Wall clock time and date at job start Thu Apr 9 2020 11:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.28837 * 2 1 4 4 C 1.53824 * 110.24849 * 238.01630 * 2 1 3 5 5 N 1.47080 * 106.31880 * 261.47059 * 4 2 1 6 6 C 1.36943 * 126.31946 * 150.41686 * 5 4 2 7 7 H 1.07998 * 119.99561 * 179.97438 * 6 5 4 8 8 C 1.38811 * 119.99968 * 359.97438 * 6 5 4 9 9 N 1.31614 * 119.99986 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99789 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47370 * 59.99903 * 10 8 6 12 12 H 1.48502 * 109.46879 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46789 * 299.99629 * 10 8 6 14 14 C 1.47059 * 107.36250 * 330.44394 * 5 4 2 15 15 H 1.08996 * 110.83305 * 265.89251 * 14 5 4 16 16 C 1.53485 * 109.43228 * 142.51406 * 14 5 4 17 17 C 1.53772 * 107.22030 * 241.03949 * 16 14 5 18 18 C 1.53918 * 105.80574 * 19.66590 * 17 16 14 19 19 C 1.53720 * 105.46295 * 331.70403 * 18 17 16 20 20 H 1.09002 * 111.41842 * 263.81244 * 19 18 17 21 21 H 1.08990 * 109.47568 * 291.06910 * 1 2 3 22 22 H 1.09013 * 109.46893 * 51.07047 * 1 2 3 23 23 H 1.08998 * 109.47240 * 171.06036 * 1 2 3 24 24 H 1.09001 * 109.47014 * 181.98345 * 3 2 1 25 25 H 1.08998 * 109.47414 * 301.98119 * 3 2 1 26 26 H 1.09001 * 109.47069 * 61.98428 * 3 2 1 27 27 H 1.09001 * 110.08893 * 20.68965 * 4 2 1 28 28 H 1.09004 * 110.08558 * 142.26026 * 4 2 1 29 29 H 0.97003 * 119.99906 * 180.02562 * 9 8 6 30 30 H 1.09004 * 109.89640 * 0.36020 * 16 14 5 31 31 H 1.09002 * 109.89718 * 121.40395 * 16 14 5 32 32 H 1.08994 * 110.14365 * 260.61073 * 17 16 14 33 33 H 1.09006 * 110.25394 * 138.77420 * 17 16 14 34 34 H 1.08998 * 110.26371 * 212.68085 * 18 17 16 35 35 H 1.08997 * 110.26191 * 90.72781 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 6 2.0624 -0.7644 -1.2241 5 7 2.4018 -2.1154 -0.7521 6 6 2.3648 -3.2666 -1.4930 7 1 2.6371 -4.2087 -1.0407 8 6 1.9773 -3.2224 -2.8252 9 7 1.6450 -2.0742 -3.3761 10 14 1.9275 -4.7925 -3.8359 11 1 0.9757 -5.7497 -3.2170 12 1 1.4840 -4.4778 -5.2178 13 1 3.2828 -5.3983 -3.8764 14 6 2.7877 -2.0021 0.6624 15 1 3.8680 -1.8975 0.7623 16 6 2.2669 -3.2229 1.4332 17 6 1.3001 -2.7030 2.5100 18 6 0.8809 -1.2945 2.0522 19 6 2.0622 -0.7643 1.2238 20 1 2.7228 -0.1407 1.8263 21 1 -0.3634 0.3694 0.9589 22 1 -0.3633 0.6458 -0.7995 23 1 -0.3633 -1.0152 -0.1597 24 1 3.1499 1.4197 -0.0356 25 1 1.6760 1.9646 -0.8717 26 1 1.7337 1.9432 0.9073 27 1 1.2935 -0.8193 -1.9947 28 1 2.9515 -0.2705 -1.6162 29 1 1.3738 -2.0434 -4.3070 30 1 1.7387 -3.8925 0.7544 31 1 3.0992 -3.7495 1.9003 32 1 1.8055 -2.6500 3.4742 33 1 0.4267 -3.3517 2.5779 34 1 0.7074 -0.6529 2.9161 35 1 -0.0172 -1.3493 1.4370 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306610119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:54 Heat of formation + Delta-G solvation = 16.806699 kcal Electronic energy + Delta-G solvation = -15006.040869 eV Core-core repulsion = 12811.194126 eV Total energy + Delta-G solvation = -2194.846743 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39973 -34.16268 -33.71652 -30.82922 -27.56748 -27.13367 -26.03269 -25.59236 -22.48327 -19.71929 -19.22805 -17.68595 -16.59285 -15.31873 -14.89573 -14.33962 -13.42482 -13.29783 -12.90201 -12.76315 -12.23690 -12.11316 -11.56998 -11.11472 -10.94309 -10.79737 -10.74331 -10.55822 -10.51309 -10.31099 -10.00628 -9.73217 -9.55938 -9.46250 -9.43487 -9.13374 -8.59754 -6.74997 -5.55377 -2.98798 3.43399 3.47745 3.48827 4.54210 5.21267 5.27979 5.30345 5.59042 5.70082 5.75174 5.80856 5.91909 6.16875 6.19918 6.23089 6.28279 6.30847 6.36368 6.49304 6.53799 6.58865 6.64579 6.72683 6.76324 6.85090 7.00003 7.05088 7.20951 7.26313 7.63313 7.71091 7.99542 8.52416 9.31296 9.92942 10.61180 11.45315 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.012935 C = 0.010540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.805486 B = 2164.114832 C = 2655.931400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.088 4.088 3 C -0.129 4.129 4 C 0.148 3.852 5 N -0.592 5.592 6 C -0.212 4.212 7 H 0.077 0.923 8 C -0.014 4.014 9 N -0.922 5.922 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.287 1.287 14 C 0.161 3.839 15 H 0.025 0.975 16 C -0.131 4.131 17 C -0.117 4.117 18 C -0.126 4.126 19 C -0.092 4.092 20 H 0.065 0.935 21 H 0.042 0.958 22 H 0.044 0.956 23 H 0.062 0.938 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.121 0.879 28 H 0.003 0.997 29 H 0.251 0.749 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 3.262 8.610 9.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.089 4.089 3 C -0.187 4.187 4 C 0.023 3.977 5 N -0.315 5.315 6 C -0.341 4.341 7 H 0.095 0.905 8 C -0.209 4.209 9 N -0.571 5.571 10 Si 0.742 3.258 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.214 1.214 14 C 0.053 3.947 15 H 0.042 0.958 16 C -0.169 4.169 17 C -0.155 4.155 18 C -0.163 4.163 19 C -0.111 4.111 20 H 0.084 0.916 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.138 0.862 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.458 3.168 8.363 9.061 hybrid contribution 0.162 -0.767 -0.476 0.917 sum -1.296 2.401 7.886 8.345 Atomic orbital electron populations 1.21870 0.95368 1.01449 0.99376 1.21533 0.95204 0.94460 0.97693 1.21799 1.00337 0.96251 1.00286 1.21959 0.99366 0.82767 0.93605 1.44515 1.77519 1.04138 1.05330 1.18979 1.37469 0.85893 0.91747 0.90473 1.24741 1.02374 0.96968 0.96800 1.69666 1.52332 1.22639 1.12479 0.86190 0.77704 0.82422 0.79443 1.21294 1.21661 1.21355 1.21255 0.95206 0.91986 0.86210 0.95757 1.22346 0.98060 0.99309 0.97206 1.22036 0.98694 0.96811 0.97925 1.22493 0.99888 0.95315 0.98646 1.22356 0.96334 0.96801 0.95636 0.91648 0.93946 0.93730 0.91949 0.93261 0.93100 0.93957 0.86207 0.97908 0.93811 0.90180 0.93605 0.93218 0.92751 0.93281 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 6.90 37.16 0.26 -2.00 16 2 C -0.09 -1.71 1.04 -153.67 -0.16 -1.87 16 3 C -0.13 -2.18 8.22 37.16 0.31 -1.87 16 4 C 0.15 3.67 5.27 -3.30 -0.02 3.65 16 5 N -0.59 -15.22 3.28 -163.36 -0.54 -15.76 16 6 C -0.21 -5.89 9.13 -15.06 -0.14 -6.03 16 7 H 0.08 2.07 7.03 -52.49 -0.37 1.70 16 8 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 9 N -0.92 -26.98 10.06 55.49 0.56 -26.43 16 10 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.16 3.48 4.05 -66.82 -0.27 3.21 16 15 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 16 C -0.13 -2.54 6.22 -26.08 -0.16 -2.70 16 17 C -0.12 -1.92 6.81 -25.85 -0.18 -2.10 16 18 C -0.13 -2.11 5.37 -25.88 -0.14 -2.25 16 19 C -0.09 -1.72 3.42 -89.28 -0.31 -2.02 16 20 H 0.07 1.13 7.76 -51.93 -0.40 0.73 16 21 H 0.04 0.66 6.96 -51.93 -0.36 0.30 16 22 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 23 H 0.06 1.27 7.02 -51.93 -0.36 0.90 16 24 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.12 3.31 5.17 -51.93 -0.27 3.05 16 28 H 0.00 0.08 7.77 -51.93 -0.40 -0.32 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.08 1.74 6.31 -51.93 -0.33 1.42 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.49 4.53 -51.93 -0.24 1.26 16 LS Contribution 260.21 15.07 3.92 3.92 Total: -1.00 -28.86 260.21 -7.65 -36.51 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.67 Total: -1.01 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -0.90 Total: -14.47 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.02 Total: -42.18 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.86 -7.65 -36.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.317 kcal (2) G-P(sol) polarization free energy of solvation -28.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds