Wall clock time and date at job start Thu Apr 9 2020 11:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00071 * 2 1 4 4 C 1.50697 * 119.99893 * 180.02562 * 2 1 3 5 5 N 1.46900 * 109.47358 * 94.99908 * 4 2 1 6 6 C 1.46844 * 110.99734 * 293.94784 * 5 4 2 7 7 C 1.53044 * 109.52351 * 174.16205 * 6 5 4 8 8 C 1.53114 * 109.27620 * 59.18200 * 7 6 5 9 9 C 1.53122 * 109.15993 * 302.34480 * 8 7 6 10 10 H 1.09000 * 109.50351 * 297.67604 * 9 8 7 11 11 C 1.50708 * 109.50127 * 177.59814 * 9 8 7 12 12 H 1.07991 * 119.99789 * 240.00607 * 11 9 8 13 13 C 1.37877 * 120.00008 * 59.99918 * 11 9 8 14 14 N 1.31514 * 120.00089 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 119.99938 * 0.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 269.99556 * 15 13 11 17 17 H 1.48503 * 109.47261 * 149.99737 * 15 13 11 18 18 H 1.48500 * 109.47454 * 29.99730 * 15 13 11 19 19 C 1.46847 * 110.99870 * 169.74413 * 5 4 2 20 20 H 1.07998 * 120.00399 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.00016 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47098 * 180.02562 * 3 2 1 23 23 H 1.08996 * 109.47369 * 300.00569 * 3 2 1 24 24 H 1.09002 * 109.47383 * 60.00118 * 3 2 1 25 25 H 1.09006 * 109.47385 * 334.99606 * 4 2 1 26 26 H 1.09003 * 109.47091 * 214.99553 * 4 2 1 27 27 H 1.09006 * 109.45970 * 54.15049 * 6 5 4 28 28 H 1.08998 * 109.46780 * 294.17822 * 6 5 4 29 29 H 1.09005 * 109.50098 * 299.23981 * 7 6 5 30 30 H 1.09004 * 109.50301 * 179.12905 * 7 6 5 31 31 H 1.09008 * 109.52033 * 182.44299 * 8 7 6 32 32 H 1.08993 * 109.57636 * 62.28390 * 8 7 6 33 33 H 0.96997 * 119.99848 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.46702 * 65.82562 * 19 5 4 35 35 H 1.09003 * 109.46567 * 305.85129 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4128 -1.6682 -1.3804 6 6 1.2087 -1.9598 -2.1687 7 6 1.5980 -2.1909 -3.6307 8 6 2.5806 -3.3622 -3.7130 9 6 3.8038 -3.0541 -2.8450 10 1 4.3101 -2.1692 -3.2306 11 6 4.7494 -4.2273 -2.8735 12 1 5.0046 -4.7375 -1.9566 13 6 5.2886 -4.6492 -4.0703 14 7 6.1134 -5.6733 -4.0953 15 14 4.8476 -3.7663 -5.6563 16 1 3.6474 -4.4004 -6.2586 17 1 5.9852 -3.8575 -6.6065 18 1 4.5595 -2.3390 -5.3647 19 6 3.3505 -2.7980 -1.4059 20 1 -0.5401 0.9353 0.0004 21 1 -0.5400 -0.9353 -0.0004 22 1 3.1351 1.1059 -0.0005 23 1 1.8001 1.8767 -0.8899 24 1 1.8002 1.8767 0.8900 25 1 1.4385 -2.0857 0.4335 26 1 2.9742 -1.1991 0.5889 27 1 0.5201 -1.1172 -2.1051 28 1 0.7252 -2.8542 -1.7760 29 1 2.0692 -1.2919 -4.0282 30 1 0.7059 -2.4225 -4.2126 31 1 2.8942 -3.5026 -4.7476 32 1 2.0975 -4.2702 -3.3524 33 1 6.4929 -5.9698 -4.9372 34 1 2.8570 -3.6886 -1.0168 35 1 4.2177 -2.5644 -0.7882 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306610897.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 11:49:56 Heat of formation + Delta-G solvation = -7.621179 kcal Electronic energy + Delta-G solvation = -14260.774943 eV Core-core repulsion = 12064.868928 eV Total energy + Delta-G solvation = -2195.906015 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.15729 -37.03991 -34.87196 -33.30087 -32.01730 -28.15598 -27.47771 -26.80383 -23.84667 -22.86206 -20.50817 -19.32009 -18.79818 -17.21114 -16.16812 -16.13625 -15.57641 -15.32483 -15.07550 -14.81514 -14.29197 -14.03852 -13.92866 -13.57213 -12.93796 -12.73735 -12.59352 -12.51673 -12.26435 -11.93777 -11.85178 -11.70535 -11.44814 -11.01922 -10.79173 -10.62373 -9.94459 -9.17659 -8.31214 -6.34820 1.29408 1.31326 1.35949 1.47357 2.32374 3.04567 3.17292 3.90027 3.98535 4.07652 4.13661 4.27733 4.43501 4.55012 4.65319 4.66258 4.77605 4.80559 4.82371 4.92892 4.95771 5.04279 5.12339 5.13737 5.21212 5.23582 5.42893 5.61812 5.70582 5.74948 5.97607 6.17085 6.26974 6.35357 6.72439 7.30963 8.85684 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.050624 B = 0.008415 C = 0.007982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.961276 B = 3326.480521 C = 3507.030962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.120 4.120 3 C -0.110 4.110 4 C 0.084 3.916 5 N -0.541 5.541 6 C 0.061 3.939 7 C -0.114 4.114 8 C -0.122 4.122 9 C 0.021 3.979 10 H 0.025 0.975 11 C -0.521 4.521 12 H 0.033 0.967 13 C 0.013 3.987 14 N -0.950 5.950 15 Si 0.952 3.048 16 H -0.267 1.267 17 H -0.298 1.298 18 H -0.248 1.248 19 C 0.088 3.912 20 H 0.115 0.885 21 H 0.094 0.906 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.026 0.974 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.048 0.952 33 H 0.266 0.734 34 H 0.015 0.985 35 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.577 12.715 5.076 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.121 4.121 3 C -0.167 4.167 4 C -0.043 4.043 5 N -0.266 5.266 6 C -0.066 4.066 7 C -0.151 4.151 8 C -0.160 4.160 9 C 0.002 3.998 10 H 0.043 0.957 11 C -0.559 4.559 12 H 0.051 0.949 13 C -0.184 4.184 14 N -0.591 5.591 15 Si 0.779 3.221 16 H -0.193 1.193 17 H -0.226 1.226 18 H -0.172 1.172 19 C -0.040 4.040 20 H 0.133 0.867 21 H 0.113 0.887 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.230 13.005 4.777 18.480 hybrid contribution 0.076 -1.172 -0.352 1.226 sum -12.154 11.833 4.425 17.530 Atomic orbital electron populations 1.23799 0.94868 1.02501 1.01682 1.21697 0.95475 0.95310 0.99581 1.20756 0.99764 0.93871 1.02278 1.21228 0.99363 0.94505 0.89223 1.61927 1.14408 1.38220 1.11999 1.22102 0.91562 0.99806 0.93177 1.21628 0.98977 0.98004 0.96527 1.21928 0.97301 0.98143 0.98637 1.19063 0.92789 0.94860 0.93106 0.95694 1.21341 1.26262 1.14364 0.93942 0.94903 1.25845 0.94430 0.95349 1.02759 1.70046 1.33195 1.28017 1.27806 0.85788 0.76769 0.80767 0.78788 1.19294 1.22619 1.17217 1.21805 0.94542 0.90064 0.97572 0.86682 0.88718 0.92757 0.91392 0.90376 0.94641 0.90531 0.88866 0.95600 0.91874 0.89953 0.94638 0.93367 0.92535 0.96634 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.69 12.38 67.78 0.84 -2.85 16 2 C -0.12 -2.74 4.97 -16.49 -0.08 -2.82 16 3 C -0.11 -2.20 10.05 71.23 0.72 -1.49 16 4 C 0.08 2.33 5.06 85.56 0.43 2.77 16 5 N -0.54 -18.34 4.65 -900.90 -4.19 -22.52 16 6 C 0.06 1.87 5.20 86.33 0.45 2.32 16 7 C -0.11 -3.79 6.09 30.65 0.19 -3.60 16 8 C -0.12 -5.24 4.73 30.67 0.15 -5.09 16 9 C 0.02 1.01 1.85 -11.48 -0.02 0.99 16 10 H 0.02 1.25 7.21 -2.39 -0.02 1.23 16 11 C -0.52 -30.42 9.15 25.60 0.23 -30.18 16 12 H 0.03 2.11 7.99 -2.92 -0.02 2.08 16 13 C 0.01 0.78 5.45 84.65 0.46 1.24 16 14 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 15 Si 0.95 46.25 24.35 68.60 1.67 47.92 16 16 H -0.27 -12.31 6.89 99.48 0.69 -11.62 16 17 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 18 H -0.25 -11.36 6.53 99.48 0.65 -10.71 16 19 C 0.09 3.63 4.68 86.33 0.40 4.04 16 20 H 0.12 1.79 8.05 -2.91 -0.02 1.77 16 21 H 0.09 1.82 7.99 -2.91 -0.02 1.80 16 22 H 0.05 1.20 8.00 -2.39 -0.02 1.18 16 23 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 0.97 7.97 -2.38 -0.02 0.95 16 26 H 0.08 2.12 7.98 -2.39 -0.02 2.10 16 27 H 0.09 2.43 6.07 -2.38 -0.01 2.42 16 28 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.04 1.58 3.35 -2.38 -0.01 1.57 16 32 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 34 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 2.51 8.01 -2.39 -0.02 2.49 16 Total: -1.00 -64.93 271.02 2.50 -62.43 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 0.95 Total: 7.04 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 3.77 Total: -34.69 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -3.89 Total: -82.69 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.67 Total: 47.92 kcal Total: -64.93 2.50 -62.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610897.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.805 kcal (2) G-P(sol) polarization free energy of solvation -64.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds