Wall clock time and date at job start Thu Apr 9 2020 11:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.28837 * 2 1 4 4 C 1.53824 * 110.24849 * 238.01630 * 2 1 3 5 5 N 1.47080 * 106.31880 * 261.47059 * 4 2 1 6 6 C 1.36943 * 126.31946 * 150.41686 * 5 4 2 7 7 H 1.07998 * 119.99561 * 179.97438 * 6 5 4 8 8 C 1.38811 * 119.99968 * 359.97438 * 6 5 4 9 9 N 1.31614 * 119.99986 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99789 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47370 * 59.99903 * 10 8 6 12 12 H 1.48502 * 109.46879 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.46789 * 299.99629 * 10 8 6 14 14 C 1.47059 * 107.36250 * 330.44394 * 5 4 2 15 15 H 1.08996 * 110.83305 * 265.89251 * 14 5 4 16 16 C 1.53485 * 109.43228 * 142.51406 * 14 5 4 17 17 C 1.53772 * 107.22030 * 241.03949 * 16 14 5 18 18 C 1.53918 * 105.80574 * 19.66590 * 17 16 14 19 19 C 1.53720 * 105.46295 * 331.70403 * 18 17 16 20 20 H 1.09002 * 111.41842 * 263.81244 * 19 18 17 21 21 H 1.08990 * 109.47568 * 291.06910 * 1 2 3 22 22 H 1.09013 * 109.46893 * 51.07047 * 1 2 3 23 23 H 1.08998 * 109.47240 * 171.06036 * 1 2 3 24 24 H 1.09001 * 109.47014 * 181.98345 * 3 2 1 25 25 H 1.08998 * 109.47414 * 301.98119 * 3 2 1 26 26 H 1.09001 * 109.47069 * 61.98428 * 3 2 1 27 27 H 1.09001 * 110.08893 * 20.68965 * 4 2 1 28 28 H 1.09004 * 110.08558 * 142.26026 * 4 2 1 29 29 H 0.97003 * 119.99906 * 180.02562 * 9 8 6 30 30 H 1.09004 * 109.89640 * 0.36020 * 16 14 5 31 31 H 1.09002 * 109.89718 * 121.40395 * 16 14 5 32 32 H 1.08994 * 110.14365 * 260.61073 * 17 16 14 33 33 H 1.09006 * 110.25394 * 138.77420 * 17 16 14 34 34 H 1.08998 * 110.26371 * 212.68085 * 18 17 16 35 35 H 1.08997 * 110.26191 * 90.72781 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 6 2.0624 -0.7644 -1.2241 5 7 2.4018 -2.1154 -0.7521 6 6 2.3648 -3.2666 -1.4930 7 1 2.6371 -4.2087 -1.0407 8 6 1.9773 -3.2224 -2.8252 9 7 1.6450 -2.0742 -3.3761 10 14 1.9275 -4.7925 -3.8359 11 1 0.9757 -5.7497 -3.2170 12 1 1.4840 -4.4778 -5.2178 13 1 3.2828 -5.3983 -3.8764 14 6 2.7877 -2.0021 0.6624 15 1 3.8680 -1.8975 0.7623 16 6 2.2669 -3.2229 1.4332 17 6 1.3001 -2.7030 2.5100 18 6 0.8809 -1.2945 2.0522 19 6 2.0622 -0.7643 1.2238 20 1 2.7228 -0.1407 1.8263 21 1 -0.3634 0.3694 0.9589 22 1 -0.3633 0.6458 -0.7995 23 1 -0.3633 -1.0152 -0.1597 24 1 3.1499 1.4197 -0.0356 25 1 1.6760 1.9646 -0.8717 26 1 1.7337 1.9432 0.9073 27 1 1.2935 -0.8193 -1.9947 28 1 2.9515 -0.2705 -1.6162 29 1 1.3738 -2.0434 -4.3070 30 1 1.7387 -3.8925 0.7544 31 1 3.0992 -3.7495 1.9003 32 1 1.8055 -2.6500 3.4742 33 1 0.4267 -3.3517 2.5779 34 1 0.7074 -0.6529 2.9161 35 1 -0.0172 -1.3493 1.4370 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306610119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:53 Heat of formation + Delta-G solvation = 0.629605 kcal Electronic energy + Delta-G solvation = -15006.742361 eV Core-core repulsion = 12811.194126 eV Total energy + Delta-G solvation = -2195.548234 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.00347 -35.78679 -35.51715 -32.79101 -29.02183 -28.76491 -27.59617 -27.45952 -24.32987 -21.18026 -20.98030 -19.29210 -18.56522 -16.89260 -16.68696 -16.08322 -15.07578 -15.04545 -14.51315 -14.33660 -13.85881 -13.64881 -13.18477 -12.97075 -12.64103 -12.55018 -12.30659 -12.18468 -12.08298 -11.95781 -11.77482 -11.37435 -11.23188 -11.09873 -10.95865 -10.74424 -10.68938 -8.81641 -7.68986 -5.14900 1.45185 1.48124 1.54292 2.51456 3.35129 3.66828 3.78660 3.91968 4.02978 4.32345 4.35604 4.44114 4.67675 4.74097 4.76814 4.88141 4.90397 4.99332 5.04768 5.08834 5.15240 5.21673 5.28737 5.30147 5.34952 5.43273 5.55055 5.56789 5.61220 5.69300 5.85040 5.98753 6.45522 7.17906 7.87479 8.54224 9.29546 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.012935 C = 0.010540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.805486 B = 2164.114832 C = 2655.931400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.124 4.124 4 C 0.150 3.850 5 N -0.611 5.611 6 C -0.222 4.222 7 H 0.079 0.921 8 C -0.071 4.071 9 N -0.949 5.949 10 Si 0.975 3.025 11 H -0.277 1.277 12 H -0.295 1.295 13 H -0.282 1.282 14 C 0.145 3.855 15 H 0.014 0.986 16 C -0.128 4.128 17 C -0.110 4.110 18 C -0.123 4.123 19 C -0.086 4.086 20 H 0.089 0.911 21 H 0.078 0.922 22 H 0.042 0.958 23 H 0.033 0.967 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.087 0.913 28 H -0.031 1.031 29 H 0.244 0.756 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 3.592 10.993 11.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.181 4.181 4 C 0.025 3.975 5 N -0.334 5.334 6 C -0.351 4.351 7 H 0.097 0.903 8 C -0.263 4.263 9 N -0.600 5.600 10 Si 0.804 3.196 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.208 1.208 14 C 0.039 3.961 15 H 0.031 0.969 16 C -0.166 4.166 17 C -0.147 4.147 18 C -0.160 4.160 19 C -0.105 4.105 20 H 0.107 0.893 21 H 0.096 0.904 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.095 0.905 27 H 0.105 0.895 28 H -0.013 1.013 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.928 3.494 10.782 11.497 hybrid contribution 0.383 -0.882 -1.217 1.551 sum -1.545 2.613 9.565 10.035 Atomic orbital electron populations 1.21782 0.94182 0.99915 1.01279 1.21470 0.96098 0.95526 0.95465 1.21746 0.99938 0.94450 1.01969 1.21795 0.96987 0.83210 0.95539 1.44791 1.77626 1.03858 1.07175 1.19315 1.36589 0.86904 0.92274 0.90271 1.25548 1.02888 0.99891 0.97990 1.69946 1.53480 1.24403 1.12156 0.85192 0.77817 0.79081 0.77527 1.20352 1.22072 1.20791 1.21551 0.95032 0.94940 0.84575 0.96878 1.22271 0.98974 0.97917 0.97487 1.22012 0.98331 0.96557 0.97841 1.22481 0.98225 0.95990 0.99295 1.22372 0.97216 0.95446 0.95502 0.89321 0.90356 0.93864 0.94766 0.93801 0.93258 0.90527 0.89489 1.01280 0.94591 0.93294 0.92316 0.90368 0.91962 0.89731 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.00 6.90 71.98 0.50 -3.51 16 2 C -0.08 -3.20 1.04 -51.64 -0.05 -3.26 16 3 C -0.12 -3.90 8.22 71.98 0.59 -3.31 16 4 C 0.15 7.68 5.27 86.55 0.46 8.14 16 5 N -0.61 -32.26 3.28 -670.76 -2.20 -34.45 16 6 C -0.22 -12.65 9.13 84.03 0.77 -11.88 16 7 H 0.08 4.35 7.03 -2.91 -0.02 4.33 16 8 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 9 N -0.95 -57.87 10.06 21.65 0.22 -57.65 16 10 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 14 C 0.15 6.22 4.05 45.41 0.18 6.40 16 15 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 16 C -0.13 -4.81 6.22 31.02 0.19 -4.62 16 17 C -0.11 -3.22 6.81 31.16 0.21 -3.01 16 18 C -0.12 -3.63 5.37 31.15 0.17 -3.47 16 19 C -0.09 -3.00 3.42 -9.92 -0.03 -3.03 16 20 H 0.09 2.70 7.76 -2.39 -0.02 2.68 16 21 H 0.08 2.17 6.96 -2.39 -0.02 2.15 16 22 H 0.04 1.48 8.14 -2.38 -0.02 1.47 16 23 H 0.03 1.37 7.02 -2.39 -0.02 1.36 16 24 H 0.04 1.41 8.10 -2.39 -0.02 1.39 16 25 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 27 H 0.09 5.06 5.17 -2.39 -0.01 5.04 16 28 H -0.03 -1.72 7.77 -2.39 -0.02 -1.73 16 29 H 0.24 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.05 2.13 6.31 -2.39 -0.02 2.12 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 2.36 4.53 -2.39 -0.01 2.35 16 Total: -1.00 -64.63 260.21 4.54 -60.09 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 1.05 Total: 8.39 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: 3.45 Total: -25.21 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -1.98 Total: -92.10 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -64.63 4.54 -60.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.718 kcal (2) G-P(sol) polarization free energy of solvation -64.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds