Wall clock time and date at job start Thu Apr 9 2020 11:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00071 * 2 1 4 4 C 1.50697 * 119.99893 * 180.02562 * 2 1 3 5 5 N 1.46900 * 109.47358 * 94.99908 * 4 2 1 6 6 C 1.46844 * 110.99734 * 293.94784 * 5 4 2 7 7 C 1.53044 * 109.52351 * 174.16205 * 6 5 4 8 8 C 1.53114 * 109.27620 * 59.18200 * 7 6 5 9 9 C 1.53122 * 109.15993 * 302.34480 * 8 7 6 10 10 H 1.09000 * 109.50351 * 297.67604 * 9 8 7 11 11 C 1.50708 * 109.50127 * 177.59814 * 9 8 7 12 12 H 1.07991 * 119.99789 * 240.00607 * 11 9 8 13 13 C 1.37877 * 120.00008 * 59.99918 * 11 9 8 14 14 N 1.31514 * 120.00089 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 119.99938 * 0.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.46847 * 110.99870 * 169.74413 * 5 4 2 20 20 H 1.07998 * 120.00399 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.00016 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47098 * 180.02562 * 3 2 1 23 23 H 1.08996 * 109.47369 * 300.00569 * 3 2 1 24 24 H 1.09002 * 109.47383 * 60.00118 * 3 2 1 25 25 H 1.09006 * 109.47385 * 334.99606 * 4 2 1 26 26 H 1.09003 * 109.47091 * 214.99553 * 4 2 1 27 27 H 1.09006 * 109.45970 * 54.15049 * 6 5 4 28 28 H 1.08998 * 109.46780 * 294.17822 * 6 5 4 29 29 H 1.09005 * 109.50098 * 299.23981 * 7 6 5 30 30 H 1.09004 * 109.50301 * 179.12905 * 7 6 5 31 31 H 1.09008 * 109.52033 * 182.44299 * 8 7 6 32 32 H 1.08993 * 109.57636 * 62.28390 * 8 7 6 33 33 H 0.96997 * 119.99848 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.46702 * 65.82562 * 19 5 4 35 35 H 1.09003 * 109.46567 * 305.85129 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4128 -1.6682 -1.3804 6 6 1.2087 -1.9598 -2.1687 7 6 1.5980 -2.1909 -3.6307 8 6 2.5806 -3.3622 -3.7130 9 6 3.8038 -3.0541 -2.8450 10 1 4.3101 -2.1692 -3.2306 11 6 4.7494 -4.2273 -2.8735 12 1 5.0046 -4.7375 -1.9566 13 6 5.2886 -4.6492 -4.0703 14 7 6.1134 -5.6733 -4.0953 15 14 4.8476 -3.7663 -5.6563 16 1 3.6474 -4.4004 -6.2586 17 1 5.9852 -3.8575 -6.6065 18 1 4.5595 -2.3390 -5.3647 19 6 3.3505 -2.7980 -1.4059 20 1 -0.5401 0.9353 0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 3.1351 1.1059 -0.0005 23 1 1.8001 1.8767 -0.8899 24 1 1.8002 1.8767 0.8900 25 1 1.4385 -2.0857 0.4335 26 1 2.9742 -1.1991 0.5889 27 1 0.5201 -1.1172 -2.1051 28 1 0.7252 -2.8542 -1.7760 29 1 2.0692 -1.2919 -4.0282 30 1 0.7059 -2.4225 -4.2126 31 1 2.8942 -3.5026 -4.7476 32 1 2.0975 -4.2702 -3.3524 33 1 6.4929 -5.9698 -4.9372 34 1 2.8570 -3.6886 -1.0168 35 1 4.2177 -2.5644 -0.7882 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306610897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:57 Heat of formation + Delta-G solvation = 11.846312 kcal Electronic energy + Delta-G solvation = -14259.930770 eV Core-core repulsion = 12064.868928 eV Total energy + Delta-G solvation = -2195.061842 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.69586 -35.74702 -33.02598 -31.69129 -30.24519 -27.22817 -26.17780 -24.85463 -22.34326 -21.15106 -18.87454 -18.22996 -16.69387 -15.58556 -14.92141 -14.62063 -14.12622 -13.80800 -13.58388 -12.99984 -12.98099 -12.83137 -12.24370 -12.10720 -11.63120 -11.23475 -11.11291 -11.01109 -10.91819 -10.44832 -10.04016 -9.93262 -9.67107 -9.08893 -8.97112 -8.89976 -8.48927 -7.77217 -6.04753 -4.03688 2.26204 3.30600 3.41674 3.45591 4.44928 4.52712 4.96334 5.01234 5.27180 5.51144 5.52636 5.60361 5.69142 5.77197 5.81961 5.91736 6.00475 6.04801 6.06954 6.19160 6.31683 6.36795 6.51848 6.63860 6.65846 6.82415 6.87183 6.95726 7.23017 7.45412 7.64476 7.68486 7.90048 8.54713 8.98439 9.58289 11.08540 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.050624 B = 0.008415 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.961276 B = 3326.480521 C = 3507.030962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 C -0.113 4.113 4 C 0.084 3.916 5 N -0.536 5.536 6 C 0.060 3.940 7 C -0.119 4.119 8 C -0.123 4.123 9 C 0.021 3.979 10 H 0.035 0.965 11 C -0.514 4.514 12 H 0.072 0.928 13 C 0.070 3.930 14 N -0.903 5.903 15 Si 0.888 3.112 16 H -0.280 1.280 17 H -0.299 1.299 18 H -0.263 1.263 19 C 0.077 3.923 20 H 0.095 0.905 21 H 0.093 0.907 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.025 0.975 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.263 0.737 34 H 0.026 0.974 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 10.545 5.517 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.102 4.102 3 C -0.170 4.170 4 C -0.043 4.043 5 N -0.261 5.261 6 C -0.068 4.068 7 C -0.157 4.157 8 C -0.160 4.160 9 C 0.001 3.999 10 H 0.053 0.947 11 C -0.552 4.552 12 H 0.090 0.910 13 C -0.131 4.131 14 N -0.541 5.541 15 Si 0.719 3.281 16 H -0.208 1.208 17 H -0.226 1.226 18 H -0.188 1.188 19 C -0.050 4.050 20 H 0.113 0.887 21 H 0.111 0.889 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.873 10.818 5.198 15.541 hybrid contribution -0.653 -0.455 -0.610 1.003 sum -10.526 10.363 4.588 15.467 Atomic orbital electron populations 1.23609 0.95375 1.01425 1.04111 1.21744 0.95014 0.95976 0.97458 1.20770 1.00691 0.94306 1.01218 1.21175 0.98911 0.93140 0.91086 1.61968 1.14075 1.40197 1.09826 1.22053 0.91759 0.98710 0.94290 1.21648 0.98969 1.00051 0.95003 1.22026 0.97352 0.96525 1.00106 1.19159 0.92738 0.97512 0.90460 0.94662 1.21013 1.25475 1.13377 0.95361 0.90973 1.24982 0.94538 0.94610 0.98989 1.69901 1.31495 1.26026 1.26711 0.86821 0.76711 0.81239 0.83354 1.20758 1.22633 1.18801 1.22105 0.93846 0.89098 0.99921 0.88711 0.88867 0.91553 0.91718 0.92200 0.94856 0.90374 0.91385 0.95690 0.91895 0.92901 0.93598 0.92609 0.92712 0.95611 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.41 12.38 29.01 0.36 -2.05 16 2 C -0.10 -1.31 4.97 -101.07 -0.50 -1.81 16 3 C -0.11 -1.29 10.05 36.00 0.36 -0.93 16 4 C 0.08 1.25 5.06 -4.98 -0.03 1.23 16 5 N -0.54 -9.55 4.65 -236.11 -1.10 -10.65 16 6 C 0.06 1.01 5.20 -3.83 -0.02 0.99 16 7 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 8 C -0.12 -2.71 4.73 -26.61 -0.13 -2.84 16 9 C 0.02 0.49 1.85 -91.68 -0.17 0.32 16 10 H 0.04 0.89 7.21 -51.93 -0.37 0.52 16 11 C -0.51 -14.55 9.15 -34.44 -0.31 -14.87 16 12 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 13 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 14 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 15 Si 0.89 22.41 24.35 -169.99 -4.14 18.27 16 16 H -0.28 -6.90 6.89 56.52 0.39 -6.51 16 17 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 18 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 19 C 0.08 1.59 4.68 -3.83 -0.02 1.57 16 20 H 0.09 0.96 8.05 -52.49 -0.42 0.54 16 21 H 0.09 1.08 7.99 -52.48 -0.42 0.66 16 22 H 0.07 0.79 8.00 -51.93 -0.42 0.38 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.03 0.49 7.97 -51.93 -0.41 0.07 16 26 H 0.08 1.12 7.98 -51.93 -0.41 0.70 16 27 H 0.07 1.03 6.07 -51.93 -0.32 0.72 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 1.07 3.35 -51.92 -0.17 0.90 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 1.37 8.01 -51.93 -0.42 0.96 16 LS Contribution 271.02 15.07 4.08 4.08 Total: -1.00 -29.81 271.02 -7.02 -36.83 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -5.92 Total: -2.63 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -0.71 Total: -18.77 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.32 Total: -37.77 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.14 Total: 18.27 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.81 -7.02 -36.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.671 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds