Wall clock time and date at job start Thu Apr 9 2020 11:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 110.96464 * 2 1 4 4 C 1.56081 * 111.06722 * 235.94102 * 2 1 3 5 5 N 1.49324 * 106.55400 * 265.79015 * 4 2 1 6 6 C 1.36938 * 127.11833 * 187.24304 * 5 4 2 7 7 H 1.07998 * 120.00043 * 179.97438 * 6 5 4 8 8 C 1.38812 * 119.99498 * 359.97438 * 6 5 4 9 9 N 1.31614 * 120.00000 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99862 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47140 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47360 * 119.99500 * 10 8 6 13 13 H 1.48504 * 109.46919 * 239.99911 * 10 8 6 14 14 C 1.41783 * 105.76751 * 7.22516 * 5 4 2 15 15 H 1.08999 * 105.36012 * 73.18317 * 14 5 4 16 16 C 1.49044 * 131.51005 * 201.39608 * 14 5 4 17 17 C 1.55881 * 104.21111 * 157.01328 * 16 14 5 18 18 C 1.56953 * 106.19005 * 354.33631 * 17 16 14 19 19 C 1.52561 * 102.03900 * 335.38511 * 18 17 16 20 20 H 1.08999 * 112.43474 * 283.12185 * 19 18 17 21 21 H 1.08997 * 109.47243 * 295.93750 * 1 2 3 22 22 H 1.08999 * 109.47195 * 55.94079 * 1 2 3 23 23 H 1.09004 * 109.46603 * 175.93717 * 1 2 3 24 24 H 1.08997 * 109.46866 * 184.05548 * 3 2 1 25 25 H 1.09000 * 109.47199 * 304.05845 * 3 2 1 26 26 H 1.09003 * 109.46980 * 64.06097 * 3 2 1 27 27 H 1.09003 * 110.04130 * 25.06215 * 4 2 1 28 28 H 1.08999 * 110.04031 * 146.52141 * 4 2 1 29 29 H 0.97011 * 119.99791 * 180.02562 * 9 8 6 30 30 H 1.09007 * 110.48427 * 275.69194 * 16 14 5 31 31 H 1.08999 * 110.48488 * 38.19285 * 16 14 5 32 32 H 1.09001 * 110.17150 * 113.93150 * 17 16 14 33 33 H 1.08996 * 110.16395 * 235.65369 * 17 16 14 34 34 H 1.09004 * 111.28287 * 217.16308 * 18 17 16 35 35 H 1.08995 * 110.74037 * 93.37135 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0775 1.4288 0.0000 4 6 2.0911 -0.8157 -1.2066 5 7 2.3421 -2.1995 -0.7048 6 6 2.9612 -3.2215 -1.3737 7 1 3.0828 -4.1831 -0.8974 8 6 3.4324 -3.0214 -2.6640 9 7 3.2836 -1.8497 -3.2446 10 14 4.2776 -4.4153 -3.5763 11 1 4.3190 -5.6206 -2.7098 12 1 3.5235 -4.7234 -4.8178 13 1 5.6627 -4.0098 -3.9260 14 6 1.8071 -2.2363 0.6077 15 1 0.7249 -2.2484 0.4782 16 6 2.0859 -3.1355 1.7632 17 6 1.6505 -2.3048 3.0083 18 6 1.2702 -0.8795 2.4723 19 6 2.0793 -0.7986 1.1814 20 1 3.1351 -0.5989 1.3641 21 1 -0.3633 0.4495 0.9241 22 1 -0.3633 0.5755 -0.8514 23 1 -0.3633 -1.0251 -0.0728 24 1 3.1647 1.4012 -0.0727 25 1 1.6700 1.9740 -0.8514 26 1 1.7877 1.9289 0.9242 27 1 1.3597 -0.8383 -2.0146 28 1 3.0224 -0.3710 -1.5574 29 1 3.6126 -1.7100 -4.1464 30 1 1.4945 -4.0481 1.6878 31 1 3.1483 -3.3737 1.8135 32 1 0.7915 -2.7718 3.4901 33 1 2.4778 -2.2229 3.7133 34 1 1.5756 -0.0999 3.1702 35 1 0.2020 -0.8177 2.2644 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306610118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:52 Heat of formation + Delta-G solvation = 23.805386 kcal Electronic energy + Delta-G solvation = -14863.941783 eV Core-core repulsion = 12669.398526 eV Total energy + Delta-G solvation = -2194.543257 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.77671 -34.48698 -33.51503 -30.82907 -27.48575 -26.85062 -26.40035 -25.40207 -22.73577 -20.16569 -19.15709 -17.78241 -16.39511 -15.59308 -14.61850 -13.97379 -13.72608 -13.48969 -12.97335 -12.83649 -12.22127 -11.90403 -11.77877 -11.28178 -11.15294 -10.91565 -10.83891 -10.75086 -10.70411 -10.52390 -10.09637 -9.86908 -9.55962 -9.47330 -9.25762 -9.13655 -8.56147 -6.68334 -5.67136 -2.98700 3.42384 3.48049 3.50335 4.53726 4.86647 5.23880 5.31118 5.53838 5.59502 5.65382 5.72013 5.78945 6.02599 6.05476 6.11649 6.18013 6.21421 6.27956 6.39580 6.44909 6.46290 6.53458 6.64040 6.71066 6.78890 6.90366 6.94019 7.08275 7.32003 7.63741 7.70620 7.85562 8.31593 9.23437 9.91075 10.63000 11.46207 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.035476 B = 0.011815 C = 0.009557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.078364 B = 2369.220966 C = 2929.205005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 C -0.127 4.127 4 C 0.191 3.809 5 N -0.583 5.583 6 C -0.225 4.225 7 H 0.078 0.922 8 C -0.009 4.009 9 N -0.922 5.922 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.160 3.840 15 H 0.000 1.000 16 C -0.110 4.110 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.126 4.126 20 H 0.075 0.925 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.251 0.749 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 3.318 9.208 10.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.087 4.087 3 C -0.184 4.184 4 C 0.067 3.933 5 N -0.305 5.305 6 C -0.353 4.353 7 H 0.096 0.904 8 C -0.205 4.205 9 N -0.570 5.570 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.050 3.950 15 H 0.017 0.983 16 C -0.148 4.148 17 C -0.153 4.153 18 C -0.149 4.149 19 C -0.146 4.146 20 H 0.093 0.907 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.806 3.248 8.961 10.263 hybrid contribution 0.524 -0.714 -0.603 1.071 sum -3.282 2.534 8.358 9.330 Atomic orbital electron populations 1.21806 0.95226 1.01647 1.00069 1.21571 0.94739 0.94660 0.97749 1.21670 1.00720 0.95825 1.00211 1.22043 0.98836 0.81961 0.90433 1.43453 1.67949 1.09793 1.09354 1.19119 1.29646 0.90646 0.95935 0.90384 1.24783 1.01440 0.97053 0.97247 1.69927 1.51466 1.21463 1.14142 0.86087 0.79013 0.81236 0.79736 1.20541 1.21816 1.21833 1.19987 0.96143 0.92255 0.86658 0.98319 1.21318 1.01182 0.97834 0.94472 1.22928 0.99987 0.95300 0.97124 1.22213 0.99991 0.95836 0.96890 1.23005 0.98740 0.99793 0.93054 0.90675 0.93614 0.93334 0.92216 0.92867 0.93247 0.93741 0.94571 0.92183 0.93850 0.92448 0.92011 0.92475 0.92388 0.92658 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 7.44 37.16 0.28 -1.97 16 2 C -0.09 -1.67 0.93 -152.95 -0.14 -1.81 16 3 C -0.13 -2.13 8.65 37.16 0.32 -1.81 16 4 C 0.19 4.73 4.70 -0.82 0.00 4.73 16 5 N -0.58 -15.31 3.29 -164.40 -0.54 -15.85 16 6 C -0.23 -6.41 10.31 -15.06 -0.16 -6.57 16 7 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 8 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 9 N -0.92 -27.56 10.55 55.49 0.59 -26.97 16 10 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 14 C 0.16 3.46 2.97 -70.07 -0.21 3.25 16 15 H 0.00 -0.01 5.40 -51.93 -0.28 -0.29 16 16 C -0.11 -2.02 6.70 -27.13 -0.18 -2.20 16 17 C -0.12 -1.71 6.96 -23.05 -0.16 -1.87 16 18 C -0.11 -1.71 6.14 -24.82 -0.15 -1.86 16 19 C -0.13 -2.37 2.83 -88.68 -0.25 -2.62 16 20 H 0.07 1.51 8.12 -51.93 -0.42 1.09 16 21 H 0.04 0.68 6.94 -51.93 -0.36 0.32 16 22 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.06 1.11 6.21 -51.93 -0.32 0.79 16 24 H 0.05 0.93 8.06 -51.93 -0.42 0.51 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.98 7.69 -51.93 -0.40 0.58 16 28 H 0.06 1.65 6.82 -51.93 -0.35 1.29 16 29 H 0.25 7.27 8.31 -40.81 -0.34 6.93 16 30 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.00 6.18 -51.93 -0.32 0.68 16 LS Contribution 264.53 15.07 3.99 3.99 Total: -1.00 -29.93 264.53 -7.55 -37.48 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.81 Total: -3.02 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.75 Total: -13.10 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.04 Total: -42.82 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.93 -7.55 -37.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.285 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds