.99845 * 359.97438 * 6 5 4 9 9 N 1.31619 * 119.99710 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00324 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47156 * 59.99836 * 10 8 6 12 12 H 1.48500 * 109.47375 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47079 * 300.00281 * 10 8 6 14 14 C 1.41786 * 105.76966 * 352.77315 * 5 4 2 15 15 H 1.08994 * 105.37688 * 286.80030 * 14 5 4 16 16 C 1.49050 * 131.49549 * 158.56787 * 14 5 4 17 17 C 1.55877 * 104.21470 * 203.03167 * 16 14 5 18 18 C 1.56037 * 105.89223 * 5.16436 * 17 16 14 19 19 C 1.52560 * 102.45839 * 25.46597 * 18 17 16 20 20 H 1.09004 * 112.42837 * 75.76936 * 19 18 17 21 21 H 1.08997 * 109.46673 * 295.96214 * 1 2 3 22 22 H 1.08999 * 109.47183 * 55.95611 * 1 2 3 23 23 H 1.08995 * 109.47091 * 175.96338 * 1 2 3 24 24 H 1.09008 * 109.46685 * 184.04360 * 3 2 1 25 25 H 1.08996 * 109.47329 * 304.03786 * 3 2 1 26 26 H 1.08992 * 109.46891 * 64.04735 * 3 2 1 27 27 H 1.09000 * 110.04202 * 337.48006 * 4 2 1 28 28 H 1.08996 * 110.04104 * 98.93235 * 4 2 1 29 29 H 0.97007 * 120.00137 * 179.97438 * 9 8 6 30 30 H 1.08994 * 110.48003 * 84.34506 * 16 14 5 31 31 H 1.09003 * 110.47847 * 321.71037 * 16 14 5 32 32 H 1.08998 * 110.16414 * 246.06594 * 17 16 14 33 33 H 1.08998 * 110.23391 * 124.30332 * 17 16 14 34 34 H 1.08994 * 110.80789 * 143.70910 * 18 17 16 35 35 H 1.08998 * 110.81065 * 267.22073 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0768 1.4290 0.0000 4 6 2.0910 -0.8162 -1.2065 5 7 3.2934 -1.5454 -0.7045 6 6 4.0265 -2.4891 -1.3732 7 1 4.8810 -2.9466 -0.8969 8 6 3.6707 -2.8585 -2.6631 9 7 2.6291 -2.3013 -3.2435 10 14 4.6703 -4.1463 -3.5752 11 1 4.6436 -5.4225 -2.8164 12 1 4.0879 -4.3609 -4.9243 13 1 6.0736 -3.6798 -3.7098 14 6 3.5194 -1.0586 0.6079 15 1 3.9181 -0.0525 0.4782 16 6 4.2590 -1.6408 1.7635 17 6 3.6388 -0.9373 3.0086 18 6 2.4608 -0.0695 2.4664 19 6 2.0793 -0.7983 1.1815 20 1 1.5187 -1.7132 1.3732 21 1 -0.3632 0.4499 0.9240 22 1 -0.3633 0.5753 -0.8515 23 1 -0.3633 -1.0251 -0.0723 24 1 3.1641 1.4019 -0.0725 25 1 1.6694 1.9739 -0.8515 26 1 1.7866 1.9290 0.9240 27 1 1.3425 -1.5269 -1.5570 28 1 2.3736 -0.1417 -2.0147 29 1 2.3806 -2.5592 -4.1451 30 1 5.3227 -1.4152 1.6882 31 1 4.0992 -2.7178 1.8150 32 1 4.3822 -0.3025 3.4906 33 1 3.2651 -1.6796 3.7138 34 1 1.6284 -0.0636 3.1700 35 1 2.7946 0.9456 2.2513 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306610117.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:51 Heat of formation + Delta-G solvation = 6.708809 kcal Electronic energy + Delta-G solvation = -14866.990823 eV Core-core repulsion = 12671.706203 eV Total energy + Delta-G solvation = -2195.284620 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.40630 -36.13207 -35.31769 -32.83208 -28.86893 -28.35053 -28.13282 -27.17937 -24.60541 -21.58312 -20.90943 -19.35930 -18.36375 -17.24816 -16.40188 -15.76742 -15.36685 -15.14092 -14.43816 -14.38678 -13.88926 -13.45515 -13.29593 -13.05739 -12.85659 -12.62355 -12.52355 -12.32801 -12.27355 -12.00201 -11.87336 -11.51930 -11.19782 -11.13333 -10.85857 -10.81034 -10.61978 -8.76752 -7.85669 -5.19291 1.42279 1.45969 1.52249 2.49073 3.28623 3.31501 3.80972 3.93794 4.02845 4.19812 4.28257 4.33607 4.61686 4.69546 4.71679 4.81108 4.88348 4.91861 5.00809 5.03389 5.12125 5.18925 5.21510 5.23980 5.33309 5.33797 5.49093 5.53273 5.59970 5.68054 5.78115 5.86112 6.22380 7.06651 7.80647 8.55531 9.26558 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035467 B = 0.011822 C = 0.009560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.274658 B = 2367.899542 C = 2928.299287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 C -0.123 4.123 4 C 0.197 3.803 5 N -0.607 5.607 6 C -0.241 4.241 7 H 0.079 0.921 8 C -0.068 4.068 9 N -0.952 5.952 10 Si 0.977 3.023 11 H -0.277 1.277 12 H -0.293 1.293 13 H -0.277 1.277 14 C 0.135 3.865 15 H -0.005 1.005 16 C -0.112 4.112 17 C -0.105 4.105 18 C -0.103 4.103 19 C -0.113 4.113 20 H 0.060 0.940 21 H 0.079 0.921 22 H 0.052 0.948 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.021 0.979 28 H -0.003 1.003 29 H 0.247 0.753 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 5.621 11.537 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.079 4.079 3 C -0.180 4.180 4 C 0.073 3.927 5 N -0.330 5.330 6 C -0.370 4.370 7 H 0.097 0.903 8 C -0.260 4.260 9 N -0.602 5.602 10 Si 0.805 3.195 11 H -0.203 1.203 12 H -0.219 1.219 13 H -0.204 1.204 14 C 0.027 3.973 15 H 0.012 0.988 16 C -0.151 4.151 17 C -0.143 4.143 18 C -0.140 4.140 19 C -0.133 4.133 20 H 0.079 0.921 21 H 0.098 0.902 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.039 0.961 28 H 0.015 0.985 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.696 5.525 11.319 12.709 hybrid contribution 0.536 -0.993 -1.342 1.754 sum -1.160 4.532 9.976 11.019 Atomic orbital electron populations 1.21632 0.93113 1.00950 1.02221 1.21513 0.96055 0.95400 0.94952 1.21736 0.99932 0.94223 1.02137 1.21854 0.86960 0.91664 0.92185 1.43718 1.31981 1.45685 1.11572 1.19409 1.07351 1.13755 0.96533 0.90306 1.25642 0.99665 1.02537 0.98204 1.70142 1.29203 1.46695 1.14121 0.85179 0.77964 0.79038 0.77357 1.20280 1.21914 1.20354 1.20376 0.95717 0.95299 0.85919 0.98821 1.21406 0.98991 0.99732 0.94932 1.22750 0.97405 0.98671 0.95435 1.22081 0.98178 0.98751 0.95021 1.22935 0.97406 0.98314 0.94656 0.92127 0.90236 0.92858 0.94292 0.94105 0.93042 0.89934 0.96080 0.98471 0.94434 0.92309 0.93389 0.89981 0.90518 0.89841 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 8.65 71.98 0.62 -3.28 16 2 C -0.08 -2.97 0.93 -51.17 -0.05 -3.02 16 3 C -0.12 -4.02 7.42 71.98 0.53 -3.48 16 4 C 0.20 10.25 4.70 86.90 0.41 10.65 16 5 N -0.61 -33.02 3.29 -674.01 -2.22 -35.24 16 6 C -0.24 -14.22 10.31 84.03 0.87 -13.35 16 7 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 8 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 9 N -0.95 -59.60 10.55 21.65 0.23 -59.37 16 10 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 C 0.14 5.87 2.97 46.06 0.14 6.01 16 15 H -0.01 -0.24 5.38 -2.39 -0.01 -0.25 16 16 C -0.11 -3.99 6.70 30.33 0.20 -3.79 16 17 C -0.10 -2.70 6.94 32.64 0.23 -2.47 16 18 C -0.10 -2.71 6.03 31.50 0.19 -2.52 16 19 C -0.11 -4.09 2.88 -9.53 -0.03 -4.12 16 20 H 0.06 2.37 8.13 -2.38 -0.02 2.35 16 21 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.04 1.34 8.06 -2.39 -0.02 1.32 16 24 H 0.04 1.47 6.21 -2.38 -0.01 1.46 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.08 2.10 6.96 -2.39 -0.02 2.08 16 27 H 0.02 1.23 6.82 -2.39 -0.02 1.21 16 28 H 0.00 -0.17 7.70 -2.39 -0.02 -0.19 16 29 H 0.25 14.99 8.31 -92.70 -0.77 14.21 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.08 1.93 6.17 -2.39 -0.01 1.92 16 Total: -1.00 -67.96 264.43 4.66 -63.30 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.04 Total: 4.76 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 3.58 Total: -22.93 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -1.99 Total: -94.61 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -67.96 4.66 -63.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610117.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.012 kcal (2) G-P(sol) polarization free energy of solvation -67.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds